Wall clock time and date at job start Tue Mar 31 2020 08:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47007 * 2 1 4 4 C 1.34231 * 116.99630 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00545 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99638 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.67184 * 61.78462 * 6 4 3 8 8 C 1.54887 * 110.75717 * 298.54686 * 6 4 3 9 9 C 1.54266 * 104.19890 * 203.55768 * 8 6 4 10 10 C 1.53886 * 106.59746 * 23.60988 * 9 8 6 11 11 H 1.09001 * 110.03029 * 240.66995 * 10 9 8 12 12 N 1.46894 * 110.03139 * 119.28145 * 10 9 8 13 13 C 1.46847 * 110.99976 * 61.45821 * 12 10 9 14 14 C 1.53033 * 109.52573 * 185.83829 * 13 12 10 15 15 C 1.53119 * 109.27673 * 300.81824 * 14 13 12 16 16 C 1.50702 * 109.52248 * 177.55790 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.13319 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.84877 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.53118 * 109.21117 * 57.62443 * 15 14 13 25 25 C 1.46841 * 110.99985 * 185.66320 * 12 10 9 26 26 C 1.54269 * 106.59411 * 0.02562 * 10 9 8 27 27 H 1.08997 * 109.46931 * 60.00629 * 1 2 3 28 28 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46788 * 299.99917 * 1 2 3 30 30 H 1.09004 * 109.47157 * 239.99998 * 2 1 3 31 31 H 1.09001 * 109.47135 * 120.00097 * 2 1 3 32 32 H 1.08997 * 110.48863 * 84.88537 * 8 6 4 33 33 H 1.09000 * 110.49047 * 322.23752 * 8 6 4 34 34 H 1.08998 * 110.03501 * 264.32926 * 9 8 6 35 35 H 1.08993 * 110.03509 * 142.89118 * 9 8 6 36 36 H 1.09003 * 109.46420 * 65.81624 * 13 12 10 37 37 H 1.09003 * 109.45463 * 305.84763 * 13 12 10 38 38 H 1.09001 * 109.50499 * 180.88280 * 14 13 12 39 39 H 1.08997 * 109.50936 * 60.76070 * 14 13 12 40 40 H 1.09001 * 109.52390 * 297.68231 * 15 14 13 41 41 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.50535 * 62.31797 * 24 15 14 43 43 H 1.09002 * 109.50417 * 182.43491 * 24 15 14 44 44 H 1.08996 * 109.46834 * 294.18208 * 25 12 10 45 45 H 1.09004 * 109.46087 * 54.15854 * 25 12 10 46 46 H 1.09003 * 110.48586 * 95.06856 * 26 10 9 47 47 H 1.08999 * 110.48386 * 217.70800 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.6218 3.4777 0.8982 8 6 3.4915 3.7084 -1.2729 9 6 4.5763 4.7920 -1.4427 10 6 5.8304 4.2764 -0.7150 11 1 6.1058 4.9624 0.0860 12 7 6.9427 4.1396 -1.6647 13 6 7.2879 5.4364 -2.2611 14 6 8.3467 5.2342 -3.3473 15 6 9.5896 4.5892 -2.7279 16 6 10.6132 4.3325 -3.8038 17 1 10.4005 4.6041 -4.8273 18 6 11.8235 3.7564 -3.4807 19 7 12.0824 3.4258 -2.2344 20 14 13.0951 3.4454 -4.8131 21 1 12.5636 3.9044 -6.1215 22 1 14.3385 4.1925 -4.4948 23 1 13.3946 1.9925 -4.8822 24 6 9.1949 3.2638 -2.0706 25 6 8.1103 3.5230 -1.0224 26 6 5.4640 2.8972 -0.1291 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5133 4.1672 -1.1294 33 1 3.4788 3.0428 -2.1361 34 1 4.2428 5.7278 -0.9943 35 1 4.7932 4.9408 -2.5004 36 1 7.6811 6.0980 -1.4892 37 1 6.3962 5.8823 -2.7018 38 1 8.6142 6.1987 -3.7789 39 1 7.9493 4.5838 -4.1265 40 1 10.0107 5.2573 -1.9765 41 1 12.9337 3.0201 -2.0071 42 1 8.8112 2.5815 -2.8290 43 1 10.0679 2.8214 -1.5906 44 1 8.4998 4.1934 -0.2563 45 1 7.8160 2.5791 -0.5634 46 1 5.7700 2.1009 -0.8076 47 1 5.9249 2.7638 0.8496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257060995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:07 Heat of formation + Delta-G solvation = -122.434774 kcal Electronic energy + Delta-G solvation = -24531.042603 eV Core-core repulsion = 21097.954515 eV Total energy + Delta-G solvation = -3433.088088 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74526 -40.33585 -38.22633 -37.44411 -35.24186 -33.08051 -32.49746 -31.73171 -29.81219 -29.10732 -27.01371 -24.81265 -23.83455 -23.59940 -22.76595 -21.02684 -20.64551 -20.33472 -18.78104 -18.45144 -17.80305 -17.56741 -16.82633 -16.59892 -16.20291 -15.58374 -15.11652 -14.85996 -14.74547 -14.56475 -14.25055 -14.23690 -14.11265 -13.67236 -13.31043 -13.02528 -13.01286 -12.87413 -12.83576 -12.53002 -12.39330 -12.28562 -12.13742 -12.01985 -11.95379 -11.85769 -11.81607 -11.52866 -11.47075 -11.33208 -11.29916 -10.74595 -10.62007 -10.37282 -9.12212 -8.08215 -6.21523 1.15201 1.38787 1.40580 1.52101 1.65952 2.43217 3.03687 3.18624 3.39006 3.50844 3.91717 4.00337 4.08206 4.11171 4.24022 4.26226 4.35058 4.37895 4.41231 4.42384 4.51488 4.54184 4.64573 4.74144 4.80727 4.86204 4.90933 4.93619 4.95196 4.98948 5.08667 5.13011 5.16409 5.21202 5.25607 5.30477 5.36169 5.38676 5.46910 5.58433 5.64118 6.01426 6.04580 6.33216 6.41056 6.44753 6.72122 6.90824 7.46185 8.96470 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.003011 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.413054 B = 9298.200204 C = 9815.408594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.471 3.529 5 O -0.544 6.544 6 C -0.080 4.080 7 H 0.144 0.856 8 C -0.096 4.096 9 C -0.113 4.113 10 C 0.076 3.924 11 H 0.049 0.951 12 N -0.536 5.536 13 C 0.065 3.935 14 C -0.100 4.100 15 C 0.044 3.956 16 C -0.531 4.531 17 H 0.051 0.949 18 C 0.009 3.991 19 N -0.919 5.919 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.282 1.282 24 C -0.095 4.095 25 C 0.069 3.931 26 C -0.100 4.100 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.021 0.979 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.049 0.951 40 H -0.012 1.012 41 H 0.259 0.741 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.658 -0.172 6.328 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.315 3.685 5 O -0.434 6.434 6 C -0.099 4.099 7 H 0.161 0.839 8 C -0.134 4.134 9 C -0.150 4.150 10 C -0.032 4.032 11 H 0.067 0.933 12 N -0.261 5.261 13 C -0.062 4.062 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.569 4.569 17 H 0.069 0.931 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.133 4.133 25 C -0.058 4.058 26 C -0.138 4.138 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.006 0.994 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.491 -0.860 6.047 25.242 hybrid contribution 1.851 -0.285 0.124 1.876 sum -22.641 -1.144 6.171 23.495 Atomic orbital electron populations 1.21809 0.90087 1.04310 1.03899 1.23282 0.97308 0.79514 1.02231 1.86511 1.23743 1.33341 1.83561 1.24059 0.80626 0.92915 0.70863 1.90677 1.61337 1.44521 1.46834 1.22099 0.95037 0.88853 1.03907 0.83859 1.22250 1.00084 0.96656 0.94364 1.22259 0.92323 0.98767 1.01667 1.22367 0.91857 0.95690 0.93266 0.93319 1.62108 1.06946 1.23704 1.33380 1.22082 0.98591 0.89260 0.96256 1.21543 0.95238 0.99495 0.97508 1.18664 0.92134 0.92679 0.93987 1.21636 1.00675 1.39804 0.94803 0.93071 1.25772 1.00213 0.95513 0.97379 1.70034 1.23889 1.43300 1.18649 0.85574 0.79017 0.77666 0.79808 1.19113 1.20562 1.20781 1.21412 0.95977 0.99248 0.96670 1.21992 0.90660 0.97860 0.95337 1.22319 0.93053 0.97413 1.01055 0.91134 0.88454 0.90933 0.91967 0.91556 0.87588 0.92349 0.88783 0.90640 0.96112 0.88618 0.92710 0.93220 0.99408 0.93161 0.95548 0.92339 0.96774 0.91597 0.91993 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 10.29 71.98 0.74 -0.67 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.19 10.20 -51.43 -0.52 -7.71 16 4 C 0.47 11.42 7.26 71.24 0.52 11.94 16 5 O -0.54 -17.48 15.55 21.99 0.34 -17.14 16 6 C -0.08 -1.56 3.39 -10.24 -0.03 -1.60 16 7 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 8 C -0.10 -1.64 6.25 31.67 0.20 -1.44 16 9 C -0.11 -2.15 5.87 31.32 0.18 -1.97 16 10 C 0.08 1.98 2.67 45.65 0.12 2.10 16 11 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 12 N -0.54 -18.51 4.42 -866.86 -3.83 -22.35 16 13 C 0.07 2.23 5.21 86.32 0.45 2.68 16 14 C -0.10 -4.22 5.32 30.64 0.16 -4.06 16 15 C 0.04 2.29 2.16 -11.46 -0.02 2.26 16 16 C -0.53 -30.37 8.56 25.60 0.22 -30.15 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 18 C 0.01 0.53 5.31 84.66 0.45 0.98 16 19 N -0.92 -54.85 11.37 21.45 0.24 -54.61 16 20 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 C -0.09 -4.77 5.13 30.65 0.16 -4.61 16 25 C 0.07 2.83 5.22 86.33 0.45 3.28 16 26 C -0.10 -2.63 4.12 31.68 0.13 -2.50 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.07 1.13 8.13 -2.39 -0.02 1.12 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.18 8.04 -2.39 -0.02 1.16 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.62 6.51 -2.39 -0.02 1.61 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 2.63 6.27 -2.39 -0.01 2.61 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 3.31 6.17 -2.39 -0.01 3.30 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 2.57 6.55 -2.39 -0.02 2.56 16 46 H 0.06 2.05 6.98 -2.39 -0.02 2.03 16 47 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.87 362.21 3.34 -65.53 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.92 Total: 11.66 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.17 Total: -22.46 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -3.59 Total: -76.95 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.18 Total: -24.86 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.87 3.34 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.901 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds