Wall clock time and date at job start Tue Mar 31 2020 08:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47007 * 2 1 4 4 C 1.34231 * 116.99630 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00545 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99638 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.67184 * 61.78462 * 6 4 3 8 8 C 1.54887 * 110.75717 * 298.54686 * 6 4 3 9 9 C 1.54266 * 104.19890 * 203.55768 * 8 6 4 10 10 C 1.53886 * 106.59746 * 23.60988 * 9 8 6 11 11 H 1.09001 * 110.03029 * 240.66995 * 10 9 8 12 12 N 1.46894 * 110.03139 * 119.28145 * 10 9 8 13 13 C 1.46847 * 110.99976 * 61.45821 * 12 10 9 14 14 C 1.53033 * 109.52573 * 185.83829 * 13 12 10 15 15 C 1.53119 * 109.27673 * 300.81824 * 14 13 12 16 16 C 1.50702 * 109.52248 * 177.55790 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.13319 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.84877 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.53118 * 109.21117 * 57.62443 * 15 14 13 25 25 C 1.46841 * 110.99985 * 185.66320 * 12 10 9 26 26 C 1.54269 * 106.59411 * 0.02562 * 10 9 8 27 27 H 1.08997 * 109.46931 * 60.00629 * 1 2 3 28 28 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46788 * 299.99917 * 1 2 3 30 30 H 1.09004 * 109.47157 * 239.99998 * 2 1 3 31 31 H 1.09001 * 109.47135 * 120.00097 * 2 1 3 32 32 H 1.08997 * 110.48863 * 84.88537 * 8 6 4 33 33 H 1.09000 * 110.49047 * 322.23752 * 8 6 4 34 34 H 1.08998 * 110.03501 * 264.32926 * 9 8 6 35 35 H 1.08993 * 110.03509 * 142.89118 * 9 8 6 36 36 H 1.09003 * 109.46420 * 65.81624 * 13 12 10 37 37 H 1.09003 * 109.45463 * 305.84763 * 13 12 10 38 38 H 1.09001 * 109.50499 * 180.88280 * 14 13 12 39 39 H 1.08997 * 109.50936 * 60.76070 * 14 13 12 40 40 H 1.09001 * 109.52390 * 297.68231 * 15 14 13 41 41 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.50535 * 62.31797 * 24 15 14 43 43 H 1.09002 * 109.50417 * 182.43491 * 24 15 14 44 44 H 1.08996 * 109.46834 * 294.18208 * 25 12 10 45 45 H 1.09004 * 109.46087 * 54.15854 * 25 12 10 46 46 H 1.09003 * 110.48586 * 95.06856 * 26 10 9 47 47 H 1.08999 * 110.48386 * 217.70800 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.6218 3.4777 0.8982 8 6 3.4915 3.7084 -1.2729 9 6 4.5763 4.7920 -1.4427 10 6 5.8304 4.2764 -0.7150 11 1 6.1058 4.9624 0.0860 12 7 6.9427 4.1396 -1.6647 13 6 7.2879 5.4364 -2.2611 14 6 8.3467 5.2342 -3.3473 15 6 9.5896 4.5892 -2.7279 16 6 10.6132 4.3325 -3.8038 17 1 10.4005 4.6041 -4.8273 18 6 11.8235 3.7564 -3.4807 19 7 12.0824 3.4258 -2.2344 20 14 13.0951 3.4454 -4.8131 21 1 12.5636 3.9044 -6.1215 22 1 14.3385 4.1925 -4.4948 23 1 13.3946 1.9925 -4.8822 24 6 9.1949 3.2638 -2.0706 25 6 8.1103 3.5230 -1.0224 26 6 5.4640 2.8972 -0.1291 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5133 4.1672 -1.1294 33 1 3.4788 3.0428 -2.1361 34 1 4.2428 5.7278 -0.9943 35 1 4.7932 4.9408 -2.5004 36 1 7.6811 6.0980 -1.4892 37 1 6.3962 5.8823 -2.7018 38 1 8.6142 6.1987 -3.7789 39 1 7.9493 4.5838 -4.1265 40 1 10.0107 5.2573 -1.9765 41 1 12.9337 3.0201 -2.0071 42 1 8.8112 2.5815 -2.8290 43 1 10.0679 2.8214 -1.5906 44 1 8.4998 4.1934 -0.2563 45 1 7.8160 2.5791 -0.5634 46 1 5.7700 2.1009 -0.8076 47 1 5.9249 2.7638 0.8496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257060995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:08 Heat of formation + Delta-G solvation = -105.577003 kcal Electronic energy + Delta-G solvation = -24530.311595 eV Core-core repulsion = 21097.954515 eV Total energy + Delta-G solvation = -3432.357080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76755 -39.04258 -37.03588 -36.27720 -33.44877 -32.02404 -31.10062 -30.19209 -28.68445 -27.77753 -25.22045 -23.87926 -22.58946 -22.03854 -21.48517 -20.05179 -19.47667 -18.58181 -17.78216 -16.88335 -16.66834 -16.25156 -15.75587 -15.20961 -14.46695 -14.27342 -14.12851 -13.70069 -13.36445 -13.25815 -13.05899 -12.79445 -12.51585 -12.45534 -12.27752 -12.03957 -11.87493 -11.59927 -11.42228 -11.16975 -10.96393 -10.91212 -10.82723 -10.72981 -10.71041 -10.56632 -10.36660 -10.30710 -10.13700 -9.89037 -9.37456 -8.88958 -8.63735 -8.24999 -7.69188 -5.92976 -3.98026 2.12413 2.50036 3.33207 3.41248 3.45329 4.30857 4.37170 4.42560 4.49176 4.63604 4.69146 4.83007 4.95661 4.98041 5.28303 5.35174 5.37144 5.42262 5.43993 5.46214 5.54569 5.62460 5.65381 5.79684 5.85200 5.92272 6.00326 6.10661 6.17572 6.19651 6.27864 6.32658 6.38683 6.41540 6.68291 6.69066 6.90750 7.13769 7.22986 7.51079 7.66170 7.68266 7.77739 7.89298 8.10636 8.21866 8.53435 9.05949 9.66177 11.13191 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.003011 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.413054 B = 9298.200204 C = 9815.408594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.503 6.503 6 C -0.087 4.087 7 H 0.111 0.889 8 C -0.104 4.104 9 C -0.119 4.119 10 C 0.079 3.921 11 H 0.040 0.960 12 N -0.528 5.528 13 C 0.058 3.942 14 C -0.106 4.106 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.104 4.104 25 C 0.055 3.945 26 C -0.100 4.100 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -1.256 6.329 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.312 3.688 5 O -0.389 6.389 6 C -0.107 4.107 7 H 0.129 0.871 8 C -0.141 4.141 9 C -0.157 4.157 10 C -0.030 4.030 11 H 0.058 0.942 12 N -0.253 5.253 13 C -0.069 4.069 14 C -0.144 4.144 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.073 0.927 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.142 4.142 25 C -0.072 4.072 26 C -0.137 4.137 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.878 -1.959 6.052 22.784 hybrid contribution 1.067 0.098 0.109 1.077 sum -20.811 -1.861 6.161 21.783 Atomic orbital electron populations 1.21799 0.92683 1.02907 1.03481 1.23016 0.95301 0.80493 1.02638 1.86513 1.24833 1.32148 1.84162 1.23709 0.80318 0.92706 0.72058 1.90686 1.60361 1.43110 1.44768 1.22071 0.97279 0.89397 1.01944 0.87065 1.22265 0.98953 0.97361 0.95555 1.22267 0.93671 0.97318 1.02409 1.22212 0.92229 0.95183 0.93404 0.94212 1.62167 1.07271 1.23660 1.32208 1.22152 0.98315 0.89164 0.97307 1.21671 0.96052 0.99919 0.96745 1.18689 0.90723 0.92624 0.95089 1.21255 0.99512 1.39600 0.94312 0.92745 1.24976 0.98170 0.95711 0.95245 1.69892 1.23434 1.42880 1.16927 0.86587 0.81567 0.77819 0.82317 1.19856 1.21187 1.21096 1.21655 0.95811 1.00342 0.96375 1.22300 0.90692 0.97251 0.96982 1.22407 0.90693 0.98687 1.01951 0.91435 0.90318 0.91549 0.91198 0.91338 0.90664 0.90913 0.91698 0.89811 0.95958 0.92180 0.93291 0.92524 0.96249 0.93201 0.93871 0.89000 0.96098 0.92298 0.88749 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.95 10.20 -39.26 -0.40 -4.36 16 4 C 0.47 5.96 7.26 36.01 0.26 6.22 16 5 O -0.50 -7.99 15.55 -18.74 -0.29 -8.28 16 6 C -0.09 -0.96 3.39 -89.77 -0.30 -1.27 16 7 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.10 -1.06 6.25 -25.07 -0.16 -1.22 16 9 C -0.12 -1.36 5.87 -25.61 -0.15 -1.51 16 10 C 0.08 1.10 2.67 -66.59 -0.18 0.92 16 11 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 12 N -0.53 -9.32 4.42 -225.35 -1.00 -10.31 16 13 C 0.06 1.04 5.21 -3.84 -0.02 1.02 16 14 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 15 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 16 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 19 N -0.89 -25.78 11.37 55.43 0.63 -25.15 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.10 -2.50 5.13 -26.65 -0.14 -2.63 16 25 C 0.05 1.10 5.22 -3.83 -0.02 1.08 16 26 C -0.10 -1.35 4.12 -25.06 -0.10 -1.45 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.05 6.51 -51.93 -0.34 0.71 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.92 6.27 -51.93 -0.33 0.60 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.11 6.55 -51.93 -0.34 0.77 16 46 H 0.09 1.53 6.98 -51.93 -0.36 1.17 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -30.48 362.21 -9.96 -40.43 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.41 Total: -1.52 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.92 Total: -12.87 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.37 Total: -35.47 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.69 Total: -12.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.48 -9.96 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.143 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds