Wall clock time and date at job start Tue Mar 31 2020 08:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.45196 * 109.47092 * 2 1 4 4 C 1.34227 * 116.99554 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00277 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99881 * 179.97438 * 4 3 2 7 7 H 1.08998 * 110.54220 * 302.61801 * 6 4 3 8 8 C 1.54464 * 110.65867 * 65.24180 * 6 4 3 9 9 C 1.53878 * 106.68437 * 142.05195 * 8 6 4 10 10 C 1.54262 * 106.59988 * 0.16013 * 9 8 6 11 11 H 1.08996 * 110.49142 * 95.06731 * 10 9 8 12 12 N 1.46900 * 110.59964 * 217.65686 * 10 9 8 13 13 C 1.46842 * 111.00100 * 298.80732 * 12 10 9 14 14 C 1.53035 * 109.52686 * 174.16151 * 13 12 10 15 15 C 1.53121 * 109.27913 * 59.17786 * 14 13 12 16 16 C 1.50704 * 109.57403 * 182.40987 * 15 14 13 17 17 H 1.08004 * 119.99420 * 119.71729 * 16 15 14 18 18 C 1.37875 * 120.00199 * 299.71860 * 16 15 14 19 19 N 1.31517 * 119.99644 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47129 * 89.99684 * 20 18 16 22 22 H 1.48494 * 109.47191 * 209.99763 * 20 18 16 23 23 H 1.48501 * 109.47297 * 330.00023 * 20 18 16 24 24 C 1.53118 * 109.15967 * 302.34675 * 15 14 13 25 25 C 1.46847 * 111.00195 * 174.59754 * 12 10 9 26 26 C 1.54895 * 104.19596 * 336.38704 * 10 9 8 27 27 H 1.08997 * 109.46437 * 59.99799 * 1 2 3 28 28 H 1.08997 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46823 * 300.00102 * 1 2 3 30 30 H 1.08998 * 109.46823 * 239.99898 * 2 1 3 31 31 H 1.09000 * 109.46893 * 120.00397 * 2 1 3 32 32 H 1.09003 * 109.85645 * 22.81664 * 8 6 4 33 33 H 1.08993 * 110.16763 * 261.45581 * 8 6 4 34 34 H 1.09001 * 110.03299 * 240.87295 * 9 8 6 35 35 H 1.08996 * 110.07545 * 119.46890 * 9 8 6 36 36 H 1.09002 * 109.46453 * 294.17622 * 13 12 10 37 37 H 1.08999 * 109.46198 * 54.14454 * 13 12 10 38 38 H 1.09005 * 109.50242 * 299.23783 * 14 13 12 39 39 H 1.08996 * 109.54228 * 179.14474 * 14 13 12 40 40 H 1.08999 * 109.51909 * 62.25119 * 15 14 13 41 41 H 0.96999 * 119.99301 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.50562 * 297.71378 * 24 15 14 43 43 H 1.09006 * 109.50247 * 177.59107 * 24 15 14 44 44 H 1.09004 * 109.46289 * 305.85622 * 25 12 10 45 45 H 1.08999 * 109.46355 * 65.82308 * 25 12 10 46 46 H 1.08996 * 110.75467 * 156.25298 * 26 10 9 47 47 H 1.09000 * 110.75685 * 279.44755 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9209 2.9372 0.0000 7 1 3.5591 3.5005 -0.8602 8 6 3.5693 3.6730 1.3118 9 6 4.8037 4.5081 1.6945 10 6 5.8626 4.2559 0.6014 11 1 5.8166 5.0334 -0.1610 12 7 7.2074 4.1930 1.1892 13 6 7.5550 5.4601 1.8448 14 6 8.8954 5.3110 2.5680 15 6 9.9766 4.9258 1.5545 16 6 11.2876 4.7195 2.2686 17 1 11.7804 3.7594 2.2258 18 6 11.8577 5.7562 2.9764 19 7 11.2577 6.9254 3.0280 20 14 13.4830 5.5006 3.8609 21 1 14.6029 5.8384 2.9460 22 1 13.5390 6.3787 5.0571 23 1 13.5992 4.0815 4.2826 24 6 9.5671 3.6287 0.8514 25 6 8.2072 3.8266 0.1780 26 6 5.4689 2.8835 0.0007 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.3513 2.9479 2.0960 33 1 2.7101 4.3257 1.1579 34 1 5.1848 4.1884 2.6644 35 1 4.5444 5.5663 1.7261 36 1 7.6324 6.2476 1.0952 37 1 6.7802 5.7203 2.5660 38 1 8.8147 4.5331 3.3273 39 1 9.1610 6.2559 3.0420 40 1 10.0846 5.7214 0.8172 41 1 11.6591 7.6549 3.5256 42 1 9.4969 2.8244 1.5836 43 1 10.3122 3.3721 0.0983 44 1 7.9061 2.9004 -0.3116 45 1 8.2816 4.6218 -0.5639 46 1 5.8523 2.7820 -1.0145 47 1 5.8268 2.0691 0.6305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257060996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:11 Heat of formation + Delta-G solvation = -107.872737 kcal Electronic energy + Delta-G solvation = -24419.214357 eV Core-core repulsion = 20986.757726 eV Total energy + Delta-G solvation = -3432.456631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81650 -38.98871 -37.09283 -36.30064 -33.46660 -32.06211 -31.12485 -30.08393 -28.84880 -27.73821 -25.23928 -23.89642 -22.58977 -21.90018 -21.58962 -19.93485 -19.73003 -18.58479 -17.76097 -16.95047 -16.67252 -16.25349 -15.72428 -15.25170 -14.46443 -14.26090 -13.99926 -13.81838 -13.45753 -13.29005 -13.06975 -12.86024 -12.52782 -12.41205 -12.29208 -12.01494 -11.91299 -11.80574 -11.46418 -11.13287 -10.93555 -10.88234 -10.85819 -10.76916 -10.71573 -10.57883 -10.37268 -10.31365 -10.14492 -9.90325 -9.37655 -8.88547 -8.65280 -8.25182 -7.70508 -5.93516 -3.98348 2.07315 2.45810 3.33839 3.40460 3.44516 4.24378 4.36992 4.40484 4.48730 4.60109 4.65926 4.81143 4.94174 4.94352 5.30670 5.32895 5.36568 5.37361 5.41070 5.42811 5.50191 5.59412 5.62285 5.78190 5.85340 5.91877 5.99962 6.10533 6.18247 6.22804 6.24478 6.29876 6.38815 6.42098 6.66186 6.69378 6.91924 7.14535 7.22217 7.49599 7.61685 7.67568 7.76700 7.88640 8.10238 8.20650 8.53224 9.05394 9.65762 11.12690 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.002760 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.949436 B =10143.127511 C =10427.998965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.503 6.503 6 C -0.087 4.087 7 H 0.110 0.890 8 C -0.105 4.105 9 C -0.117 4.117 10 C 0.079 3.921 11 H 0.043 0.957 12 N -0.527 5.527 13 C 0.057 3.943 14 C -0.104 4.104 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.106 4.106 25 C 0.059 3.941 26 C -0.099 4.099 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.070 0.930 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 -7.644 -6.285 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.312 3.688 5 O -0.390 6.390 6 C -0.107 4.107 7 H 0.128 0.872 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.030 4.030 11 H 0.061 0.939 12 N -0.252 5.252 13 C -0.070 4.070 14 C -0.142 4.142 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.144 4.144 25 C -0.069 4.069 26 C -0.137 4.137 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.088 0.912 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.064 -8.146 -5.839 23.327 hybrid contribution 0.874 0.394 -0.192 0.978 sum -20.190 -7.752 -6.031 22.453 Atomic orbital electron populations 1.21803 0.92655 1.02925 1.03517 1.23019 0.95336 0.80460 1.02620 1.86519 1.24829 1.32181 1.84125 1.23731 0.80312 0.92738 0.72006 1.90680 1.60372 1.43073 1.44850 1.21961 0.97444 0.89527 1.01752 0.87196 1.22066 0.98848 0.98638 0.94722 1.22200 0.93589 0.99441 1.00265 1.22407 0.90287 0.95406 0.94929 0.93949 1.62109 1.00049 1.33261 1.29786 1.22276 0.99623 0.88154 0.96954 1.21656 0.90784 1.03142 0.98647 1.18684 0.93414 0.91393 0.93609 1.21224 1.05247 0.97305 1.30896 0.92784 1.24969 0.97327 0.95262 0.96527 1.69881 1.38696 1.02114 1.42523 0.86638 0.84304 0.78039 0.79265 1.20847 1.21328 1.19970 1.21676 0.92714 1.01103 0.98928 1.22138 0.93464 0.98550 0.92729 1.22518 0.90294 0.98939 1.01920 0.91517 0.90296 0.91432 0.91315 0.91222 0.91370 0.90641 0.89927 0.91554 0.96089 0.92454 0.93851 0.89010 0.96238 0.93167 0.92487 0.93279 0.92191 0.95951 0.91178 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.82 10.22 -39.25 -0.40 -4.22 16 4 C 0.47 5.73 7.12 36.01 0.26 5.98 16 5 O -0.50 -7.64 15.46 -18.75 -0.29 -7.93 16 6 C -0.09 -0.93 3.37 -90.00 -0.30 -1.24 16 7 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 8 C -0.10 -1.05 6.38 -25.51 -0.16 -1.21 16 9 C -0.12 -1.41 5.21 -25.61 -0.13 -1.55 16 10 C 0.08 1.10 2.58 -66.05 -0.17 0.93 16 11 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 12 N -0.53 -9.31 4.49 -224.71 -1.01 -10.32 16 13 C 0.06 1.11 5.29 -3.84 -0.02 1.09 16 14 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 15 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 16 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 19 N -0.89 -25.58 11.37 55.43 0.63 -24.95 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.11 -2.28 5.32 -26.65 -0.14 -2.43 16 25 C 0.06 1.08 5.29 -3.83 -0.02 1.06 16 26 C -0.10 -1.29 4.24 -24.73 -0.10 -1.39 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.12 7.78 -51.93 -0.40 0.72 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.01 6.83 -51.93 -0.35 0.66 16 38 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.99 6.72 -51.93 -0.35 0.64 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.88 7.81 -51.93 -0.41 0.47 16 47 H 0.09 1.44 7.46 -51.93 -0.39 1.05 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -30.19 363.59 -10.03 -40.23 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.51 Total: -1.83 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.91 Total: -12.97 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.38 Total: -35.28 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.69 Total: -12.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.19 -10.03 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.646 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds