Wall clock time and date at job start Tue Mar 31 2020 08:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47086 * 2 1 4 4 C 1.34234 * 116.99821 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00027 * 179.97438 * 4 3 2 7 7 H 1.09004 * 110.43109 * 59.30064 * 6 4 3 8 8 C 1.54265 * 110.48780 * 296.76762 * 6 4 3 9 9 C 1.53878 * 106.59469 * 217.57896 * 8 6 4 10 10 C 1.54268 * 106.60164 * 359.97438 * 9 8 6 11 11 H 1.09000 * 110.48699 * 264.80686 * 10 9 8 12 12 N 1.46902 * 110.48712 * 142.28645 * 10 9 8 13 13 C 1.46899 * 110.99416 * 94.89541 * 12 10 9 14 14 C 1.50699 * 110.01975 * 65.67685 * 13 12 10 15 15 H 1.08003 * 120.00106 * 264.63969 * 14 13 12 16 16 C 1.37875 * 119.99818 * 84.64001 * 14 13 12 17 17 N 1.31515 * 120.00085 * 167.05492 * 16 14 13 18 18 Si 1.86801 * 120.00116 * 347.05045 * 16 14 13 19 19 H 1.48497 * 109.47008 * 95.02660 * 18 16 14 20 20 H 1.48500 * 109.47336 * 215.02537 * 18 16 14 21 21 H 1.48504 * 109.46991 * 335.02691 * 18 16 14 22 22 C 1.54270 * 110.03207 * 304.28838 * 13 12 10 23 23 C 1.54969 * 104.15721 * 217.13774 * 22 13 12 24 24 C 1.54891 * 102.77886 * 37.88533 * 23 22 13 25 25 C 1.53872 * 110.03150 * 187.06933 * 13 12 10 26 26 C 1.54890 * 110.59904 * 181.91878 * 6 4 3 27 27 H 1.08998 * 109.47067 * 60.00398 * 1 2 3 28 28 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47296 * 299.99989 * 1 2 3 30 30 H 1.09002 * 109.47370 * 239.99458 * 2 1 3 31 31 H 1.09007 * 109.46978 * 119.99855 * 2 1 3 32 32 H 1.09000 * 110.02930 * 336.85434 * 8 6 4 33 33 H 1.08992 * 110.03754 * 98.24506 * 8 6 4 34 34 H 1.08997 * 110.03275 * 119.28296 * 9 8 6 35 35 H 1.08996 * 110.03004 * 240.71143 * 9 8 6 36 36 H 1.00891 * 111.00071 * 218.84654 * 12 10 9 37 37 H 0.97002 * 120.00340 * 180.02562 * 17 16 14 38 38 H 1.09001 * 110.48551 * 335.78041 * 22 13 12 39 39 H 1.08999 * 110.49006 * 98.42969 * 22 13 12 40 40 H 1.09000 * 110.72334 * 279.57066 * 23 22 13 41 41 H 1.08998 * 110.92396 * 156.29049 * 23 22 13 42 42 H 1.08993 * 110.49017 * 203.40011 * 24 23 22 43 43 H 1.09006 * 110.48390 * 80.76351 * 24 23 22 44 44 H 1.09001 * 110.03476 * 238.56821 * 25 13 12 45 45 H 1.09001 * 110.03426 * 359.95211 * 25 13 12 46 46 H 1.09002 * 110.75445 * 274.99208 * 26 6 4 47 47 H 1.08998 * 110.75511 * 38.36646 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5840 3.4888 0.8778 8 6 3.5264 3.6843 -1.2909 9 6 4.7448 4.5314 -1.6982 10 6 5.8368 4.2701 -0.6402 11 1 5.8107 5.0382 0.1327 12 7 7.1626 4.2218 -1.2710 13 6 7.8256 5.5309 -1.2035 14 6 8.1223 5.8856 0.2308 15 1 7.4344 6.5048 0.7874 16 6 9.2720 5.4196 0.8325 17 7 9.6634 5.9241 1.9822 18 14 10.2737 4.0716 0.0146 19 1 11.3647 4.6824 -0.7865 20 1 10.8587 3.1887 1.0556 21 1 9.3941 3.2720 -0.8754 22 6 6.9273 6.6116 -1.8400 23 6 7.9225 7.5535 -2.5639 24 6 8.9784 6.5695 -3.1260 25 6 9.1292 5.5043 -2.0204 26 6 5.4682 2.8870 -0.0478 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2890 2.9691 -2.0783 33 1 2.6686 4.3295 -1.1017 34 1 5.0985 4.2273 -2.6833 35 1 4.4787 5.5883 -1.7064 36 1 7.7358 3.5043 -0.8532 37 1 10.4725 5.5965 2.4054 38 1 6.2385 6.1623 -2.5553 39 1 6.3789 7.1541 -1.0699 40 1 8.3787 8.2482 -1.8586 41 1 7.4294 8.0939 -3.3719 42 1 9.9257 7.0816 -3.2943 43 1 8.6212 6.1132 -4.0493 44 1 9.9765 5.7487 -1.3797 45 1 9.2705 4.5198 -2.4663 46 1 5.8821 2.7734 0.9542 47 1 5.8085 2.0835 -0.7009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257045811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:01 Heat of formation + Delta-G solvation = -94.859019 kcal Electronic energy + Delta-G solvation = -25214.245875 eV Core-core repulsion = 21782.353562 eV Total energy + Delta-G solvation = -3431.892313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59454 -38.67119 -37.15513 -36.24992 -32.91834 -32.17573 -31.71361 -29.01365 -28.29156 -27.74344 -25.70930 -23.69463 -23.64955 -22.07589 -20.36574 -19.79300 -19.41466 -18.73719 -17.55575 -16.74844 -16.48533 -16.04531 -15.48921 -14.94725 -14.77848 -14.42501 -14.05485 -13.88723 -13.32277 -13.12646 -13.04748 -12.94024 -12.39585 -12.21592 -12.12495 -11.95252 -11.78534 -11.51230 -11.19061 -10.98789 -10.79289 -10.66568 -10.62723 -10.56243 -10.42638 -10.40381 -10.19017 -10.07968 -9.81288 -9.68199 -9.59292 -9.38007 -8.99563 -8.63072 -7.17341 -6.16972 -4.15533 2.27882 2.65624 3.23700 3.33536 3.38300 4.32184 4.57111 4.71010 4.75146 4.81468 4.86069 5.05807 5.09349 5.22206 5.44572 5.53716 5.54076 5.56695 5.64519 5.68755 5.73392 5.76387 5.79838 5.81098 5.99776 6.19309 6.20640 6.34284 6.41450 6.42324 6.45277 6.51197 6.51979 6.57319 6.63342 6.73118 6.75799 6.90979 6.94535 7.09334 7.17518 7.22660 7.68987 7.81554 8.20720 8.51952 8.59951 8.89433 9.48501 10.95088 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004194 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.311597 B = 6675.188516 C = 7386.252273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.470 3.530 5 O -0.507 6.507 6 C -0.085 4.085 7 H 0.111 0.889 8 C -0.107 4.107 9 C -0.115 4.115 10 C 0.094 3.906 11 H 0.071 0.929 12 N -0.686 5.686 13 C 0.204 3.796 14 C -0.536 4.536 15 H 0.071 0.929 16 C 0.075 3.925 17 N -0.889 5.889 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.303 1.303 21 H -0.250 1.250 22 C -0.100 4.100 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.133 4.133 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.333 0.667 37 H 0.263 0.737 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -6.293 -6.502 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.313 3.687 5 O -0.394 6.394 6 C -0.105 4.105 7 H 0.129 0.871 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.017 4.017 11 H 0.088 0.912 12 N -0.319 5.319 13 C 0.115 3.885 14 C -0.575 4.575 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.526 5.526 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.231 1.231 21 H -0.175 1.175 22 C -0.138 4.138 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.171 4.171 26 C -0.150 4.150 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.179 -6.519 -6.996 17.102 hybrid contribution 0.994 -0.908 0.816 1.574 sum -13.185 -7.427 -6.180 16.346 Atomic orbital electron populations 1.21794 0.92761 1.02785 1.03513 1.22989 0.95267 0.80756 1.02477 1.86536 1.25037 1.31885 1.84194 1.23925 0.80135 0.92972 0.71702 1.90653 1.60392 1.43214 1.45150 1.21939 0.97553 0.88999 1.01968 0.87094 1.22082 0.99313 0.98457 0.94621 1.22369 0.93621 0.98796 1.00517 1.22083 0.90325 0.94908 0.94376 0.91153 1.61466 1.03445 1.08719 1.58295 1.19484 0.89441 0.85852 0.93711 1.21498 1.07142 1.33148 0.95729 0.91084 1.25101 0.96839 0.96030 0.94880 1.69970 1.23649 1.40912 1.18074 0.87234 0.80810 0.82409 0.78364 1.21095 1.23090 1.17503 1.22414 0.97056 0.96193 0.98117 1.22373 0.97016 0.97546 0.98572 1.22198 0.98179 0.96926 0.97739 1.22617 0.99604 0.97817 0.97067 1.22707 0.90516 0.99470 1.02275 0.91486 0.90428 0.91490 0.91394 0.91395 0.91966 0.91049 0.90825 0.91832 0.84611 0.92692 0.92370 0.92748 0.91639 0.93342 0.93157 0.92686 0.91410 0.92769 0.90993 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.57 10.22 -39.27 -0.40 -4.98 16 4 C 0.47 6.90 7.12 36.01 0.26 7.16 16 5 O -0.51 -8.84 15.50 -18.75 -0.29 -9.13 16 6 C -0.08 -1.19 3.36 -90.11 -0.30 -1.49 16 7 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 8 C -0.11 -1.36 6.36 -25.61 -0.16 -1.53 16 9 C -0.11 -1.72 4.78 -25.61 -0.12 -1.84 16 10 C 0.09 1.69 2.55 -66.04 -0.17 1.52 16 11 H 0.07 1.44 6.75 -51.93 -0.35 1.09 16 12 N -0.69 -14.05 5.79 -91.35 -0.53 -14.58 16 13 C 0.20 4.47 0.48 -131.64 -0.06 4.40 16 14 C -0.54 -14.05 7.52 -34.44 -0.26 -14.31 16 15 H 0.07 2.06 7.75 -52.48 -0.41 1.65 16 16 C 0.07 2.06 5.14 -17.82 -0.09 1.97 16 17 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 18 Si 0.88 21.23 23.04 -169.99 -3.92 17.32 16 19 H -0.28 -6.82 6.72 56.52 0.38 -6.44 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.25 -5.61 4.49 56.52 0.25 -5.35 16 22 C -0.10 -1.94 4.56 -25.03 -0.11 -2.05 16 23 C -0.12 -2.12 6.91 -24.69 -0.17 -2.29 16 24 C -0.11 -2.06 6.83 -25.07 -0.17 -2.23 16 25 C -0.13 -2.88 3.94 -25.61 -0.10 -2.98 16 26 C -0.11 -1.88 5.25 -24.72 -0.13 -2.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.06 0.78 7.83 -51.93 -0.41 0.37 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.15 7.97 -51.93 -0.41 0.73 16 35 H 0.06 0.92 7.26 -51.93 -0.38 0.54 16 36 H 0.33 7.27 5.13 -39.30 -0.20 7.07 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.06 1.04 5.90 -51.93 -0.31 0.73 16 39 H 0.05 1.09 7.68 -51.93 -0.40 0.69 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.62 4.11 -51.93 -0.21 1.40 16 45 H 0.05 1.14 6.69 -51.93 -0.35 0.80 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.08 1.45 7.50 -51.93 -0.39 1.06 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -29.75 348.64 -8.29 -38.04 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.19 Total: 9.17 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.99 Total: -15.53 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.24 Total: -40.14 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.69 Total: -14.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -3.92 Total: 17.32 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.75 -8.29 -38.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.822 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds