Wall clock time and date at job start Tue Mar 31 2020 08:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47276 * 2 1 4 4 C 1.34227 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20818 * 119.99897 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99627 * 179.97438 * 4 3 2 7 7 H 1.09000 * 110.54146 * 298.84253 * 6 4 3 8 8 C 1.54266 * 110.48603 * 61.45870 * 6 4 3 9 9 C 1.53873 * 106.60007 * 142.28177 * 8 6 4 10 10 C 1.54261 * 106.59849 * 0.02562 * 9 8 6 11 11 H 1.09006 * 110.49009 * 95.19737 * 10 9 8 12 12 N 1.46903 * 110.48838 * 217.70683 * 10 9 8 13 13 C 1.46896 * 111.00392 * 243.22442 * 12 10 9 14 14 C 1.50700 * 110.01675 * 59.91660 * 13 12 10 15 15 H 1.08002 * 119.99734 * 242.37947 * 14 13 12 16 16 C 1.37874 * 119.99978 * 62.38248 * 14 13 12 17 17 N 1.31522 * 120.00058 * 6.99721 * 16 14 13 18 18 Si 1.86795 * 120.00163 * 187.27480 * 16 14 13 19 19 H 1.48502 * 109.47449 * 179.72506 * 18 16 14 20 20 H 1.48509 * 109.46866 * 299.72253 * 18 16 14 21 21 H 1.48497 * 109.47242 * 59.72237 * 18 16 14 22 22 C 1.54264 * 110.03295 * 181.31134 * 13 12 10 23 23 C 1.54961 * 104.16390 * 95.75461 * 22 13 12 24 24 C 1.54896 * 102.77568 * 37.88300 * 23 22 13 25 25 C 1.53873 * 110.03049 * 298.52728 * 13 12 10 26 26 C 1.54887 * 104.19784 * 336.38593 * 10 9 8 27 27 H 1.09001 * 109.46785 * 300.00374 * 1 2 3 28 28 H 1.09002 * 109.46884 * 59.99792 * 1 2 3 29 29 H 1.08991 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46700 * 239.99934 * 2 1 3 31 31 H 1.08999 * 109.46694 * 119.99708 * 2 1 3 32 32 H 1.09003 * 110.03058 * 22.99790 * 8 6 4 33 33 H 1.09004 * 110.07217 * 261.59253 * 8 6 4 34 34 H 1.08993 * 110.03572 * 240.71279 * 9 8 6 35 35 H 1.09007 * 110.07267 * 119.30621 * 9 8 6 36 36 H 1.00900 * 110.99827 * 7.18036 * 12 10 9 37 37 H 0.96994 * 120.00043 * 183.20194 * 17 16 14 38 38 H 1.08997 * 110.48730 * 214.40082 * 22 13 12 39 39 H 1.08999 * 110.48757 * 337.04054 * 22 13 12 40 40 H 1.09007 * 110.71917 * 279.57671 * 23 22 13 41 41 H 1.09000 * 110.92585 * 156.29551 * 23 22 13 42 42 H 1.08999 * 110.48536 * 203.40181 * 24 23 22 43 43 H 1.09000 * 110.48058 * 80.76841 * 24 23 22 44 44 H 1.08998 * 110.03675 * 359.95210 * 25 13 12 45 45 H 1.08995 * 110.03511 * 121.38266 * 25 13 12 46 46 H 1.09004 * 110.76179 * 156.25565 * 26 10 9 47 47 H 1.09000 * 110.75559 * 279.63042 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.6124 3.4785 -0.8946 8 6 3.4885 3.7009 1.2688 9 6 4.6954 4.5509 1.7030 10 6 5.8188 4.2747 0.6826 11 1 5.8183 5.0332 -0.1002 12 7 7.1246 4.2320 1.3544 13 6 7.9998 5.3090 0.8730 14 6 7.3662 6.6490 1.1450 15 1 7.1068 7.3004 0.3235 16 6 7.1177 7.0434 2.4425 17 7 7.5563 6.3157 3.4465 18 14 6.1516 8.6073 2.7746 19 1 6.0166 8.8039 4.2404 20 1 6.8676 9.7664 2.1836 21 1 4.8027 8.4949 2.1640 22 6 9.3743 5.2235 1.5680 23 6 10.2556 4.4313 0.5695 24 6 9.7804 4.9649 -0.8048 25 6 8.2577 5.1443 -0.6350 26 6 5.4657 2.8856 0.0955 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2252 2.9959 2.0573 33 1 2.6384 4.3459 1.0459 34 1 5.0179 4.2584 2.7022 35 1 4.4320 5.6086 1.6907 36 1 7.0171 4.2742 2.3567 37 1 7.3419 6.5679 4.3582 38 1 9.7831 6.2210 1.7291 39 1 9.2911 4.6872 2.5133 40 1 10.0675 3.3609 0.6542 41 1 11.3121 4.6498 0.7245 42 1 9.9940 4.2399 -1.5901 43 1 10.2547 5.9207 -1.0275 44 1 7.7341 4.2647 -1.0095 45 1 7.9246 6.0335 -1.1702 46 1 5.9098 2.7591 -0.8919 47 1 5.7843 2.0894 0.7684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257045812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:03 Heat of formation + Delta-G solvation = -124.652375 kcal Electronic energy + Delta-G solvation = -25271.827227 eV Core-core repulsion = 21838.642976 eV Total energy + Delta-G solvation = -3433.184250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69050 -39.89573 -38.30653 -37.41646 -34.68551 -33.35312 -32.49239 -29.94268 -29.40342 -29.17865 -27.24177 -25.57623 -24.37975 -22.94446 -21.64586 -20.97073 -20.62014 -20.14212 -18.69309 -18.26322 -17.71816 -17.27910 -16.70365 -16.57750 -16.00473 -15.48060 -15.10541 -14.98128 -14.77583 -14.26510 -14.20281 -13.74269 -13.66955 -13.32664 -13.27608 -13.06144 -12.89912 -12.78468 -12.54526 -12.46810 -12.40677 -12.21551 -12.06670 -11.75798 -11.67460 -11.57539 -11.50548 -11.45644 -11.28551 -11.19149 -11.15804 -11.03029 -10.88601 -10.31364 -8.73400 -7.93323 -6.13429 1.16597 1.38592 1.43096 1.46808 1.68949 2.45487 3.21855 3.47269 3.67290 3.80276 4.01457 4.09756 4.16076 4.18984 4.21316 4.30750 4.36033 4.42725 4.51499 4.57975 4.70802 4.74122 4.86766 4.87776 4.93339 4.97264 5.03887 5.08445 5.12698 5.13802 5.17451 5.25119 5.31994 5.35975 5.39071 5.43953 5.47011 5.51391 5.56845 5.75490 5.82501 5.86916 5.99374 6.36024 6.74370 6.87609 7.10195 7.25099 7.57874 8.99208 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.004524 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.570482 B = 6188.314577 C = 7378.918449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.359 6.359 4 C 0.475 3.525 5 O -0.537 6.537 6 C -0.082 4.082 7 H 0.133 0.867 8 C -0.096 4.096 9 C -0.127 4.127 10 C 0.104 3.896 11 H 0.061 0.939 12 N -0.675 5.675 13 C 0.225 3.775 14 C -0.542 4.542 15 H 0.039 0.961 16 C 0.045 3.955 17 N -0.899 5.899 18 Si 0.922 3.078 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.071 4.071 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.106 4.106 26 C -0.086 4.086 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.338 0.662 37 H 0.258 0.742 38 H 0.025 0.975 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 -8.591 -6.730 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.275 6.275 4 C 0.320 3.680 5 O -0.426 6.426 6 C -0.102 4.102 7 H 0.151 0.849 8 C -0.134 4.134 9 C -0.165 4.165 10 C -0.007 4.007 11 H 0.079 0.921 12 N -0.305 5.305 13 C 0.136 3.864 14 C -0.582 4.582 15 H 0.057 0.943 16 C -0.156 4.156 17 N -0.538 5.538 18 Si 0.750 3.250 19 H -0.216 1.216 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.110 4.110 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.125 4.125 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.157 0.843 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.239 -9.362 -6.945 15.515 hybrid contribution -0.694 1.753 1.135 2.201 sum -10.933 -7.609 -5.810 14.532 Atomic orbital electron populations 1.21815 0.90259 1.04352 1.03739 1.23303 0.97220 0.79438 1.02422 1.86532 1.23855 1.33561 1.83601 1.23920 0.80558 0.92645 0.70883 1.90638 1.61193 1.44085 1.46722 1.21967 0.96519 0.88970 1.02718 0.84915 1.21964 0.98345 0.98104 0.95017 1.22515 0.95975 0.99114 0.98945 1.21989 0.88682 0.94300 0.95717 0.92076 1.61090 1.11237 1.47515 1.10636 1.19140 0.89940 0.87172 0.90191 1.21996 1.40698 1.03887 0.91593 0.94291 1.25318 0.95857 0.98161 0.96288 1.69988 1.44480 1.40568 0.98741 0.86195 0.80150 0.82085 0.76608 1.21564 1.20840 1.19759 1.21962 0.95647 0.96593 0.96806 1.22518 0.98295 0.99306 0.95673 1.22233 0.95651 1.00057 0.97009 1.22222 0.95943 0.99310 0.96965 1.22402 0.90840 0.98067 1.01148 0.91413 0.91085 0.88164 0.91255 0.91746 0.91809 0.89000 0.93429 0.93104 0.84291 0.93226 0.95589 0.94429 0.92295 0.92266 0.91165 0.92598 0.92505 0.94011 0.91316 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.05 0.97 6.19 71.98 0.45 1.41 16 3 O -0.36 -8.88 10.20 -51.38 -0.52 -9.41 16 4 C 0.48 13.81 7.12 71.24 0.51 14.32 16 5 O -0.54 -18.70 15.51 21.99 0.34 -18.35 16 6 C -0.08 -2.29 3.36 -10.47 -0.04 -2.33 16 7 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 8 C -0.10 -2.72 6.34 31.32 0.20 -2.52 16 9 C -0.13 -4.62 6.42 31.32 0.20 -4.42 16 10 C 0.10 4.01 1.91 45.99 0.09 4.10 16 11 H 0.06 2.50 6.42 -2.38 -0.02 2.48 16 12 N -0.67 -29.76 6.00 -442.98 -2.66 -32.41 16 13 C 0.23 10.31 0.48 3.51 0.00 10.31 16 14 C -0.54 -27.45 6.77 25.60 0.17 -27.27 16 15 H 0.04 2.03 7.34 -2.91 -0.02 2.00 16 16 C 0.04 2.29 5.24 84.65 0.44 2.73 16 17 N -0.90 -47.29 10.65 21.45 0.23 -47.06 16 18 Si 0.92 41.59 29.54 68.60 2.03 43.62 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C -0.07 -3.31 4.79 31.69 0.15 -3.16 16 23 C -0.12 -4.56 6.91 31.91 0.22 -4.34 16 24 C -0.11 -3.97 6.83 31.67 0.22 -3.75 16 25 C -0.11 -4.28 5.23 31.32 0.16 -4.12 16 26 C -0.09 -2.90 5.53 31.88 0.18 -2.72 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 32 H 0.06 1.77 7.83 -2.39 -0.02 1.75 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.90 7.40 -2.39 -0.02 1.88 16 35 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.34 16.46 6.18 -89.69 -0.55 15.91 16 37 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 38 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 39 H 0.04 1.88 7.58 -2.39 -0.02 1.86 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 2.20 7.06 -2.39 -0.02 2.18 16 45 H 0.04 1.71 7.37 -2.39 -0.02 1.69 16 46 H 0.07 2.23 8.02 -2.39 -0.02 2.22 16 47 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16 Total: -1.00 -57.16 363.22 3.49 -53.67 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.38 Total: 32.77 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.69 Total: -22.83 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.43 Total: -79.48 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.18 Total: -27.76 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -57.16 3.49 -53.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.982 kcal (2) G-P(sol) polarization free energy of solvation -57.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds