Wall clock time and date at job start Tue Mar 31 2020 08:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47565 * 2 1 4 4 C 1.34221 * 117.00200 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99762 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00211 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.01629 * 301.39469 * 6 4 3 8 8 C 1.54273 * 110.06999 * 62.81118 * 6 4 3 9 9 C 1.54889 * 104.19372 * 142.91750 * 8 6 4 10 10 C 1.54883 * 102.74995 * 322.05558 * 9 8 6 11 11 H 1.08992 * 110.60064 * 279.21039 * 10 9 8 12 12 N 1.46910 * 110.48602 * 156.62058 * 10 9 8 13 13 C 1.46842 * 110.99724 * 181.87066 * 12 10 9 14 14 C 1.53041 * 109.52110 * 174.16056 * 13 12 10 15 15 C 1.53120 * 109.30953 * 59.16197 * 14 13 12 16 16 C 1.50700 * 109.52500 * 182.46199 * 15 14 13 17 17 H 1.08004 * 119.99616 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00494 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47672 * 89.99260 * 20 18 16 22 22 H 1.48499 * 109.47336 * 209.99788 * 20 18 16 23 23 H 1.48504 * 109.46836 * 329.99161 * 20 18 16 24 24 C 1.53122 * 109.15776 * 302.40567 * 15 14 13 25 25 C 1.46846 * 110.99741 * 57.66288 * 12 10 9 26 26 C 1.53872 * 110.03579 * 179.97438 * 6 4 3 27 27 H 1.09004 * 109.47313 * 300.00352 * 1 2 3 28 28 H 1.08999 * 109.46986 * 60.00007 * 1 2 3 29 29 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46998 * 239.99903 * 2 1 3 31 31 H 1.08999 * 109.46986 * 119.99993 * 2 1 3 32 32 H 1.09002 * 110.48520 * 261.59166 * 8 6 4 33 33 H 1.09000 * 110.48752 * 24.10703 * 8 6 4 34 34 H 1.08998 * 110.75339 * 203.74117 * 9 8 6 35 35 H 1.09001 * 110.75555 * 80.37621 * 9 8 6 36 36 H 1.09002 * 109.46431 * 54.14633 * 13 12 10 37 37 H 1.09007 * 109.45843 * 294.17012 * 13 12 10 38 38 H 1.09001 * 109.50309 * 179.11690 * 14 13 12 39 39 H 1.08992 * 109.50431 * 299.20104 * 14 13 12 40 40 H 1.08999 * 109.52265 * 62.26943 * 15 14 13 41 41 H 0.96990 * 120.00309 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46821 * 297.65587 * 24 15 14 43 43 H 1.08997 * 109.53845 * 177.57919 * 24 15 14 44 44 H 1.09001 * 109.46071 * 305.85198 * 25 12 10 45 45 H 1.08996 * 109.46274 * 65.83068 * 25 12 10 46 46 H 1.08996 * 110.03219 * 121.38219 * 26 6 4 47 47 H 1.08997 * 110.07283 * 359.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.5709 3.4854 -0.8747 8 6 3.5108 3.6803 1.2883 9 6 4.7578 4.5233 1.6537 10 6 5.9287 3.5772 1.2895 11 1 6.0952 2.8496 2.0837 12 7 7.1530 4.3485 1.0356 13 6 8.2598 3.4656 0.6459 14 6 9.4728 4.3106 0.2498 15 6 9.8876 5.1875 1.4345 16 6 11.0440 6.0655 1.0306 17 1 11.4441 6.0046 0.0293 18 6 11.5916 6.9455 1.9397 19 7 11.1047 7.0193 3.1591 20 14 13.0245 8.0344 1.4389 21 1 12.5063 9.3127 0.8887 22 1 13.8723 8.3138 2.6256 23 1 13.8341 7.3422 0.4041 24 6 8.7019 6.0616 1.8522 25 6 7.5112 5.1659 2.2017 26 6 5.4582 2.8717 0.0014 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.6547 4.3279 1.0991 33 1 3.2823 2.9695 2.0824 34 1 4.7672 4.7575 2.7182 35 1 4.7969 5.4342 1.0564 36 1 7.9533 2.8510 -0.2006 37 1 8.5239 2.8222 1.4852 38 1 10.2991 3.6548 -0.0245 39 1 9.2137 4.9439 -0.5986 40 1 10.1846 4.5539 2.2702 41 1 11.4897 7.6387 3.7985 42 1 8.4304 6.7230 1.0293 43 1 8.9769 6.6574 2.7224 44 1 6.6610 5.7863 2.4853 45 1 7.7789 4.5144 3.0335 46 1 5.8547 3.3879 -0.8728 47 1 5.7884 1.8330 0.0030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257060994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:04 Heat of formation + Delta-G solvation = -123.386709 kcal Electronic energy + Delta-G solvation = -24443.648894 eV Core-core repulsion = 21010.519527 eV Total energy + Delta-G solvation = -3433.129367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81405 -40.27430 -38.28581 -37.41574 -35.25547 -33.09868 -32.49623 -31.66910 -29.91205 -29.06675 -27.00665 -24.77378 -23.78758 -23.59874 -22.75985 -21.23869 -20.46972 -20.35808 -18.89982 -18.45225 -17.67836 -17.53956 -17.24996 -16.49360 -15.84744 -15.56739 -15.15329 -14.91434 -14.76414 -14.60626 -14.39462 -14.12281 -14.05580 -13.75324 -13.39753 -13.15015 -12.93268 -12.81024 -12.66839 -12.51167 -12.45869 -12.34579 -12.22852 -12.01916 -11.92137 -11.82143 -11.70264 -11.61134 -11.52966 -11.32888 -11.27047 -10.76575 -10.61320 -10.35351 -9.19139 -8.06712 -6.20078 1.13978 1.41885 1.42240 1.52514 1.65770 2.44692 2.98310 3.19921 3.47116 3.50439 3.74723 4.00186 4.08517 4.16252 4.22818 4.30231 4.33529 4.38163 4.39529 4.44614 4.48680 4.59243 4.62584 4.69917 4.77081 4.85538 4.93230 4.93542 4.97455 4.98700 5.06374 5.09897 5.15597 5.17961 5.23282 5.26460 5.37531 5.38066 5.47943 5.58620 5.65276 6.02317 6.04796 6.32628 6.37985 6.42536 6.70754 6.91343 7.47474 8.97913 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.047974 B = 0.002710 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.514071 B =10328.803130 C =10647.013446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.470 3.530 5 O -0.541 6.541 6 C -0.078 4.078 7 H 0.138 0.862 8 C -0.097 4.097 9 C -0.112 4.112 10 C 0.073 3.927 11 H 0.028 0.972 12 N -0.526 5.526 13 C 0.065 3.935 14 C -0.098 4.098 15 C 0.043 3.957 16 C -0.532 4.532 17 H 0.051 0.949 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.954 3.046 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.094 4.094 25 C 0.069 3.931 26 C -0.108 4.108 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.012 0.988 38 H 0.049 0.951 39 H 0.055 0.945 40 H -0.017 1.017 41 H 0.260 0.740 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.006 0.994 46 H 0.088 0.912 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.886 -9.702 -5.452 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.314 3.686 5 O -0.431 6.431 6 C -0.097 4.097 7 H 0.155 0.845 8 C -0.135 4.135 9 C -0.149 4.149 10 C -0.035 4.035 11 H 0.046 0.954 12 N -0.251 5.251 13 C -0.063 4.063 14 C -0.136 4.136 15 C 0.024 3.976 16 C -0.570 4.570 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.780 3.220 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.132 4.132 25 C -0.059 4.059 26 C -0.146 4.146 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.001 0.999 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.025 0.975 46 H 0.107 0.893 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.763 -9.621 -5.677 25.357 hybrid contribution 1.579 -0.331 0.812 1.806 sum -21.184 -9.953 -4.865 23.906 Atomic orbital electron populations 1.21816 0.90254 1.04314 1.03848 1.23287 0.97216 0.79441 1.02336 1.86518 1.23745 1.33427 1.83513 1.24097 0.80619 0.93095 0.70741 1.90640 1.61122 1.44313 1.47041 1.21730 0.95304 0.88920 1.03739 0.84455 1.22248 0.98729 0.98358 0.94179 1.22567 0.92091 0.98446 1.01822 1.22551 0.90453 0.94389 0.96106 0.95354 1.62122 1.03515 1.23570 1.35847 1.22035 0.91361 0.93930 0.98957 1.21535 0.95446 0.97670 0.98947 1.18670 0.93224 0.93139 0.92540 1.21572 1.16160 1.21410 0.97841 0.93118 1.25751 0.99514 0.98495 0.94971 1.70017 1.42694 1.37984 1.05069 0.85622 0.79482 0.79246 0.77688 1.19978 1.20996 1.19485 1.21410 0.93500 0.97789 1.00523 1.22053 0.98304 0.95450 0.90062 1.22181 0.92554 1.01233 0.98637 0.91182 0.91063 0.88397 0.91482 0.91735 0.87449 0.91519 0.90944 0.89494 0.89834 0.97022 0.93241 0.92603 0.99887 0.93102 0.94688 0.92077 0.89965 0.97545 0.89346 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 71.98 0.74 -0.54 16 2 C 0.05 0.77 6.19 71.98 0.45 1.22 16 3 O -0.36 -6.74 10.20 -51.33 -0.52 -7.27 16 4 C 0.47 10.53 7.10 71.24 0.51 11.04 16 5 O -0.54 -15.77 14.96 21.96 0.33 -15.44 16 6 C -0.08 -1.47 3.41 -10.81 -0.04 -1.50 16 7 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 8 C -0.10 -1.62 6.34 31.67 0.20 -1.42 16 9 C -0.11 -2.41 5.10 31.88 0.16 -2.24 16 10 C 0.07 2.04 2.58 45.97 0.12 2.16 16 11 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 12 N -0.53 -18.17 4.48 -864.95 -3.88 -22.04 16 13 C 0.07 2.40 5.32 86.33 0.46 2.85 16 14 C -0.10 -4.24 5.32 30.65 0.16 -4.08 16 15 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 16 C -0.53 -30.16 8.56 25.60 0.22 -29.94 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.62 5.31 84.65 0.45 1.07 16 19 N -0.92 -53.92 11.38 21.44 0.24 -53.67 16 20 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.09 -4.54 5.12 30.65 0.16 -4.39 16 25 C 0.07 2.69 5.27 86.33 0.45 3.15 16 26 C -0.11 -2.65 4.83 31.30 0.15 -2.50 16 27 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.15 7.85 -2.39 -0.02 1.13 16 34 H 0.07 1.54 7.82 -2.39 -0.02 1.52 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.69 6.97 -2.39 -0.02 2.67 16 37 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 41 H 0.26 14.50 8.31 -92.72 -0.77 13.73 16 42 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 3.32 6.18 -2.39 -0.01 3.31 16 44 H 0.08 2.81 6.66 -2.39 -0.02 2.79 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 47 H 0.07 1.93 6.40 -2.39 -0.02 1.92 16 Total: -1.00 -66.33 362.71 3.28 -63.04 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.92 Total: 11.85 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.17 Total: -22.93 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -3.63 Total: -75.72 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.20 Total: -22.71 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.33 3.28 -63.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.343 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds