Wall clock time and date at job start Tue Mar 31 2020 08:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47276 * 2 1 4 4 C 1.34227 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20818 * 119.99897 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99627 * 179.97438 * 4 3 2 7 7 H 1.09000 * 110.54146 * 298.84253 * 6 4 3 8 8 C 1.54266 * 110.48603 * 61.45870 * 6 4 3 9 9 C 1.53873 * 106.60007 * 142.28177 * 8 6 4 10 10 C 1.54261 * 106.59849 * 0.02562 * 9 8 6 11 11 H 1.09006 * 110.49009 * 95.19737 * 10 9 8 12 12 N 1.46903 * 110.48838 * 217.70683 * 10 9 8 13 13 C 1.46896 * 111.00392 * 243.22442 * 12 10 9 14 14 C 1.50700 * 110.01675 * 59.91660 * 13 12 10 15 15 H 1.08002 * 119.99734 * 242.37947 * 14 13 12 16 16 C 1.37874 * 119.99978 * 62.38248 * 14 13 12 17 17 N 1.31522 * 120.00058 * 6.99721 * 16 14 13 18 18 Si 1.86795 * 120.00163 * 187.27480 * 16 14 13 19 19 H 1.48502 * 109.47449 * 179.72506 * 18 16 14 20 20 H 1.48509 * 109.46866 * 299.72253 * 18 16 14 21 21 H 1.48497 * 109.47242 * 59.72237 * 18 16 14 22 22 C 1.54264 * 110.03295 * 181.31134 * 13 12 10 23 23 C 1.54961 * 104.16390 * 95.75461 * 22 13 12 24 24 C 1.54896 * 102.77568 * 37.88300 * 23 22 13 25 25 C 1.53873 * 110.03049 * 298.52728 * 13 12 10 26 26 C 1.54887 * 104.19784 * 336.38593 * 10 9 8 27 27 H 1.09001 * 109.46785 * 300.00374 * 1 2 3 28 28 H 1.09002 * 109.46884 * 59.99792 * 1 2 3 29 29 H 1.08991 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46700 * 239.99934 * 2 1 3 31 31 H 1.08999 * 109.46694 * 119.99708 * 2 1 3 32 32 H 1.09003 * 110.03058 * 22.99790 * 8 6 4 33 33 H 1.09004 * 110.07217 * 261.59253 * 8 6 4 34 34 H 1.08993 * 110.03572 * 240.71279 * 9 8 6 35 35 H 1.09007 * 110.07267 * 119.30621 * 9 8 6 36 36 H 1.00900 * 110.99827 * 7.18036 * 12 10 9 37 37 H 0.96994 * 120.00043 * 183.20194 * 17 16 14 38 38 H 1.08997 * 110.48730 * 214.40082 * 22 13 12 39 39 H 1.08999 * 110.48757 * 337.04054 * 22 13 12 40 40 H 1.09007 * 110.71917 * 279.57671 * 23 22 13 41 41 H 1.09000 * 110.92585 * 156.29551 * 23 22 13 42 42 H 1.08999 * 110.48536 * 203.40181 * 24 23 22 43 43 H 1.09000 * 110.48058 * 80.76841 * 24 23 22 44 44 H 1.08998 * 110.03675 * 359.95210 * 25 13 12 45 45 H 1.08995 * 110.03511 * 121.38266 * 25 13 12 46 46 H 1.09004 * 110.76179 * 156.25565 * 26 10 9 47 47 H 1.09000 * 110.75559 * 279.63042 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.6124 3.4785 -0.8946 8 6 3.4885 3.7009 1.2688 9 6 4.6954 4.5509 1.7030 10 6 5.8188 4.2747 0.6826 11 1 5.8183 5.0332 -0.1002 12 7 7.1246 4.2320 1.3544 13 6 7.9998 5.3090 0.8730 14 6 7.3662 6.6490 1.1450 15 1 7.1068 7.3004 0.3235 16 6 7.1177 7.0434 2.4425 17 7 7.5563 6.3157 3.4465 18 14 6.1516 8.6073 2.7746 19 1 6.0166 8.8039 4.2404 20 1 6.8676 9.7664 2.1836 21 1 4.8027 8.4949 2.1640 22 6 9.3743 5.2235 1.5680 23 6 10.2556 4.4313 0.5695 24 6 9.7804 4.9649 -0.8048 25 6 8.2577 5.1443 -0.6350 26 6 5.4657 2.8856 0.0955 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2252 2.9959 2.0573 33 1 2.6384 4.3459 1.0459 34 1 5.0179 4.2584 2.7022 35 1 4.4320 5.6086 1.6907 36 1 7.0171 4.2742 2.3567 37 1 7.3419 6.5679 4.3582 38 1 9.7831 6.2210 1.7291 39 1 9.2911 4.6872 2.5133 40 1 10.0675 3.3609 0.6542 41 1 11.3121 4.6498 0.7245 42 1 9.9940 4.2399 -1.5901 43 1 10.2547 5.9207 -1.0275 44 1 7.7341 4.2647 -1.0095 45 1 7.9246 6.0335 -1.1702 46 1 5.9098 2.7591 -0.8919 47 1 5.7843 2.0894 0.7684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257045812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:04 Heat of formation + Delta-G solvation = -112.051227 kcal Electronic energy + Delta-G solvation = -25271.280800 eV Core-core repulsion = 21838.642976 eV Total energy + Delta-G solvation = -3432.637823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49918 -38.32486 -36.93460 -36.12438 -32.93206 -31.97496 -31.35765 -28.54859 -27.80496 -27.49448 -25.59919 -23.92197 -23.29752 -21.82035 -20.10609 -19.70490 -19.05600 -18.37663 -17.42762 -16.72973 -16.44004 -16.03488 -15.33000 -14.71201 -14.39700 -14.04389 -13.84473 -13.68720 -13.16300 -12.99404 -12.95999 -12.73686 -12.09623 -12.03656 -11.83335 -11.66859 -11.57270 -11.39186 -10.97665 -10.88264 -10.76729 -10.61630 -10.58564 -10.51391 -10.37244 -10.14475 -10.04029 -9.89689 -9.74533 -9.57400 -9.40990 -9.35611 -9.10692 -8.38644 -6.94837 -6.01015 -4.13874 2.36363 2.74213 3.24486 3.31131 3.34104 4.37086 4.68761 4.76026 4.83300 4.92259 5.09025 5.10859 5.19509 5.34503 5.58399 5.58522 5.74478 5.78620 5.81827 5.82850 5.91913 5.95049 5.98058 6.05862 6.14469 6.36955 6.48327 6.52767 6.55577 6.59639 6.66580 6.74519 6.79338 6.85778 6.94765 7.00594 7.06354 7.12778 7.17524 7.52387 7.64060 7.80843 7.85533 7.90228 8.25941 8.75120 8.93002 9.10467 9.54789 10.96773 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.004524 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.570482 B = 6188.314577 C = 7378.918449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.470 3.530 5 O -0.507 6.507 6 C -0.089 4.089 7 H 0.107 0.893 8 C -0.107 4.107 9 C -0.132 4.132 10 C 0.105 3.895 11 H 0.073 0.927 12 N -0.674 5.674 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.051 0.949 16 C 0.075 3.925 17 N -0.884 5.884 18 Si 0.878 3.122 19 H -0.288 1.288 20 H -0.279 1.279 21 H -0.278 1.278 22 C -0.075 4.075 23 C -0.129 4.129 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.096 4.096 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.352 0.648 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 -7.960 -5.384 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.278 6.278 4 C 0.313 3.687 5 O -0.394 6.394 6 C -0.109 4.109 7 H 0.125 0.875 8 C -0.145 4.145 9 C -0.170 4.170 10 C -0.007 4.007 11 H 0.091 0.909 12 N -0.306 5.306 13 C 0.143 3.857 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.127 4.127 17 N -0.522 5.522 18 Si 0.706 3.294 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.113 4.113 23 C -0.166 4.166 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.173 0.827 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.860 -8.734 -5.582 13.636 hybrid contribution -1.096 1.567 0.701 2.036 sum -9.956 -7.167 -4.881 13.203 Atomic orbital electron populations 1.21794 0.92848 1.02727 1.03491 1.22971 0.95215 0.80879 1.02425 1.86545 1.25217 1.31772 1.84228 1.23989 0.80029 0.93063 0.71635 1.90644 1.60369 1.43205 1.45183 1.22039 0.98426 0.88662 1.01731 0.87458 1.22056 0.99271 0.98271 0.94902 1.22643 0.94777 0.99474 1.00133 1.21968 0.89377 0.93311 0.95996 0.90929 1.61040 1.09875 1.48142 1.11539 1.19067 0.90085 0.87869 0.88694 1.21797 1.40642 1.02992 0.91923 0.93094 1.24887 0.95191 0.96335 0.96317 1.69889 1.43861 1.39654 0.98823 0.86889 0.80902 0.84539 0.77048 1.21390 1.20438 1.20336 1.22109 0.94473 0.97935 0.96810 1.22597 0.97929 0.99767 0.96340 1.22253 0.97368 0.99060 0.96846 1.22291 0.94262 0.99390 0.98795 1.22602 0.88741 1.00367 1.01707 0.91490 0.91551 0.90467 0.91458 0.91401 0.92152 0.91356 0.91534 0.91560 0.82692 0.92857 0.92908 0.92068 0.92595 0.94073 0.93856 0.93030 0.93045 0.93397 0.91762 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.36 -4.85 10.20 -39.25 -0.40 -5.25 16 4 C 0.47 7.21 7.12 36.01 0.26 7.46 16 5 O -0.51 -9.05 15.51 -18.74 -0.29 -9.35 16 6 C -0.09 -1.32 3.36 -90.12 -0.30 -1.62 16 7 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 8 C -0.11 -1.60 6.34 -25.61 -0.16 -1.76 16 9 C -0.13 -2.40 6.42 -25.62 -0.16 -2.56 16 10 C 0.11 2.02 1.91 -66.06 -0.13 1.89 16 11 H 0.07 1.49 6.42 -51.93 -0.33 1.16 16 12 N -0.67 -14.63 6.00 -91.37 -0.55 -15.17 16 13 C 0.23 5.26 0.48 -131.64 -0.06 5.20 16 14 C -0.53 -13.31 6.77 -34.44 -0.23 -13.55 16 15 H 0.05 1.31 7.34 -52.49 -0.39 0.92 16 16 C 0.08 1.90 5.24 -17.82 -0.09 1.80 16 17 N -0.88 -22.68 10.65 55.43 0.59 -22.09 16 18 Si 0.88 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.07 -1.71 4.79 -25.03 -0.12 -1.83 16 23 C -0.13 -2.51 6.91 -24.70 -0.17 -2.68 16 24 C -0.12 -2.20 6.83 -25.07 -0.17 -2.37 16 25 C -0.11 -2.25 5.23 -25.62 -0.13 -2.38 16 26 C -0.10 -1.64 5.53 -24.75 -0.14 -1.78 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.06 0.88 7.83 -51.93 -0.41 0.48 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.30 7.40 -51.93 -0.38 0.91 16 35 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.35 8.30 6.18 -39.29 -0.24 8.06 16 37 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 38 H 0.05 1.30 7.85 -51.93 -0.41 0.90 16 39 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.03 7.06 -51.93 -0.37 0.66 16 45 H 0.05 0.99 7.37 -51.93 -0.38 0.61 16 46 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 47 H 0.08 1.51 7.53 -51.93 -0.39 1.12 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -26.39 363.22 -9.52 -35.91 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.32 Total: 9.48 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.01 Total: -14.09 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.04 Total: -37.27 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.69 Total: -14.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.39 -9.52 -35.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.141 kcal (2) G-P(sol) polarization free energy of solvation -26.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds