Wall clock time and date at job start Tue Mar 31 2020 08:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45193 * 109.47006 * 2 1 4 4 C 1.34227 * 117.00070 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.50707 * 120.00070 * 180.02562 * 4 3 2 7 7 H 1.08995 * 110.01557 * 300.06376 * 6 4 3 8 8 C 1.54266 * 110.03163 * 61.45599 * 6 4 3 9 9 C 1.54897 * 104.19300 * 142.89198 * 8 6 4 10 10 C 1.54880 * 102.75097 * 322.05824 * 9 8 6 11 11 H 1.09004 * 110.48644 * 279.13455 * 10 9 8 12 12 N 1.46898 * 110.48853 * 156.61842 * 10 9 8 13 13 C 1.46901 * 110.99785 * 92.68362 * 12 10 9 14 14 C 1.50700 * 110.01573 * 57.03582 * 13 12 10 15 15 H 1.08004 * 119.99772 * 238.51107 * 14 13 12 16 16 C 1.37880 * 120.00113 * 58.51208 * 14 13 12 17 17 N 1.31509 * 119.99712 * 352.41024 * 16 14 13 18 18 Si 1.86802 * 119.99914 * 172.41254 * 16 14 13 19 19 H 1.48498 * 109.46917 * 89.99675 * 18 16 14 20 20 H 1.48500 * 109.47094 * 209.99741 * 18 16 14 21 21 H 1.48504 * 109.47021 * 329.99899 * 18 16 14 22 22 C 1.54263 * 110.03396 * 295.59043 * 13 12 10 23 23 C 1.54885 * 104.19847 * 217.10350 * 22 13 12 24 24 C 1.54895 * 102.74554 * 37.94389 * 23 22 13 25 25 C 1.53879 * 110.03255 * 178.42630 * 13 12 10 26 26 C 1.53877 * 110.03109 * 178.62411 * 6 4 3 27 27 H 1.09000 * 109.47306 * 60.00088 * 1 2 3 28 28 H 1.09007 * 109.47528 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47423 * 299.99722 * 1 2 3 30 30 H 1.09000 * 109.46522 * 240.00321 * 2 1 3 31 31 H 1.09003 * 109.46982 * 120.00321 * 2 1 3 32 32 H 1.08993 * 110.48619 * 261.56999 * 8 6 4 33 33 H 1.09004 * 110.48752 * 24.08547 * 8 6 4 34 34 H 1.09004 * 110.74835 * 80.37486 * 9 8 6 35 35 H 1.08998 * 110.75140 * 203.55656 * 9 8 6 36 36 H 1.00896 * 111.00003 * 328.73316 * 12 10 9 37 37 H 0.97005 * 119.99802 * 185.02174 * 17 16 14 38 38 H 1.08997 * 110.48385 * 335.78746 * 22 13 12 39 39 H 1.09002 * 110.48127 * 98.42677 * 22 13 12 40 40 H 1.08995 * 110.76098 * 279.63135 * 23 22 13 41 41 H 1.09004 * 110.75379 * 156.25257 * 23 22 13 42 42 H 1.09002 * 110.48396 * 203.37135 * 24 23 22 43 43 H 1.09007 * 110.59570 * 80.78861 * 24 23 22 44 44 H 1.08998 * 110.03050 * 238.56999 * 25 13 12 45 45 H 1.08997 * 110.03001 * 359.94895 * 25 13 12 46 46 H 1.09009 * 110.03088 * 359.97438 * 26 6 4 47 47 H 1.08994 * 110.03632 * 121.43026 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5894 3.4786 -0.8852 8 6 3.4822 3.6901 1.2744 9 6 4.7208 4.5360 1.6611 10 6 5.8995 3.5874 1.3299 11 1 6.0475 2.8674 2.1348 12 7 7.1291 4.3568 1.0975 13 6 7.9073 4.4924 2.3360 14 6 8.2270 3.1303 2.8960 15 1 7.9033 2.8663 3.8920 16 6 8.9328 2.2211 2.1368 17 7 9.1974 2.4827 0.8755 18 14 9.5130 0.6178 2.9000 19 1 8.4672 -0.4215 2.7231 20 1 10.7657 0.1778 2.2349 21 1 9.7672 0.8227 4.3487 22 6 7.1145 5.3175 3.3706 23 6 8.1941 6.1650 4.0883 24 6 9.1598 6.5358 2.9354 25 6 9.2077 5.2671 2.0593 26 6 5.4576 2.8721 0.0364 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.6305 4.3360 1.0614 33 1 3.2361 2.9852 2.0686 34 1 4.7731 5.4424 1.0578 35 1 4.7050 4.7809 2.7231 36 1 6.9204 5.2608 0.7008 37 1 9.6295 1.8135 0.3217 38 1 6.3923 5.9632 2.8711 39 1 6.6126 4.6592 4.0798 40 1 8.7074 5.5746 4.8473 41 1 7.7538 7.0608 4.5265 42 1 10.1505 6.7668 3.3270 43 1 8.7700 7.3789 2.3649 44 1 10.0700 4.6581 2.3309 45 1 9.2618 5.5416 1.0059 46 1 5.7869 1.8331 0.0535 47 1 5.8731 3.3820 -0.8327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257045813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:06 Heat of formation + Delta-G solvation = -116.745356 kcal Electronic energy + Delta-G solvation = -25427.885232 eV Core-core repulsion = 21995.043856 eV Total energy + Delta-G solvation = -3432.841376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75028 -39.95281 -38.30518 -37.40290 -34.47135 -33.46956 -32.52355 -29.92561 -29.29387 -29.09052 -27.34936 -25.43352 -24.44842 -22.97903 -21.49164 -21.18359 -20.51079 -20.21207 -18.88042 -18.02444 -17.63247 -17.53203 -16.67369 -16.27443 -16.18367 -15.65791 -15.13378 -14.94432 -14.46232 -14.28435 -13.96754 -13.82427 -13.69956 -13.59013 -13.09027 -12.98390 -12.90287 -12.80167 -12.70056 -12.48424 -12.33890 -12.23463 -12.05770 -11.79736 -11.72826 -11.58085 -11.54704 -11.44343 -11.30996 -11.17183 -11.07805 -10.96621 -10.61510 -10.32528 -8.33761 -7.80655 -5.97477 1.16708 1.35258 1.40411 1.44642 1.67773 2.49403 3.32308 3.52595 3.72884 3.85247 3.97410 3.97994 4.08276 4.22557 4.26424 4.29773 4.33893 4.50601 4.53953 4.61242 4.77642 4.80633 4.86331 4.88399 4.91559 4.94893 5.03672 5.08530 5.09529 5.15123 5.19688 5.21300 5.27553 5.31086 5.36203 5.39341 5.43813 5.56784 5.65441 5.72455 5.78510 5.86304 6.07361 6.43588 6.74422 6.89256 7.18921 7.57971 7.68741 9.14353 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.004891 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.739409 B = 5723.733411 C = 6827.657644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.354 6.354 4 C 0.466 3.534 5 O -0.545 6.545 6 C -0.078 4.078 7 H 0.137 0.863 8 C -0.095 4.095 9 C -0.145 4.145 10 C 0.110 3.890 11 H 0.049 0.951 12 N -0.651 5.651 13 C 0.241 3.759 14 C -0.526 4.526 15 H 0.033 0.967 16 C 0.051 3.949 17 N -0.852 5.852 18 Si 0.906 3.094 19 H -0.294 1.294 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.140 4.140 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.084 4.084 26 C -0.099 4.099 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.311 0.689 37 H 0.246 0.754 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.024 0.976 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.954 4.883 -1.342 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.270 6.270 4 C 0.311 3.689 5 O -0.435 6.435 6 C -0.098 4.098 7 H 0.154 0.846 8 C -0.133 4.133 9 C -0.184 4.184 10 C -0.001 4.001 11 H 0.067 0.933 12 N -0.279 5.279 13 C 0.152 3.848 14 C -0.565 4.565 15 H 0.051 0.949 16 C -0.153 4.153 17 N -0.488 5.488 18 Si 0.734 3.266 19 H -0.221 1.221 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.179 4.179 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.123 4.123 26 C -0.137 4.137 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.217 3.966 -1.743 15.821 hybrid contribution 0.445 -1.389 0.774 1.652 sum -14.771 2.577 -0.968 15.025 Atomic orbital electron populations 1.21801 0.89695 1.04371 1.03972 1.23297 0.97563 0.79654 1.02053 1.86511 1.23572 1.33253 1.83697 1.24272 0.80559 0.93369 0.70692 1.90665 1.61291 1.44591 1.46914 1.21824 0.95774 0.88557 1.03616 0.84564 1.22194 0.98946 0.98168 0.94009 1.23338 0.94865 0.98651 1.01522 1.21920 0.88117 0.95111 0.94942 0.93307 1.60479 1.18507 1.18900 1.29969 1.19088 0.89082 0.91929 0.84711 1.21076 1.35338 1.00473 0.99607 0.94882 1.25303 0.95933 0.98960 0.95139 1.70213 1.40389 1.32925 1.05248 0.86399 0.77718 0.83166 0.79293 1.22072 1.21247 1.19655 1.23185 0.97733 0.97838 0.99184 1.22318 0.96749 0.98788 0.97104 1.22375 0.98986 0.97412 0.96926 1.21908 0.98655 0.94582 0.97119 1.22050 0.91040 1.00712 0.99914 0.90797 0.88317 0.91075 0.91715 0.92275 0.87498 0.92591 0.89782 0.91469 0.87173 0.94495 0.91709 0.94443 0.93414 0.90709 0.92443 0.91127 0.95696 0.94554 0.94160 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 10.29 71.98 0.74 -1.24 16 2 C 0.05 1.08 6.19 71.98 0.45 1.52 16 3 O -0.35 -9.51 10.19 -51.38 -0.52 -10.04 16 4 C 0.47 15.35 7.11 71.24 0.51 15.86 16 5 O -0.54 -22.78 14.96 21.96 0.33 -22.45 16 6 C -0.08 -2.28 3.41 -10.81 -0.04 -2.32 16 7 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 8 C -0.10 -2.41 6.33 31.67 0.20 -2.21 16 9 C -0.14 -4.22 5.04 31.88 0.16 -4.06 16 10 C 0.11 4.43 2.71 45.99 0.12 4.55 16 11 H 0.05 2.41 6.44 -2.39 -0.02 2.40 16 12 N -0.65 -28.25 4.87 -442.97 -2.16 -30.41 16 13 C 0.24 10.95 0.42 3.51 0.00 10.95 16 14 C -0.53 -28.27 6.11 25.60 0.16 -28.12 16 15 H 0.03 1.84 7.54 -2.91 -0.02 1.82 16 16 C 0.05 2.86 4.97 84.66 0.42 3.28 16 17 N -0.85 -49.07 12.06 21.45 0.26 -48.81 16 18 Si 0.91 45.57 29.55 68.60 2.03 47.59 16 19 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 22 C -0.14 -5.29 4.33 31.67 0.14 -5.15 16 23 C -0.11 -3.80 6.91 31.89 0.22 -3.58 16 24 C -0.12 -4.15 6.83 31.67 0.22 -3.93 16 25 C -0.08 -3.75 5.53 31.32 0.17 -3.58 16 26 C -0.10 -3.83 6.14 31.32 0.19 -3.64 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.53 7.85 -2.38 -0.02 1.51 16 34 H 0.08 2.13 7.78 -2.38 -0.02 2.11 16 35 H 0.07 1.98 6.81 -2.39 -0.02 1.96 16 36 H 0.31 11.99 8.11 -89.70 -0.73 11.26 16 37 H 0.25 14.03 8.32 -92.70 -0.77 13.26 16 38 H 0.06 2.14 6.49 -2.39 -0.02 2.13 16 39 H 0.04 1.50 7.63 -2.39 -0.02 1.48 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.02 1.26 7.39 -2.39 -0.02 1.24 16 45 H 0.04 1.67 7.92 -2.39 -0.02 1.65 16 46 H 0.04 1.92 6.40 -2.38 -0.02 1.90 16 47 H 0.07 2.74 8.04 -2.39 -0.02 2.72 16 Total: -1.00 -66.37 361.48 3.81 -62.57 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.21 Total: 23.21 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 3.66 Total: -21.66 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.90 Total: -79.22 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.20 Total: -32.49 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -66.37 3.81 -62.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257045813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.178 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds