Wall clock time and date at job start Tue Mar 31 2020 08:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47086 * 2 1 4 4 C 1.34234 * 116.99821 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00027 * 179.97438 * 4 3 2 7 7 H 1.09004 * 110.43109 * 59.30064 * 6 4 3 8 8 C 1.54265 * 110.48780 * 296.76762 * 6 4 3 9 9 C 1.53878 * 106.59469 * 217.57896 * 8 6 4 10 10 C 1.54268 * 106.60164 * 359.97438 * 9 8 6 11 11 H 1.09000 * 110.48699 * 264.80686 * 10 9 8 12 12 N 1.46902 * 110.48712 * 142.28645 * 10 9 8 13 13 C 1.46899 * 110.99416 * 94.89541 * 12 10 9 14 14 C 1.50699 * 110.01975 * 65.67685 * 13 12 10 15 15 H 1.08003 * 120.00106 * 264.63969 * 14 13 12 16 16 C 1.37875 * 119.99818 * 84.64001 * 14 13 12 17 17 N 1.31515 * 120.00085 * 167.05492 * 16 14 13 18 18 Si 1.86801 * 120.00116 * 347.05045 * 16 14 13 19 19 H 1.48497 * 109.47008 * 95.02660 * 18 16 14 20 20 H 1.48500 * 109.47336 * 215.02537 * 18 16 14 21 21 H 1.48504 * 109.46991 * 335.02691 * 18 16 14 22 22 C 1.54270 * 110.03207 * 304.28838 * 13 12 10 23 23 C 1.54969 * 104.15721 * 217.13774 * 22 13 12 24 24 C 1.54891 * 102.77886 * 37.88533 * 23 22 13 25 25 C 1.53872 * 110.03150 * 187.06933 * 13 12 10 26 26 C 1.54890 * 110.59904 * 181.91878 * 6 4 3 27 27 H 1.08998 * 109.47067 * 60.00398 * 1 2 3 28 28 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47296 * 299.99989 * 1 2 3 30 30 H 1.09002 * 109.47370 * 239.99458 * 2 1 3 31 31 H 1.09007 * 109.46978 * 119.99855 * 2 1 3 32 32 H 1.09000 * 110.02930 * 336.85434 * 8 6 4 33 33 H 1.08992 * 110.03754 * 98.24506 * 8 6 4 34 34 H 1.08997 * 110.03275 * 119.28296 * 9 8 6 35 35 H 1.08996 * 110.03004 * 240.71143 * 9 8 6 36 36 H 1.00891 * 111.00071 * 218.84654 * 12 10 9 37 37 H 0.97002 * 120.00340 * 180.02562 * 17 16 14 38 38 H 1.09001 * 110.48551 * 335.78041 * 22 13 12 39 39 H 1.08999 * 110.49006 * 98.42969 * 22 13 12 40 40 H 1.09000 * 110.72334 * 279.57066 * 23 22 13 41 41 H 1.08998 * 110.92396 * 156.29049 * 23 22 13 42 42 H 1.08993 * 110.49017 * 203.40011 * 24 23 22 43 43 H 1.09006 * 110.48390 * 80.76351 * 24 23 22 44 44 H 1.09001 * 110.03476 * 238.56821 * 25 13 12 45 45 H 1.09001 * 110.03426 * 359.95211 * 25 13 12 46 46 H 1.09002 * 110.75445 * 274.99208 * 26 6 4 47 47 H 1.08998 * 110.75511 * 38.36646 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5840 3.4888 0.8778 8 6 3.5264 3.6843 -1.2909 9 6 4.7448 4.5314 -1.6982 10 6 5.8368 4.2701 -0.6402 11 1 5.8107 5.0382 0.1327 12 7 7.1626 4.2218 -1.2710 13 6 7.8256 5.5309 -1.2035 14 6 8.1223 5.8856 0.2308 15 1 7.4344 6.5048 0.7874 16 6 9.2720 5.4196 0.8325 17 7 9.6634 5.9241 1.9822 18 14 10.2737 4.0716 0.0146 19 1 11.3647 4.6824 -0.7865 20 1 10.8587 3.1887 1.0556 21 1 9.3941 3.2720 -0.8754 22 6 6.9273 6.6116 -1.8400 23 6 7.9225 7.5535 -2.5639 24 6 8.9784 6.5695 -3.1260 25 6 9.1292 5.5043 -2.0204 26 6 5.4682 2.8870 -0.0478 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2890 2.9691 -2.0783 33 1 2.6686 4.3295 -1.1017 34 1 5.0985 4.2273 -2.6833 35 1 4.4787 5.5883 -1.7064 36 1 7.7358 3.5043 -0.8532 37 1 10.4725 5.5965 2.4054 38 1 6.2385 6.1623 -2.5553 39 1 6.3789 7.1541 -1.0699 40 1 8.3787 8.2482 -1.8586 41 1 7.4294 8.0939 -3.3719 42 1 9.9257 7.0816 -3.2943 43 1 8.6212 6.1132 -4.0493 44 1 9.9765 5.7487 -1.3797 45 1 9.2705 4.5198 -2.4663 46 1 5.8821 2.7734 0.9542 47 1 5.8085 2.0835 -0.7009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257045811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:00 Heat of formation + Delta-G solvation = -113.121611 kcal Electronic energy + Delta-G solvation = -25215.037801 eV Core-core repulsion = 21782.353562 eV Total energy + Delta-G solvation = -3432.684239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73995 -40.20421 -38.44111 -37.45901 -34.66638 -33.88735 -32.58311 -30.39929 -29.74818 -29.27878 -27.34362 -25.47881 -24.59495 -23.10005 -21.85685 -20.96921 -20.83997 -20.49877 -18.74178 -18.21260 -17.83246 -17.31264 -17.00008 -16.65086 -16.19546 -15.91009 -15.43523 -14.98467 -14.90646 -14.50627 -14.28066 -14.05664 -13.95201 -13.67372 -13.39537 -13.05069 -12.86806 -12.74747 -12.50948 -12.41553 -12.34642 -12.24256 -12.13465 -12.05888 -11.68343 -11.66508 -11.52470 -11.47223 -11.34526 -11.19249 -11.12437 -11.08672 -10.82137 -10.70951 -8.92993 -8.33248 -6.33350 1.12881 1.28129 1.34366 1.42279 1.64710 2.27585 2.98472 3.41013 3.58749 3.65050 3.96968 3.99538 4.02895 4.08806 4.11272 4.16065 4.29417 4.35018 4.50091 4.56065 4.58823 4.65222 4.75581 4.82117 4.86180 4.89286 4.93090 4.96717 4.99449 5.04622 5.09497 5.14056 5.17648 5.25180 5.27384 5.32114 5.38520 5.42597 5.45164 5.55458 5.57308 5.65447 5.75640 6.22578 6.66144 6.70406 6.73166 6.85428 7.34179 8.82620 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004194 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.311597 B = 6675.188516 C = 7386.252273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.356 6.356 4 C 0.475 3.525 5 O -0.540 6.540 6 C -0.081 4.081 7 H 0.126 0.874 8 C -0.096 4.096 9 C -0.106 4.106 10 C 0.090 3.910 11 H 0.040 0.960 12 N -0.678 5.678 13 C 0.201 3.799 14 C -0.525 4.525 15 H 0.028 0.972 16 C 0.021 3.979 17 N -0.942 5.942 18 Si 0.938 3.062 19 H -0.279 1.279 20 H -0.315 1.315 21 H -0.224 1.224 22 C -0.095 4.095 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.141 4.141 26 C -0.110 4.110 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.322 0.678 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 -6.996 -9.355 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.272 6.272 4 C 0.320 3.680 5 O -0.430 6.430 6 C -0.101 4.101 7 H 0.144 0.856 8 C -0.134 4.134 9 C -0.144 4.144 10 C -0.021 4.021 11 H 0.058 0.942 12 N -0.310 5.310 13 C 0.112 3.888 14 C -0.564 4.564 15 H 0.046 0.954 16 C -0.177 4.177 17 N -0.582 5.582 18 Si 0.767 3.233 19 H -0.206 1.206 20 H -0.244 1.244 21 H -0.148 1.148 22 C -0.133 4.133 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.178 4.178 26 C -0.148 4.148 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.283 -7.214 -9.878 20.365 hybrid contribution 1.531 -0.663 1.784 2.443 sum -14.752 -7.877 -8.094 18.579 Atomic orbital electron populations 1.21814 0.90106 1.04363 1.03843 1.23313 0.97311 0.79394 1.02373 1.86527 1.23610 1.33556 1.83542 1.23922 0.80661 0.92613 0.70844 1.90644 1.61280 1.44209 1.46869 1.21890 0.95269 0.89333 1.03596 0.85638 1.22046 0.99057 0.98449 0.93838 1.22258 0.93123 0.99832 0.99159 1.22142 0.90288 0.94731 0.94906 0.94165 1.61543 1.03993 1.07373 1.58043 1.19509 0.90921 0.87287 0.91127 1.21774 1.05613 1.31162 0.97892 0.95405 1.25848 0.98322 0.98166 0.95360 1.70115 1.24682 1.43100 1.20258 0.86302 0.79730 0.79787 0.77489 1.20557 1.24393 1.14754 1.22361 0.97245 0.95560 0.98139 1.22378 0.96725 0.97142 0.99055 1.22211 0.98976 0.95874 0.97410 1.22615 0.97913 0.99558 0.97757 1.22577 0.93040 0.98306 1.00847 0.91009 0.88236 0.91256 0.91431 0.91717 0.91065 0.88360 0.90676 0.91005 0.85883 0.92946 0.90020 0.94351 0.93797 0.89690 0.91998 0.89994 0.94112 0.91992 0.92858 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 10.29 71.98 0.74 -0.92 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.36 -8.34 10.22 -51.45 -0.53 -8.87 16 4 C 0.48 13.34 7.12 71.24 0.51 13.84 16 5 O -0.54 -18.59 15.50 21.98 0.34 -18.25 16 6 C -0.08 -2.16 3.36 -10.46 -0.04 -2.19 16 7 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 8 C -0.10 -2.16 6.36 31.32 0.20 -1.96 16 9 C -0.11 -2.90 4.78 31.32 0.15 -2.75 16 10 C 0.09 3.21 2.55 46.00 0.12 3.32 16 11 H 0.04 1.69 6.75 -2.39 -0.02 1.68 16 12 N -0.68 -27.22 5.79 -442.92 -2.57 -29.79 16 13 C 0.20 8.73 0.48 3.51 0.00 8.73 16 14 C -0.52 -28.58 7.52 25.60 0.19 -28.39 16 15 H 0.03 1.71 7.75 -2.91 -0.02 1.69 16 16 C 0.02 1.22 5.14 84.65 0.43 1.65 16 17 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 18 Si 0.94 44.94 23.04 68.60 1.58 46.52 16 19 H -0.28 -13.05 6.72 99.48 0.67 -12.39 16 20 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 21 H -0.22 -9.66 4.49 99.48 0.45 -9.21 16 22 C -0.10 -3.55 4.56 31.70 0.14 -3.40 16 23 C -0.12 -3.88 6.91 31.91 0.22 -3.66 16 24 C -0.11 -3.58 6.83 31.67 0.22 -3.36 16 25 C -0.14 -5.84 3.94 31.32 0.12 -5.72 16 26 C -0.11 -3.69 5.25 31.89 0.17 -3.52 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.26 8.13 -2.39 -0.02 1.25 16 31 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 32 H 0.07 1.52 7.83 -2.39 -0.02 1.50 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.08 7.97 -2.39 -0.02 2.07 16 35 H 0.07 1.87 7.26 -2.39 -0.02 1.85 16 36 H 0.32 13.89 5.13 -89.70 -0.46 13.43 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.08 2.66 5.90 -2.39 -0.01 2.65 16 39 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.04 1.91 4.11 -2.39 -0.01 1.90 16 45 H 0.06 2.46 6.69 -2.39 -0.02 2.44 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 2.59 7.50 -2.39 -0.02 2.57 16 Total: -1.00 -67.62 348.64 2.94 -64.67 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.19 Total: 30.95 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.62 Total: -26.96 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -2.27 Total: -88.06 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.18 Total: -27.11 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.58 Total: 46.52 kcal Total: -67.62 2.94 -64.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.449 kcal (2) G-P(sol) polarization free energy of solvation -67.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds