Wall clock time and date at job start Tue Mar 31 2020 08:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45193 * 109.47006 * 2 1 4 4 C 1.34227 * 117.00070 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.50707 * 120.00070 * 180.02562 * 4 3 2 7 7 H 1.08995 * 110.01557 * 300.06376 * 6 4 3 8 8 C 1.54266 * 110.03163 * 61.45599 * 6 4 3 9 9 C 1.54897 * 104.19300 * 142.89198 * 8 6 4 10 10 C 1.54880 * 102.75097 * 322.05824 * 9 8 6 11 11 H 1.09004 * 110.48644 * 279.13455 * 10 9 8 12 12 N 1.46898 * 110.48853 * 156.61842 * 10 9 8 13 13 C 1.46901 * 110.99785 * 92.68362 * 12 10 9 14 14 C 1.50700 * 110.01573 * 57.03582 * 13 12 10 15 15 H 1.08004 * 119.99772 * 238.51107 * 14 13 12 16 16 C 1.37880 * 120.00113 * 58.51208 * 14 13 12 17 17 N 1.31509 * 119.99712 * 352.41024 * 16 14 13 18 18 Si 1.86802 * 119.99914 * 172.41254 * 16 14 13 19 19 H 1.48498 * 109.46917 * 89.99675 * 18 16 14 20 20 H 1.48500 * 109.47094 * 209.99741 * 18 16 14 21 21 H 1.48504 * 109.47021 * 329.99899 * 18 16 14 22 22 C 1.54263 * 110.03396 * 295.59043 * 13 12 10 23 23 C 1.54885 * 104.19847 * 217.10350 * 22 13 12 24 24 C 1.54895 * 102.74554 * 37.94389 * 23 22 13 25 25 C 1.53879 * 110.03255 * 178.42630 * 13 12 10 26 26 C 1.53877 * 110.03109 * 178.62411 * 6 4 3 27 27 H 1.09000 * 109.47306 * 60.00088 * 1 2 3 28 28 H 1.09007 * 109.47528 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47423 * 299.99722 * 1 2 3 30 30 H 1.09000 * 109.46522 * 240.00321 * 2 1 3 31 31 H 1.09003 * 109.46982 * 120.00321 * 2 1 3 32 32 H 1.08993 * 110.48619 * 261.56999 * 8 6 4 33 33 H 1.09004 * 110.48752 * 24.08547 * 8 6 4 34 34 H 1.09004 * 110.74835 * 80.37486 * 9 8 6 35 35 H 1.08998 * 110.75140 * 203.55656 * 9 8 6 36 36 H 1.00896 * 111.00003 * 328.73316 * 12 10 9 37 37 H 0.97005 * 119.99802 * 185.02174 * 17 16 14 38 38 H 1.08997 * 110.48385 * 335.78746 * 22 13 12 39 39 H 1.09002 * 110.48127 * 98.42677 * 22 13 12 40 40 H 1.08995 * 110.76098 * 279.63135 * 23 22 13 41 41 H 1.09004 * 110.75379 * 156.25257 * 23 22 13 42 42 H 1.09002 * 110.48396 * 203.37135 * 24 23 22 43 43 H 1.09007 * 110.59570 * 80.78861 * 24 23 22 44 44 H 1.08998 * 110.03050 * 238.56999 * 25 13 12 45 45 H 1.08997 * 110.03001 * 359.94895 * 25 13 12 46 46 H 1.09009 * 110.03088 * 359.97438 * 26 6 4 47 47 H 1.08994 * 110.03632 * 121.43026 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5894 3.4786 -0.8852 8 6 3.4822 3.6901 1.2744 9 6 4.7208 4.5360 1.6611 10 6 5.8995 3.5874 1.3299 11 1 6.0475 2.8674 2.1348 12 7 7.1291 4.3568 1.0975 13 6 7.9073 4.4924 2.3360 14 6 8.2270 3.1303 2.8960 15 1 7.9033 2.8663 3.8920 16 6 8.9328 2.2211 2.1368 17 7 9.1974 2.4827 0.8755 18 14 9.5130 0.6178 2.9000 19 1 8.4672 -0.4215 2.7231 20 1 10.7657 0.1778 2.2349 21 1 9.7672 0.8227 4.3487 22 6 7.1145 5.3175 3.3706 23 6 8.1941 6.1650 4.0883 24 6 9.1598 6.5358 2.9354 25 6 9.2077 5.2671 2.0593 26 6 5.4576 2.8721 0.0364 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.6305 4.3360 1.0614 33 1 3.2361 2.9852 2.0686 34 1 4.7731 5.4424 1.0578 35 1 4.7050 4.7809 2.7231 36 1 6.9204 5.2608 0.7008 37 1 9.6295 1.8135 0.3217 38 1 6.3923 5.9632 2.8711 39 1 6.6126 4.6592 4.0798 40 1 8.7074 5.5746 4.8473 41 1 7.7538 7.0608 4.5265 42 1 10.1505 6.7668 3.3270 43 1 8.7700 7.3789 2.3649 44 1 10.0700 4.6581 2.3309 45 1 9.2618 5.5416 1.0059 46 1 5.7869 1.8331 0.0535 47 1 5.8731 3.3820 -0.8327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257045813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:07 Heat of formation + Delta-G solvation = -101.244346 kcal Electronic energy + Delta-G solvation = -25427.213058 eV Core-core repulsion = 21995.043856 eV Total energy + Delta-G solvation = -3432.169202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44964 -38.38744 -36.92857 -36.02354 -32.70386 -31.92214 -31.39398 -28.54492 -27.70697 -27.48896 -25.58045 -23.77490 -23.32292 -21.81643 -20.10637 -19.66710 -18.90908 -18.56905 -17.58405 -16.49901 -16.27468 -16.07626 -15.02003 -14.74598 -14.33938 -14.17756 -13.88243 -13.67500 -13.08438 -12.96996 -12.71994 -12.35790 -12.20573 -12.08216 -11.94108 -11.71507 -11.35930 -11.21431 -11.15865 -10.85544 -10.74713 -10.50860 -10.49240 -10.46312 -10.40840 -10.13785 -10.06174 -9.93488 -9.84933 -9.58058 -9.38164 -9.26254 -8.67714 -8.25619 -6.67452 -5.73305 -3.86927 2.47545 2.82041 3.40039 3.47471 3.49830 4.56505 4.76141 4.82086 4.90051 4.99119 5.05692 5.17701 5.29784 5.44923 5.62002 5.63916 5.69505 5.76128 5.78186 5.80576 5.82675 5.95372 5.97459 6.11149 6.22705 6.33357 6.36472 6.42786 6.48719 6.57953 6.61293 6.65970 6.73702 6.80569 6.91021 6.96395 6.96798 7.20827 7.24856 7.39519 7.48831 7.84789 7.99948 8.01572 8.36963 8.79122 8.99106 9.31579 9.78070 11.26151 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.004891 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.739409 B = 5723.733411 C = 6827.657644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.464 3.536 5 O -0.499 6.499 6 C -0.086 4.086 7 H 0.101 0.899 8 C -0.105 4.105 9 C -0.158 4.158 10 C 0.110 3.890 11 H 0.096 0.904 12 N -0.635 5.635 13 C 0.248 3.752 14 C -0.525 4.525 15 H 0.050 0.950 16 C 0.089 3.911 17 N -0.833 5.833 18 Si 0.866 3.134 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.087 4.087 26 C -0.104 4.104 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.298 0.702 37 H 0.252 0.748 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 2.565 -1.484 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.385 6.385 6 C -0.105 4.105 7 H 0.119 0.881 8 C -0.143 4.143 9 C -0.198 4.198 10 C -0.001 4.001 11 H 0.114 0.886 12 N -0.261 5.261 13 C 0.159 3.841 14 C -0.564 4.564 15 H 0.068 0.932 16 C -0.119 4.119 17 N -0.466 5.466 18 Si 0.694 3.306 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.188 4.188 23 C -0.153 4.153 24 C -0.167 4.167 25 C -0.126 4.126 26 C -0.142 4.142 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.696 1.641 -1.904 12.943 hybrid contribution -0.305 -0.592 0.808 1.047 sum -13.001 1.049 -1.095 13.089 Atomic orbital electron populations 1.21788 0.92906 1.02700 1.03370 1.22967 0.95116 0.80960 1.02518 1.86520 1.25248 1.31717 1.84453 1.24024 0.79990 0.93399 0.71896 1.90670 1.60107 1.43103 1.44664 1.21855 0.98790 0.88636 1.01248 0.88082 1.22205 0.98520 0.98347 0.95251 1.23517 0.96452 0.98759 1.01061 1.22106 0.86811 0.95108 0.96107 0.88632 1.60691 1.17377 1.18041 1.29943 1.19119 0.88159 0.93283 0.83531 1.20802 1.36475 0.98666 1.00437 0.93226 1.24866 0.95265 0.97011 0.94723 1.70125 1.39137 1.32685 1.04684 0.87025 0.78503 0.85452 0.79606 1.20878 1.21406 1.20169 1.23331 0.97298 0.97976 1.00165 1.22329 0.97453 0.97941 0.97627 1.22447 0.97931 0.98862 0.97454 1.22044 1.00327 0.93143 0.97054 1.22239 0.87832 1.03729 1.00379 0.91620 0.90502 0.91535 0.91470 0.91365 0.91463 0.91667 0.92051 0.91527 0.88502 0.93754 0.94002 0.93034 0.92015 0.94128 0.93553 0.93593 0.91896 0.93361 0.89649 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -5.13 10.19 -39.25 -0.40 -5.53 16 4 C 0.46 7.71 7.11 36.01 0.26 7.96 16 5 O -0.50 -10.02 14.96 -18.75 -0.28 -10.30 16 6 C -0.09 -1.31 3.41 -90.65 -0.31 -1.62 16 7 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 8 C -0.10 -1.49 6.33 -25.07 -0.16 -1.65 16 9 C -0.16 -2.51 5.04 -24.74 -0.12 -2.64 16 10 C 0.11 2.19 2.71 -66.06 -0.18 2.01 16 11 H 0.10 2.26 6.44 -51.93 -0.33 1.92 16 12 N -0.63 -13.71 4.87 -91.36 -0.44 -14.16 16 13 C 0.25 5.59 0.42 -131.63 -0.05 5.54 16 14 C -0.53 -13.63 6.11 -34.44 -0.21 -13.84 16 15 H 0.05 1.33 7.54 -52.48 -0.40 0.93 16 16 C 0.09 2.38 4.97 -17.82 -0.09 2.29 16 17 N -0.83 -22.98 12.06 55.43 0.67 -22.31 16 18 Si 0.87 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.15 -2.92 4.33 -25.08 -0.11 -3.03 16 23 C -0.12 -2.11 6.91 -24.74 -0.17 -2.28 16 24 C -0.13 -2.40 6.83 -25.07 -0.17 -2.57 16 25 C -0.09 -1.94 5.53 -25.62 -0.14 -2.08 16 26 C -0.10 -1.97 6.14 -25.61 -0.16 -2.13 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.06 0.91 7.78 -51.93 -0.40 0.50 16 35 H 0.07 1.07 6.81 -51.93 -0.35 0.72 16 36 H 0.30 5.96 8.11 -39.29 -0.32 5.64 16 37 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 38 H 0.04 0.76 6.49 -51.93 -0.34 0.42 16 39 H 0.05 1.05 7.63 -51.93 -0.40 0.66 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.57 7.39 -51.93 -0.38 1.19 16 45 H 0.05 1.11 7.92 -51.93 -0.41 0.69 16 46 H 0.08 1.92 6.40 -51.92 -0.33 1.59 16 47 H 0.07 1.39 8.04 -51.93 -0.42 0.98 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -28.66 361.48 -9.31 -37.98 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.28 Total: 6.55 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.01 Total: -13.97 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.22 Total: -36.47 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.68 Total: -15.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.66 -9.31 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.265 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds