Wall clock time and date at job start Tue Mar 31 2020 08:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.46958 * 2 1 4 4 C 1.34237 * 116.99922 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99842 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.01674 * 58.61253 * 6 4 3 8 8 C 1.54266 * 110.03758 * 297.16905 * 6 4 3 9 9 C 1.54883 * 104.19707 * 217.10958 * 8 6 4 10 10 C 1.54885 * 102.75299 * 37.93545 * 9 8 6 11 11 H 1.09007 * 110.48337 * 80.73992 * 10 9 8 12 12 N 1.46902 * 110.60351 * 203.32662 * 10 9 8 13 13 C 1.46901 * 110.99801 * 246.32060 * 12 10 9 14 14 C 1.50695 * 110.01876 * 294.85407 * 13 12 10 15 15 H 1.07998 * 120.00166 * 118.33176 * 14 13 12 16 16 C 1.37875 * 120.00025 * 298.32946 * 14 13 12 17 17 N 1.31516 * 120.00050 * 354.36146 * 16 14 13 18 18 Si 1.86800 * 120.00052 * 174.35682 * 16 14 13 19 19 H 1.48499 * 109.47114 * 90.00181 * 18 16 14 20 20 H 1.48499 * 109.47418 * 210.00480 * 18 16 14 21 21 H 1.48496 * 109.47201 * 330.00267 * 18 16 14 22 22 C 1.54269 * 110.02737 * 173.46267 * 13 12 10 23 23 C 1.54973 * 104.15716 * 217.13770 * 22 13 12 24 24 C 1.54879 * 102.77829 * 37.88982 * 23 22 13 25 25 C 1.53878 * 110.03276 * 56.24976 * 13 12 10 26 26 C 1.53876 * 110.03164 * 180.02562 * 6 4 3 27 27 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47257 * 299.99866 * 1 2 3 29 29 H 1.09000 * 109.47348 * 60.00068 * 1 2 3 30 30 H 1.08991 * 109.47331 * 120.00169 * 2 1 3 31 31 H 1.09006 * 109.46954 * 240.00422 * 2 1 3 32 32 H 1.09002 * 110.48309 * 335.78576 * 8 6 4 33 33 H 1.08997 * 110.48781 * 98.42145 * 8 6 4 34 34 H 1.09004 * 110.75247 * 279.62404 * 9 8 6 35 35 H 1.08992 * 110.75920 * 156.25723 * 9 8 6 36 36 H 1.00902 * 111.00072 * 122.36967 * 12 10 9 37 37 H 0.96997 * 119.99870 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.48717 * 335.78292 * 22 13 12 39 39 H 1.09003 * 110.48765 * 98.43183 * 22 13 12 40 40 H 1.09000 * 110.71919 * 279.57217 * 23 22 13 41 41 H 1.09000 * 110.76040 * 156.22477 * 23 22 13 42 42 H 1.09003 * 110.49202 * 203.40584 * 24 23 22 43 43 H 1.08999 * 110.48920 * 80.75863 * 24 23 22 44 44 H 1.09006 * 110.03028 * 238.56843 * 25 13 12 45 45 H 1.09003 * 110.03039 * 359.97438 * 25 13 12 46 46 H 1.08999 * 110.03149 * 238.57159 * 26 6 4 47 47 H 1.09001 * 110.02882 * 359.95251 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5707 3.4863 0.8731 8 6 3.5107 3.6784 -1.2906 9 6 4.7576 4.5208 -1.6574 10 6 5.9286 3.5755 -1.2915 11 1 6.0929 2.8467 -2.0853 12 7 7.1545 4.3446 -1.0396 13 6 8.1724 4.0620 -2.0605 14 6 8.6114 2.6235 -1.9668 15 1 8.4572 1.9564 -2.8020 16 6 9.2100 2.1590 -0.8149 17 7 9.4987 2.9944 0.1590 18 14 9.6110 0.3432 -0.6374 19 1 10.9784 0.0853 -1.1558 20 1 9.5441 -0.0408 0.7955 21 1 8.6291 -0.4584 -1.4110 22 6 9.3842 4.9978 -1.8716 23 6 9.8380 5.3266 -3.3164 24 6 8.4948 5.4523 -4.0772 25 6 7.6072 4.3505 -3.4623 26 6 5.4580 2.8720 -0.0023 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.2844 2.9663 -2.0842 33 1 2.6544 4.3261 -1.1026 34 1 4.7966 5.4327 -1.0615 35 1 4.7671 4.7533 -2.7222 36 1 7.5113 4.1633 -0.1133 37 1 9.9195 2.6676 0.9695 38 1 9.0863 5.9070 -1.3493 39 1 10.1793 4.4874 -1.3280 40 1 10.4394 4.5149 -3.7258 41 1 10.3872 6.2677 -3.3442 42 1 8.6414 5.2737 -5.1424 43 1 8.0529 6.4348 -3.9114 44 1 7.6512 3.4501 -4.0752 45 1 6.5775 4.6998 -3.3851 46 1 5.8544 3.3897 0.8711 47 1 5.7875 1.8330 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257045810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:58 Heat of formation + Delta-G solvation = -123.077489 kcal Electronic energy + Delta-G solvation = -25441.702683 eV Core-core repulsion = 22008.586725 eV Total energy + Delta-G solvation = -3433.115958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79194 -39.90511 -38.34730 -37.43410 -34.71073 -33.46109 -32.53975 -30.02794 -29.35584 -29.06435 -27.22799 -25.53940 -24.55061 -23.05192 -21.62910 -21.11976 -20.47420 -20.01160 -18.93353 -18.21827 -17.65864 -17.54878 -16.80678 -16.43046 -16.07505 -15.65680 -15.08778 -14.95329 -14.60564 -14.42218 -14.21749 -13.97894 -13.80305 -13.32252 -13.23207 -13.00309 -12.96387 -12.71412 -12.51558 -12.48588 -12.40335 -12.23467 -12.11008 -11.80175 -11.76718 -11.57262 -11.55220 -11.40474 -11.32535 -11.19456 -11.11188 -11.01324 -10.92014 -10.32754 -8.78867 -7.98597 -6.20244 1.12631 1.27867 1.33514 1.39965 1.64011 2.37869 3.14222 3.48573 3.66103 3.80951 3.95427 3.96417 4.07104 4.22449 4.28684 4.30588 4.34015 4.44766 4.55079 4.60831 4.68147 4.73260 4.82961 4.90847 4.93525 5.00299 5.02815 5.05397 5.11190 5.13978 5.16217 5.25006 5.25723 5.37632 5.39271 5.44221 5.52237 5.54911 5.60925 5.71098 5.75720 5.84036 6.11817 6.36036 6.70354 6.80459 7.07130 7.24232 7.51868 8.90541 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.005007 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.538865 B = 5591.007022 C = 6757.372971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.352 6.352 4 C 0.467 3.533 5 O -0.546 6.546 6 C -0.076 4.076 7 H 0.136 0.864 8 C -0.097 4.097 9 C -0.103 4.103 10 C 0.096 3.904 11 H 0.031 0.969 12 N -0.670 5.670 13 C 0.225 3.775 14 C -0.536 4.536 15 H 0.029 0.971 16 C 0.043 3.957 17 N -0.894 5.894 18 Si 0.917 3.083 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.288 1.288 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.123 4.123 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.339 0.661 37 H 0.260 0.740 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.011 2.313 -1.201 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 O -0.269 6.269 4 C 0.312 3.688 5 O -0.436 6.436 6 C -0.096 4.096 7 H 0.154 0.846 8 C -0.135 4.135 9 C -0.141 4.141 10 C -0.015 4.015 11 H 0.049 0.951 12 N -0.301 5.301 13 C 0.136 3.864 14 C -0.576 4.576 15 H 0.048 0.952 16 C -0.158 4.158 17 N -0.533 5.533 18 Si 0.746 3.254 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.214 1.214 22 C -0.131 4.131 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.162 4.162 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.971 2.565 -1.328 16.230 hybrid contribution 1.234 -2.907 0.679 3.230 sum -14.737 -0.342 -0.648 14.755 Atomic orbital electron populations 1.21802 0.89660 1.04384 1.04013 1.23309 0.97590 0.79579 1.02082 1.86515 1.23408 1.33309 1.83623 1.24219 0.80646 0.93239 0.70678 1.90661 1.61321 1.44568 1.47021 1.21744 0.95012 0.88809 1.03986 0.84588 1.22289 0.99331 0.98352 0.93552 1.22586 0.92020 0.98207 1.01283 1.22092 0.91706 0.93146 0.94572 0.95123 1.61296 1.05203 1.55914 1.07637 1.19163 0.88259 0.90746 0.88273 1.22023 1.39071 0.97335 0.99201 0.95248 1.25270 0.95277 0.98928 0.96348 1.69877 1.42782 1.33939 1.06725 0.86202 0.78203 0.84107 0.76939 1.20129 1.21170 1.21371 1.22142 0.98984 0.96934 0.95053 1.22408 0.97088 0.99685 0.96345 1.22221 0.95387 0.98521 0.98474 1.22296 0.99309 0.96994 0.96369 1.22498 0.92971 1.01023 0.99704 0.88313 0.90865 0.90951 0.91833 0.92089 0.92150 0.87139 0.89921 0.91251 0.84148 0.93021 0.94516 0.93049 0.93662 0.91490 0.91729 0.91199 0.95046 0.91635 0.91270 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.29 71.98 0.74 -1.17 16 2 C 0.05 1.05 6.19 71.98 0.45 1.50 16 3 O -0.35 -9.25 10.20 -51.48 -0.53 -9.78 16 4 C 0.47 15.10 7.10 71.24 0.51 15.61 16 5 O -0.55 -22.40 14.96 21.98 0.33 -22.07 16 6 C -0.08 -2.20 3.41 -10.82 -0.04 -2.24 16 7 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 8 C -0.10 -2.41 6.34 31.67 0.20 -2.21 16 9 C -0.10 -3.06 6.11 31.88 0.19 -2.86 16 10 C 0.10 3.83 2.15 45.97 0.10 3.92 16 11 H 0.03 1.43 6.49 -2.38 -0.02 1.42 16 12 N -0.67 -29.90 6.02 -443.06 -2.67 -32.57 16 13 C 0.23 10.63 0.48 3.51 0.00 10.63 16 14 C -0.54 -29.05 6.99 25.60 0.18 -28.87 16 15 H 0.03 1.67 7.34 -2.91 -0.02 1.65 16 16 C 0.04 2.32 5.02 84.65 0.42 2.74 16 17 N -0.89 -48.79 10.02 21.45 0.21 -48.58 16 18 Si 0.92 45.51 29.54 68.60 2.03 47.54 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 22 C -0.09 -4.30 5.58 31.70 0.18 -4.13 16 23 C -0.12 -4.56 6.91 31.91 0.22 -4.34 16 24 C -0.11 -3.81 6.83 31.67 0.22 -3.59 16 25 C -0.11 -4.60 5.30 31.32 0.17 -4.43 16 26 C -0.12 -4.76 5.92 31.30 0.19 -4.58 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 32 H 0.06 1.56 7.85 -2.39 -0.02 1.54 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 1.99 6.85 -2.39 -0.02 1.98 16 36 H 0.34 16.77 6.17 -89.69 -0.55 16.22 16 37 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.04 1.68 8.05 -2.39 -0.02 1.66 16 39 H 0.05 2.72 6.07 -2.39 -0.01 2.71 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.03 1.36 7.37 -2.38 -0.02 1.34 16 45 H 0.07 2.50 5.33 -2.39 -0.01 2.49 16 46 H 0.07 2.67 7.56 -2.39 -0.02 2.65 16 47 H 0.04 2.10 6.40 -2.39 -0.02 2.09 16 Total: -1.00 -63.09 358.15 3.49 -59.60 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.39 Total: 29.88 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 3.72 Total: -24.02 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.45 Total: -81.15 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.20 Total: -31.85 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -63.09 3.49 -59.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.479 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds