Wall clock time and date at job start Tue Mar 31 2020 08:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.45196 * 109.47092 * 2 1 4 4 C 1.34227 * 116.99554 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00277 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99881 * 179.97438 * 4 3 2 7 7 H 1.08998 * 110.54220 * 302.61801 * 6 4 3 8 8 C 1.54464 * 110.65867 * 65.24180 * 6 4 3 9 9 C 1.53878 * 106.68437 * 142.05195 * 8 6 4 10 10 C 1.54262 * 106.59988 * 0.16013 * 9 8 6 11 11 H 1.08996 * 110.49142 * 95.06731 * 10 9 8 12 12 N 1.46900 * 110.59964 * 217.65686 * 10 9 8 13 13 C 1.46842 * 111.00100 * 298.80732 * 12 10 9 14 14 C 1.53035 * 109.52686 * 174.16151 * 13 12 10 15 15 C 1.53121 * 109.27913 * 59.17786 * 14 13 12 16 16 C 1.50704 * 109.57403 * 182.40987 * 15 14 13 17 17 H 1.08004 * 119.99420 * 119.71729 * 16 15 14 18 18 C 1.37875 * 120.00199 * 299.71860 * 16 15 14 19 19 N 1.31517 * 119.99644 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47129 * 89.99684 * 20 18 16 22 22 H 1.48494 * 109.47191 * 209.99763 * 20 18 16 23 23 H 1.48501 * 109.47297 * 330.00023 * 20 18 16 24 24 C 1.53118 * 109.15967 * 302.34675 * 15 14 13 25 25 C 1.46847 * 111.00195 * 174.59754 * 12 10 9 26 26 C 1.54895 * 104.19596 * 336.38704 * 10 9 8 27 27 H 1.08997 * 109.46437 * 59.99799 * 1 2 3 28 28 H 1.08997 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46823 * 300.00102 * 1 2 3 30 30 H 1.08998 * 109.46823 * 239.99898 * 2 1 3 31 31 H 1.09000 * 109.46893 * 120.00397 * 2 1 3 32 32 H 1.09003 * 109.85645 * 22.81664 * 8 6 4 33 33 H 1.08993 * 110.16763 * 261.45581 * 8 6 4 34 34 H 1.09001 * 110.03299 * 240.87295 * 9 8 6 35 35 H 1.08996 * 110.07545 * 119.46890 * 9 8 6 36 36 H 1.09002 * 109.46453 * 294.17622 * 13 12 10 37 37 H 1.08999 * 109.46198 * 54.14454 * 13 12 10 38 38 H 1.09005 * 109.50242 * 299.23783 * 14 13 12 39 39 H 1.08996 * 109.54228 * 179.14474 * 14 13 12 40 40 H 1.08999 * 109.51909 * 62.25119 * 15 14 13 41 41 H 0.96999 * 119.99301 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.50562 * 297.71378 * 24 15 14 43 43 H 1.09006 * 109.50247 * 177.59107 * 24 15 14 44 44 H 1.09004 * 109.46289 * 305.85622 * 25 12 10 45 45 H 1.08999 * 109.46355 * 65.82308 * 25 12 10 46 46 H 1.08996 * 110.75467 * 156.25298 * 26 10 9 47 47 H 1.09000 * 110.75685 * 279.44755 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9209 2.9372 0.0000 7 1 3.5591 3.5005 -0.8602 8 6 3.5693 3.6730 1.3118 9 6 4.8037 4.5081 1.6945 10 6 5.8626 4.2559 0.6014 11 1 5.8166 5.0334 -0.1610 12 7 7.2074 4.1930 1.1892 13 6 7.5550 5.4601 1.8448 14 6 8.8954 5.3110 2.5680 15 6 9.9766 4.9258 1.5545 16 6 11.2876 4.7195 2.2686 17 1 11.7804 3.7594 2.2258 18 6 11.8577 5.7562 2.9764 19 7 11.2577 6.9254 3.0280 20 14 13.4830 5.5006 3.8609 21 1 14.6029 5.8384 2.9460 22 1 13.5390 6.3787 5.0571 23 1 13.5992 4.0815 4.2826 24 6 9.5671 3.6287 0.8514 25 6 8.2072 3.8266 0.1780 26 6 5.4689 2.8835 0.0007 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.3513 2.9479 2.0960 33 1 2.7101 4.3257 1.1579 34 1 5.1848 4.1884 2.6644 35 1 4.5444 5.5663 1.7261 36 1 7.6324 6.2476 1.0952 37 1 6.7802 5.7203 2.5660 38 1 8.8147 4.5331 3.3273 39 1 9.1610 6.2559 3.0420 40 1 10.0846 5.7214 0.8172 41 1 11.6591 7.6549 3.5256 42 1 9.4969 2.8244 1.5836 43 1 10.3122 3.3721 0.0983 44 1 7.9061 2.9004 -0.3116 45 1 8.2816 4.6218 -0.5639 46 1 5.8523 2.7820 -1.0145 47 1 5.8268 2.0691 0.6305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257060996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:10 Heat of formation + Delta-G solvation = -124.223057 kcal Electronic energy + Delta-G solvation = -24419.923360 eV Core-core repulsion = 20986.757726 eV Total energy + Delta-G solvation = -3433.165634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74781 -40.27960 -38.25944 -37.42428 -35.25402 -33.09258 -32.49623 -31.66036 -29.93525 -29.05541 -27.01778 -24.80997 -23.77628 -23.57601 -22.76008 -20.88574 -20.87050 -20.36541 -18.70568 -18.44467 -17.85470 -17.53279 -16.76027 -16.58465 -16.24696 -15.51648 -15.06287 -14.89979 -14.74602 -14.61021 -14.36676 -14.17458 -14.04314 -13.69317 -13.36033 -13.16958 -12.94842 -12.86326 -12.74336 -12.50295 -12.49492 -12.35958 -12.15568 -11.99414 -11.93369 -11.89493 -11.71869 -11.56723 -11.51065 -11.35048 -11.21104 -10.75679 -10.61487 -10.36001 -9.13331 -8.07492 -6.20449 1.14935 1.40449 1.41321 1.51729 1.65849 2.43999 3.01400 3.19141 3.40457 3.49130 3.89694 4.00915 4.08063 4.10998 4.25472 4.25953 4.33345 4.35777 4.42682 4.45291 4.49995 4.52841 4.62770 4.68535 4.78434 4.85605 4.91527 4.93745 4.95566 4.98004 5.10412 5.11234 5.16358 5.22018 5.22903 5.29424 5.36448 5.38907 5.47080 5.58318 5.64958 6.02542 6.05206 6.34217 6.41451 6.43740 6.72175 6.90656 7.46857 8.97041 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.002760 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.949436 B =10143.127511 C =10427.998965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.540 6.540 6 C -0.081 4.081 7 H 0.140 0.860 8 C -0.096 4.096 9 C -0.115 4.115 10 C 0.076 3.924 11 H 0.054 0.946 12 N -0.536 5.536 13 C 0.071 3.929 14 C -0.095 4.095 15 C 0.044 3.956 16 C -0.534 4.534 17 H 0.048 0.952 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 C -0.100 4.100 25 C 0.067 3.933 26 C -0.096 4.096 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.015 0.985 37 H 0.078 0.922 38 H 0.028 0.972 39 H 0.062 0.938 40 H -0.011 1.011 41 H 0.260 0.740 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.023 0.977 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.324 -7.829 -6.828 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.316 3.684 5 O -0.430 6.430 6 C -0.100 4.100 7 H 0.158 0.842 8 C -0.134 4.134 9 C -0.153 4.153 10 C -0.032 4.032 11 H 0.072 0.928 12 N -0.262 5.262 13 C -0.057 4.057 14 C -0.134 4.134 15 C 0.026 3.974 16 C -0.572 4.572 17 H 0.066 0.934 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.138 4.138 25 C -0.061 4.061 26 C -0.134 4.134 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.007 0.993 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.041 0.959 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.123 -8.333 -6.389 25.395 hybrid contribution 1.488 0.415 -0.030 1.545 sum -21.635 -7.918 -6.419 23.916 Atomic orbital electron populations 1.21815 0.90243 1.04311 1.03834 1.23284 0.97212 0.79454 1.02336 1.86517 1.23839 1.33429 1.83561 1.24001 0.80597 0.92853 0.70925 1.90672 1.61251 1.44337 1.46732 1.21972 0.95534 0.89117 1.03362 0.84226 1.22031 0.98770 0.98533 0.94046 1.22187 0.93705 1.00766 0.98598 1.22534 0.88365 0.96389 0.95882 0.92829 1.62040 1.01736 1.32076 1.30301 1.22015 0.97683 0.88943 0.97026 1.21419 0.93018 1.00794 0.98157 1.18657 0.93286 0.92192 0.93280 1.21584 1.06692 0.97246 1.31648 0.93381 1.25729 1.00647 0.95028 0.97225 1.70011 1.39965 1.02682 1.42940 0.85642 0.80266 0.78050 0.78204 1.20183 1.20725 1.19583 1.21547 0.94976 0.98668 0.98624 1.22018 0.91937 0.99649 0.92495 1.22414 0.92304 0.97230 1.01470 0.91042 0.88406 0.91202 0.91464 0.91787 0.91885 0.87764 0.91694 0.90027 0.96652 0.90389 0.95361 0.91966 0.99322 0.93067 0.93450 0.93084 0.90007 0.95918 0.90661 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 71.99 0.74 -0.57 16 2 C 0.05 0.79 6.19 71.99 0.45 1.23 16 3 O -0.36 -6.87 10.22 -51.39 -0.53 -7.39 16 4 C 0.47 10.73 7.12 71.24 0.51 11.24 16 5 O -0.54 -16.14 15.46 21.95 0.34 -15.80 16 6 C -0.08 -1.50 3.37 -10.39 -0.04 -1.54 16 7 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.10 -1.63 6.38 31.39 0.20 -1.43 16 9 C -0.11 -2.49 5.21 31.32 0.16 -2.32 16 10 C 0.08 1.99 2.58 45.99 0.12 2.10 16 11 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 12 N -0.54 -18.54 4.49 -864.85 -3.88 -22.42 16 13 C 0.07 2.74 5.29 86.33 0.46 3.19 16 14 C -0.10 -4.66 5.12 30.65 0.16 -4.50 16 15 C 0.04 2.31 2.16 -11.46 -0.02 2.28 16 16 C -0.53 -30.52 8.56 25.60 0.22 -30.30 16 17 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 18 C 0.01 0.69 5.31 84.65 0.45 1.13 16 19 N -0.92 -53.72 11.37 21.45 0.24 -53.48 16 20 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 C -0.10 -4.38 5.32 30.65 0.16 -4.22 16 25 C 0.07 2.40 5.29 86.33 0.46 2.86 16 26 C -0.10 -2.34 4.24 31.89 0.14 -2.20 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.06 1.16 7.83 -2.39 -0.02 1.14 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.66 7.78 -2.39 -0.02 1.64 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 2.67 6.83 -2.39 -0.02 2.66 16 38 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.06 3.39 6.17 -2.39 -0.01 3.38 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.05 2.15 8.14 -2.38 -0.02 2.14 16 44 H 0.08 2.60 6.72 -2.38 -0.02 2.59 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.73 7.81 -2.39 -0.02 1.71 16 47 H 0.07 2.03 7.46 -2.39 -0.02 2.02 16 Total: -1.00 -66.99 363.59 3.27 -63.71 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.92 Total: 11.65 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.15 Total: -23.03 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -3.64 Total: -75.89 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.19 Total: -23.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -66.99 3.27 -63.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.510 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds