Wall clock time and date at job start Tue Mar 31 2020 08:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47565 * 2 1 4 4 C 1.34221 * 117.00200 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99762 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00211 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.01629 * 301.39469 * 6 4 3 8 8 C 1.54273 * 110.06999 * 62.81118 * 6 4 3 9 9 C 1.54889 * 104.19372 * 142.91750 * 8 6 4 10 10 C 1.54883 * 102.74995 * 322.05558 * 9 8 6 11 11 H 1.08992 * 110.60064 * 279.21039 * 10 9 8 12 12 N 1.46910 * 110.48602 * 156.62058 * 10 9 8 13 13 C 1.46842 * 110.99724 * 181.87066 * 12 10 9 14 14 C 1.53041 * 109.52110 * 174.16056 * 13 12 10 15 15 C 1.53120 * 109.30953 * 59.16197 * 14 13 12 16 16 C 1.50700 * 109.52500 * 182.46199 * 15 14 13 17 17 H 1.08004 * 119.99616 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00494 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47672 * 89.99260 * 20 18 16 22 22 H 1.48499 * 109.47336 * 209.99788 * 20 18 16 23 23 H 1.48504 * 109.46836 * 329.99161 * 20 18 16 24 24 C 1.53122 * 109.15776 * 302.40567 * 15 14 13 25 25 C 1.46846 * 110.99741 * 57.66288 * 12 10 9 26 26 C 1.53872 * 110.03579 * 179.97438 * 6 4 3 27 27 H 1.09004 * 109.47313 * 300.00352 * 1 2 3 28 28 H 1.08999 * 109.46986 * 60.00007 * 1 2 3 29 29 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46998 * 239.99903 * 2 1 3 31 31 H 1.08999 * 109.46986 * 119.99993 * 2 1 3 32 32 H 1.09002 * 110.48520 * 261.59166 * 8 6 4 33 33 H 1.09000 * 110.48752 * 24.10703 * 8 6 4 34 34 H 1.08998 * 110.75339 * 203.74117 * 9 8 6 35 35 H 1.09001 * 110.75555 * 80.37621 * 9 8 6 36 36 H 1.09002 * 109.46431 * 54.14633 * 13 12 10 37 37 H 1.09007 * 109.45843 * 294.17012 * 13 12 10 38 38 H 1.09001 * 109.50309 * 179.11690 * 14 13 12 39 39 H 1.08992 * 109.50431 * 299.20104 * 14 13 12 40 40 H 1.08999 * 109.52265 * 62.26943 * 15 14 13 41 41 H 0.96990 * 120.00309 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46821 * 297.65587 * 24 15 14 43 43 H 1.08997 * 109.53845 * 177.57919 * 24 15 14 44 44 H 1.09001 * 109.46071 * 305.85198 * 25 12 10 45 45 H 1.08996 * 109.46274 * 65.83068 * 25 12 10 46 46 H 1.08996 * 110.03219 * 121.38219 * 26 6 4 47 47 H 1.08997 * 110.07283 * 359.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.5709 3.4854 -0.8747 8 6 3.5108 3.6803 1.2883 9 6 4.7578 4.5233 1.6537 10 6 5.9287 3.5772 1.2895 11 1 6.0952 2.8496 2.0837 12 7 7.1530 4.3485 1.0356 13 6 8.2598 3.4656 0.6459 14 6 9.4728 4.3106 0.2498 15 6 9.8876 5.1875 1.4345 16 6 11.0440 6.0655 1.0306 17 1 11.4441 6.0046 0.0293 18 6 11.5916 6.9455 1.9397 19 7 11.1047 7.0193 3.1591 20 14 13.0245 8.0344 1.4389 21 1 12.5063 9.3127 0.8887 22 1 13.8723 8.3138 2.6256 23 1 13.8341 7.3422 0.4041 24 6 8.7019 6.0616 1.8522 25 6 7.5112 5.1659 2.2017 26 6 5.4582 2.8717 0.0014 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.6547 4.3279 1.0991 33 1 3.2823 2.9695 2.0824 34 1 4.7672 4.7575 2.7182 35 1 4.7969 5.4342 1.0564 36 1 7.9533 2.8510 -0.2006 37 1 8.5239 2.8222 1.4852 38 1 10.2991 3.6548 -0.0245 39 1 9.2137 4.9439 -0.5986 40 1 10.1846 4.5539 2.2702 41 1 11.4897 7.6387 3.7985 42 1 8.4304 6.7230 1.0293 43 1 8.9769 6.6574 2.7224 44 1 6.6610 5.7863 2.4853 45 1 7.7789 4.5144 3.0335 46 1 5.8547 3.3879 -0.8728 47 1 5.7884 1.8330 0.0030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257060994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:05 Heat of formation + Delta-G solvation = -107.235648 kcal Electronic energy + Delta-G solvation = -24442.948531 eV Core-core repulsion = 21010.519527 eV Total energy + Delta-G solvation = -3432.429004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88787 -38.96788 -37.12771 -36.29044 -33.46783 -32.07780 -31.12144 -30.07431 -28.82064 -27.73345 -25.22969 -23.88228 -22.55957 -21.95570 -21.59206 -20.16574 -19.37179 -18.60280 -17.97551 -16.82702 -16.67880 -16.43630 -15.82770 -14.89816 -14.52615 -14.30287 -14.02636 -13.79215 -13.52327 -13.30061 -13.07306 -12.86099 -12.47487 -12.42595 -12.28590 -12.01504 -11.89085 -11.77580 -11.46152 -11.14909 -10.94598 -10.84881 -10.81754 -10.78817 -10.69705 -10.64982 -10.39191 -10.29337 -10.13851 -9.89778 -9.37127 -8.88728 -8.65030 -8.25191 -7.70327 -5.93394 -3.98443 2.05228 2.44656 3.33833 3.40374 3.43855 4.24009 4.42452 4.47965 4.51022 4.56207 4.59327 4.65985 4.92103 5.10142 5.25118 5.36268 5.38476 5.40579 5.41098 5.46908 5.53895 5.60700 5.63290 5.77497 5.87257 5.93863 6.00226 6.13544 6.15373 6.19820 6.24894 6.32940 6.39386 6.41850 6.66433 6.69861 6.91811 7.14130 7.22425 7.49944 7.59176 7.67823 7.77143 7.88874 8.10252 8.20869 8.53059 9.05351 9.65684 11.12788 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.047974 B = 0.002710 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.514071 B =10328.803130 C =10647.013446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.467 3.533 5 O -0.506 6.506 6 C -0.082 4.082 7 H 0.111 0.889 8 C -0.108 4.108 9 C -0.115 4.115 10 C 0.078 3.922 11 H 0.041 0.959 12 N -0.527 5.527 13 C 0.058 3.942 14 C -0.106 4.106 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.104 4.104 25 C 0.057 3.943 26 C -0.114 4.114 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.022 0.978 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.087 0.913 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 -9.940 -4.429 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.310 3.690 5 O -0.394 6.394 6 C -0.102 4.102 7 H 0.129 0.871 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.031 4.031 11 H 0.059 0.941 12 N -0.252 5.252 13 C -0.069 4.069 14 C -0.144 4.144 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.142 4.142 25 C -0.071 4.071 26 C -0.151 4.151 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.106 0.894 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.664 -9.856 -4.646 23.361 hybrid contribution 0.946 -0.201 0.483 1.081 sum -19.718 -10.056 -4.164 22.523 Atomic orbital electron populations 1.21802 0.92619 1.02931 1.03556 1.23022 0.95377 0.80468 1.02580 1.86521 1.24741 1.32151 1.84062 1.23876 0.80314 0.93058 0.71729 1.90646 1.60285 1.43145 1.45276 1.21720 0.97185 0.89210 1.02077 0.87060 1.22282 0.98952 0.98517 0.94853 1.22582 0.92439 0.98717 1.01566 1.22420 0.91174 0.94068 0.95411 0.94149 1.62145 1.02824 1.23222 1.36976 1.22133 0.91994 0.94349 0.98444 1.21673 0.94019 0.97938 1.00737 1.18685 0.92987 0.93122 0.92334 1.21216 1.14992 1.20632 0.97828 0.92787 1.24970 0.96965 0.97179 0.94970 1.69877 1.41619 1.37460 1.04239 0.86640 0.82655 0.81006 0.77947 1.20752 1.21381 1.20027 1.21654 0.92338 0.97820 1.02364 1.22282 0.99203 0.95725 0.89854 1.22293 0.90589 1.02560 0.99681 0.91438 0.91459 0.90297 0.91295 0.91294 0.90217 0.91445 0.91215 0.89692 0.92274 0.95958 0.93305 0.92515 0.96249 0.93158 0.93852 0.89050 0.92378 0.96158 0.89404 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.77 10.20 -39.24 -0.40 -4.17 16 4 C 0.47 5.64 7.10 36.01 0.26 5.89 16 5 O -0.51 -7.53 14.96 -18.75 -0.28 -7.81 16 6 C -0.08 -0.89 3.41 -90.65 -0.31 -1.20 16 7 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 8 C -0.11 -1.07 6.34 -25.07 -0.16 -1.23 16 9 C -0.12 -1.39 5.10 -24.74 -0.13 -1.51 16 10 C 0.08 1.14 2.58 -66.08 -0.17 0.97 16 11 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 12 N -0.53 -9.30 4.48 -224.74 -1.01 -10.30 16 13 C 0.06 1.08 5.32 -3.83 -0.02 1.06 16 14 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 15 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 16 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 19 N -0.89 -25.59 11.38 55.43 0.63 -24.96 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 25 C 0.06 1.10 5.27 -3.84 -0.02 1.08 16 26 C -0.11 -1.48 4.83 -25.64 -0.12 -1.61 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 34 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.98 6.97 -51.93 -0.36 0.62 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 44 H 0.06 1.02 6.66 -51.93 -0.35 0.68 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 1.17 7.89 -51.93 -0.41 0.76 16 47 H 0.08 1.22 6.40 -51.93 -0.33 0.89 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -30.05 362.71 -10.01 -40.05 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.47 Total: -1.63 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.93 Total: -13.10 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.38 Total: -35.26 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.68 Total: -11.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.05 -10.01 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.181 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds