Wall clock time and date at job start Tue Mar 31 2020 08:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34229 * 116.99958 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99809 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.01743 * 58.60712 * 6 4 3 8 8 C 1.54263 * 110.03321 * 297.16062 * 6 4 3 9 9 C 1.54890 * 104.19711 * 217.10865 * 8 6 4 10 10 C 1.54887 * 102.75012 * 37.94189 * 9 8 6 11 11 H 1.09001 * 110.48667 * 80.73332 * 10 9 8 12 12 N 1.46894 * 110.48717 * 203.37944 * 10 9 8 13 13 C 1.46851 * 110.99955 * 165.56490 * 12 10 9 14 14 C 1.53040 * 109.52365 * 185.84226 * 13 12 10 15 15 C 1.53118 * 109.27581 * 300.81865 * 14 13 12 16 16 C 1.53121 * 109.16278 * 57.65537 * 15 14 13 17 17 H 1.09008 * 109.53470 * 62.29960 * 16 15 14 18 18 C 1.50697 * 109.50550 * 182.40419 * 16 15 14 19 19 H 1.08002 * 119.99625 * 119.80357 * 18 16 15 20 20 C 1.37872 * 119.99996 * 299.80170 * 18 16 15 21 21 N 1.31523 * 119.99899 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00233 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47157 * 59.99762 * 22 20 18 24 24 H 1.48501 * 109.47261 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47068 * 300.00029 * 22 20 18 26 26 C 1.46842 * 111.00438 * 289.77423 * 12 10 9 27 27 C 1.53872 * 110.02946 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47002 * 60.00200 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00466 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99242 * 2 1 3 32 32 H 1.09000 * 109.47050 * 239.99534 * 2 1 3 33 33 H 1.09010 * 110.48465 * 335.78789 * 8 6 4 34 34 H 1.09000 * 110.48918 * 98.42642 * 8 6 4 35 35 H 1.08998 * 110.75581 * 279.62707 * 9 8 6 36 36 H 1.09006 * 110.75555 * 156.25417 * 9 8 6 37 37 H 1.09009 * 109.45995 * 305.85421 * 13 12 10 38 38 H 1.08998 * 109.46337 * 65.82221 * 13 12 10 39 39 H 1.08991 * 109.50284 * 180.87873 * 14 13 12 40 40 H 1.08998 * 109.50095 * 60.76037 * 14 13 12 41 41 H 1.08997 * 109.52702 * 297.74940 * 15 14 13 42 42 H 1.08993 * 109.52440 * 177.55817 * 15 14 13 43 43 H 0.96999 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.45994 * 294.18173 * 26 12 10 45 45 H 1.09008 * 109.45912 * 54.14042 * 26 12 10 46 46 H 1.09007 * 110.03119 * 238.57036 * 27 6 4 47 47 H 1.09004 * 110.03374 * 359.94406 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.5708 3.4863 0.8730 8 6 3.5110 3.6782 -1.2907 9 6 4.7580 4.5206 -1.6575 10 6 5.9289 3.5752 -1.2914 11 1 6.0932 2.8463 -2.0851 12 7 7.1530 4.3469 -1.0388 13 6 8.1661 3.5220 -0.3681 14 6 9.3669 4.3928 0.0088 15 6 9.9519 5.0229 -1.2582 16 6 8.8635 5.8369 -1.9633 17 1 8.5344 6.6467 -1.3120 18 6 9.4146 6.4123 -3.2424 19 1 8.9642 6.1533 -4.1892 20 6 10.4939 7.2694 -3.2040 21 7 11.0420 7.5853 -2.0509 22 14 11.1767 7.9833 -4.7894 23 1 10.1189 8.7688 -5.4745 24 1 12.3280 8.8681 -4.4784 25 1 11.6263 6.8799 -5.6759 26 6 7.6773 4.9244 -2.2830 27 6 5.4581 2.8718 -0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.2848 2.9659 -2.0843 34 1 2.6547 4.3260 -1.1028 35 1 4.7970 5.4325 -1.0617 36 1 4.7676 4.7529 -2.7225 37 1 7.7385 3.0832 0.5334 38 1 8.4904 2.7273 -1.0400 39 1 10.1252 3.7772 0.4925 40 1 9.0459 5.1794 0.6916 41 1 10.3085 4.2374 -1.9245 42 1 10.7805 5.6782 -0.9899 43 1 11.8016 8.1880 -2.0239 44 1 8.0038 4.1231 -2.9459 45 1 6.8945 5.5041 -2.7723 46 1 5.8539 3.3899 0.8726 47 1 5.7876 1.8328 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257062042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:47 Heat of formation + Delta-G solvation = -106.364326 kcal Electronic energy + Delta-G solvation = -24550.198930 eV Core-core repulsion = 21117.807709 eV Total energy + Delta-G solvation = -3432.391221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86942 -38.93790 -37.10508 -36.25930 -33.33695 -32.09771 -31.37273 -30.07097 -28.86135 -27.48541 -24.89436 -24.02115 -22.74812 -22.24332 -21.20952 -20.23934 -19.25032 -18.62449 -17.95679 -16.82783 -16.64814 -16.46192 -15.62906 -14.83212 -14.63579 -14.25547 -13.96513 -13.81809 -13.50648 -13.27725 -13.05163 -12.93589 -12.44454 -12.35449 -12.27322 -11.98933 -11.87802 -11.75980 -11.46294 -11.17972 -10.91081 -10.88015 -10.80950 -10.79260 -10.64052 -10.61693 -10.51843 -10.31020 -10.01070 -9.78124 -9.40304 -8.95891 -8.66093 -8.26446 -7.61401 -5.94193 -4.00222 2.06934 2.46522 3.34068 3.38766 3.41174 4.27474 4.44005 4.47659 4.57432 4.59286 4.62402 4.67920 4.93315 5.13736 5.30351 5.35678 5.41863 5.42596 5.45024 5.52494 5.56811 5.62252 5.68166 5.82289 5.84053 5.90035 6.06074 6.13928 6.19537 6.19892 6.32074 6.37805 6.39662 6.52014 6.58545 6.77808 6.81162 7.02733 7.27026 7.45785 7.60723 7.72865 7.79198 7.89614 8.12884 8.21588 8.52227 9.03714 9.63782 11.11746 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.034475 B = 0.002929 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.993257 B = 9555.785097 C =10041.599971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.468 3.532 5 O -0.507 6.507 6 C -0.083 4.083 7 H 0.111 0.889 8 C -0.108 4.108 9 C -0.113 4.113 10 C 0.079 3.921 11 H 0.041 0.959 12 N -0.529 5.529 13 C 0.059 3.941 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.056 3.944 17 H 0.034 0.966 18 C -0.514 4.514 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.068 3.932 27 C -0.117 4.117 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.021 0.979 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.260 0.740 44 H 0.017 0.983 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.244 -11.653 5.517 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.311 3.689 5 O -0.395 6.395 6 C -0.102 4.102 7 H 0.129 0.871 8 C -0.146 4.146 9 C -0.151 4.151 10 C -0.030 4.030 11 H 0.059 0.941 12 N -0.254 5.254 13 C -0.069 4.069 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.037 3.963 17 H 0.052 0.948 18 C -0.553 4.553 19 H 0.070 0.930 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.059 4.059 27 C -0.154 4.154 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.011 -11.482 5.906 22.161 hybrid contribution 0.668 -0.580 -1.413 1.667 sum -17.342 -12.062 4.494 21.597 Atomic orbital electron populations 1.21802 0.92622 1.02915 1.03573 1.23022 0.95381 0.80489 1.02555 1.86527 1.24740 1.32120 1.84051 1.23892 0.80308 0.93065 0.71666 1.90641 1.60290 1.43171 1.45365 1.21724 0.97124 0.89192 1.02171 0.87070 1.22294 0.99111 0.98535 0.94688 1.22548 0.92094 0.98680 1.01753 1.22429 0.91446 0.93821 0.95269 0.94146 1.62150 1.04112 1.33178 1.25960 1.22081 0.92958 0.94458 0.97368 1.21672 0.95251 0.98437 1.00111 1.21652 1.01541 0.98280 0.93433 1.18651 0.89277 0.92665 0.95715 0.94780 1.21116 1.14416 1.26994 0.92782 0.92972 1.24931 0.96717 0.96277 0.95916 1.69888 1.23461 1.35404 1.23979 0.86702 0.78507 0.79026 0.83980 1.20319 1.21346 1.20433 1.22311 0.98521 0.97038 0.88027 1.22392 0.90797 1.02532 0.99689 0.91414 0.90313 0.91463 0.91321 0.91300 0.91500 0.90209 0.89639 0.91167 0.92046 0.96048 0.93641 0.92118 0.95261 0.89188 0.93043 0.96500 0.92160 0.89461 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.85 10.20 -39.26 -0.40 -4.25 16 4 C 0.47 5.75 7.10 36.01 0.26 6.01 16 5 O -0.51 -7.63 14.96 -18.75 -0.28 -7.91 16 6 C -0.08 -0.92 3.41 -90.66 -0.31 -1.23 16 7 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 8 C -0.11 -1.14 6.34 -25.07 -0.16 -1.30 16 9 C -0.11 -1.47 5.69 -24.74 -0.14 -1.61 16 10 C 0.08 1.20 2.60 -66.03 -0.17 1.03 16 11 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 12 N -0.53 -9.69 4.50 -224.67 -1.01 -10.70 16 13 C 0.06 1.06 5.14 -3.83 -0.02 1.04 16 14 C -0.12 -2.31 6.09 -26.65 -0.16 -2.48 16 15 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 16 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 17 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 18 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 19 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.43 11.37 55.43 0.63 -24.80 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.07 1.44 4.58 -3.84 -0.02 1.43 16 27 C -0.12 -1.55 4.72 -25.59 -0.12 -1.67 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.07 0.71 7.85 -51.92 -0.41 0.30 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.06 0.97 6.17 -51.92 -0.32 0.65 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.25 7.15 -51.92 -0.37 0.88 16 46 H 0.09 1.16 7.10 -51.92 -0.37 0.79 16 47 H 0.08 1.23 6.40 -51.93 -0.33 0.90 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -29.83 362.03 -10.00 -39.83 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.41 Total: -1.04 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.96 Total: -12.91 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.38 Total: -35.50 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.68 Total: -12.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.83 -10.00 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257062042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.531 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds