Wall clock time and date at job start Tue Mar 31 2020 08:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34229 * 116.99958 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99809 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.01743 * 58.60712 * 6 4 3 8 8 C 1.54263 * 110.03321 * 297.16062 * 6 4 3 9 9 C 1.54890 * 104.19711 * 217.10865 * 8 6 4 10 10 C 1.54887 * 102.75012 * 37.94189 * 9 8 6 11 11 H 1.09001 * 110.48667 * 80.73332 * 10 9 8 12 12 N 1.46894 * 110.48717 * 203.37944 * 10 9 8 13 13 C 1.46851 * 110.99955 * 165.56490 * 12 10 9 14 14 C 1.53040 * 109.52365 * 185.84226 * 13 12 10 15 15 C 1.53118 * 109.27581 * 300.81865 * 14 13 12 16 16 C 1.53121 * 109.16278 * 57.65537 * 15 14 13 17 17 H 1.09008 * 109.53470 * 62.29960 * 16 15 14 18 18 C 1.50697 * 109.50550 * 182.40419 * 16 15 14 19 19 H 1.08002 * 119.99625 * 119.80357 * 18 16 15 20 20 C 1.37872 * 119.99996 * 299.80170 * 18 16 15 21 21 N 1.31523 * 119.99899 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00233 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47157 * 59.99762 * 22 20 18 24 24 H 1.48501 * 109.47261 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47068 * 300.00029 * 22 20 18 26 26 C 1.46842 * 111.00438 * 289.77423 * 12 10 9 27 27 C 1.53872 * 110.02946 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47002 * 60.00200 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00466 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99242 * 2 1 3 32 32 H 1.09000 * 109.47050 * 239.99534 * 2 1 3 33 33 H 1.09010 * 110.48465 * 335.78789 * 8 6 4 34 34 H 1.09000 * 110.48918 * 98.42642 * 8 6 4 35 35 H 1.08998 * 110.75581 * 279.62707 * 9 8 6 36 36 H 1.09006 * 110.75555 * 156.25417 * 9 8 6 37 37 H 1.09009 * 109.45995 * 305.85421 * 13 12 10 38 38 H 1.08998 * 109.46337 * 65.82221 * 13 12 10 39 39 H 1.08991 * 109.50284 * 180.87873 * 14 13 12 40 40 H 1.08998 * 109.50095 * 60.76037 * 14 13 12 41 41 H 1.08997 * 109.52702 * 297.74940 * 15 14 13 42 42 H 1.08993 * 109.52440 * 177.55817 * 15 14 13 43 43 H 0.96999 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.45994 * 294.18173 * 26 12 10 45 45 H 1.09008 * 109.45912 * 54.14042 * 26 12 10 46 46 H 1.09007 * 110.03119 * 238.57036 * 27 6 4 47 47 H 1.09004 * 110.03374 * 359.94406 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.5708 3.4863 0.8730 8 6 3.5110 3.6782 -1.2907 9 6 4.7580 4.5206 -1.6575 10 6 5.9289 3.5752 -1.2914 11 1 6.0932 2.8463 -2.0851 12 7 7.1530 4.3469 -1.0388 13 6 8.1661 3.5220 -0.3681 14 6 9.3669 4.3928 0.0088 15 6 9.9519 5.0229 -1.2582 16 6 8.8635 5.8369 -1.9633 17 1 8.5344 6.6467 -1.3120 18 6 9.4146 6.4123 -3.2424 19 1 8.9642 6.1533 -4.1892 20 6 10.4939 7.2694 -3.2040 21 7 11.0420 7.5853 -2.0509 22 14 11.1767 7.9833 -4.7894 23 1 10.1189 8.7688 -5.4745 24 1 12.3280 8.8681 -4.4784 25 1 11.6263 6.8799 -5.6759 26 6 7.6773 4.9244 -2.2830 27 6 5.4581 2.8718 -0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.2848 2.9659 -2.0843 34 1 2.6547 4.3260 -1.1028 35 1 4.7970 5.4325 -1.0617 36 1 4.7676 4.7529 -2.7225 37 1 7.7385 3.0832 0.5334 38 1 8.4904 2.7273 -1.0400 39 1 10.1252 3.7772 0.4925 40 1 9.0459 5.1794 0.6916 41 1 10.3085 4.2374 -1.9245 42 1 10.7805 5.6782 -0.9899 43 1 11.8016 8.1880 -2.0239 44 1 8.0038 4.1231 -2.9459 45 1 6.8945 5.5041 -2.7723 46 1 5.8539 3.3899 0.8726 47 1 5.7876 1.8328 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257062042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:46 Heat of formation + Delta-G solvation = -122.354066 kcal Electronic energy + Delta-G solvation = -24550.892297 eV Core-core repulsion = 21117.807709 eV Total energy + Delta-G solvation = -3433.084588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81831 -40.27616 -38.27253 -37.39943 -35.17105 -33.23624 -32.50607 -31.83184 -29.96877 -28.72889 -26.84363 -25.00924 -24.09313 -23.41869 -22.60587 -21.32980 -20.51554 -20.27334 -18.91189 -18.41498 -17.64959 -17.55121 -17.14734 -16.53393 -15.82156 -15.56637 -15.22707 -14.95957 -14.71330 -14.65509 -14.41128 -14.10632 -13.94357 -13.73110 -13.50844 -13.04573 -12.88736 -12.83603 -12.72899 -12.65465 -12.48118 -12.43841 -12.25412 -11.93703 -11.80750 -11.75638 -11.68988 -11.64538 -11.52813 -11.32911 -11.27196 -10.80172 -10.62170 -10.35323 -9.13794 -8.06596 -6.20519 1.13651 1.41992 1.43190 1.50783 1.65644 2.43552 3.03094 3.20196 3.47655 3.49782 3.74569 4.00337 4.08570 4.17145 4.23564 4.25433 4.33188 4.38703 4.38943 4.45482 4.49104 4.58182 4.63346 4.70379 4.77602 4.85318 4.91028 4.93240 4.97150 4.98350 5.07080 5.09164 5.15013 5.18273 5.20380 5.25521 5.39196 5.41414 5.47530 5.55078 5.64702 5.98740 6.13829 6.22340 6.41158 6.47848 6.70457 6.91843 7.47007 8.97874 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.034475 B = 0.002929 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.993257 B = 9555.785097 C =10041.599971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.471 3.529 5 O -0.540 6.540 6 C -0.078 4.078 7 H 0.138 0.862 8 C -0.097 4.097 9 C -0.111 4.111 10 C 0.074 3.926 11 H 0.028 0.972 12 N -0.532 5.532 13 C 0.062 3.938 14 C -0.109 4.109 15 C -0.105 4.105 16 C 0.054 3.946 17 H 0.001 0.999 18 C -0.537 4.537 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.915 5.915 22 Si 0.953 3.047 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.083 3.917 27 C -0.110 4.110 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.016 0.984 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.006 0.994 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.254 -12.196 5.724 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.315 3.685 5 O -0.430 6.430 6 C -0.097 4.097 7 H 0.156 0.844 8 C -0.135 4.135 9 C -0.149 4.149 10 C -0.034 4.034 11 H 0.046 0.954 12 N -0.257 5.257 13 C -0.065 4.065 14 C -0.147 4.147 15 C -0.143 4.143 16 C 0.036 3.964 17 H 0.019 0.981 18 C -0.575 4.575 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.554 5.554 22 Si 0.779 3.221 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.044 4.044 27 C -0.147 4.147 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.054 -12.030 6.114 24.172 hybrid contribution 1.273 -0.441 -1.461 1.987 sum -18.781 -12.472 4.653 23.020 Atomic orbital electron populations 1.21818 0.90290 1.04313 1.03832 1.23293 0.97198 0.79416 1.02367 1.86523 1.23741 1.33460 1.83503 1.24061 0.80629 0.93027 0.70737 1.90634 1.61093 1.44257 1.47049 1.21727 0.95386 0.88991 1.03617 0.84414 1.22244 0.98631 0.98335 0.94251 1.22519 0.92346 0.98463 1.01523 1.22554 0.90608 0.94017 0.96235 0.95353 1.62122 1.05061 1.34227 1.24242 1.22083 0.92337 0.93722 0.98400 1.21578 0.96546 0.98711 0.97867 1.21476 1.00408 0.97323 0.95130 1.18570 0.90995 0.92537 0.94343 0.98103 1.21489 1.14860 1.27531 0.93632 0.93198 1.25710 0.97024 0.96669 0.99066 1.70029 1.23731 1.35776 1.25864 0.85695 0.77931 0.78351 0.80158 1.19501 1.20913 1.19931 1.21968 0.97152 0.96118 0.89187 1.22274 0.92633 1.01371 0.98462 0.91233 0.88370 0.91064 0.91396 0.91729 0.91521 0.87554 0.89936 0.91539 0.89147 0.96581 0.91506 0.92617 0.96408 0.92301 0.93069 0.97620 0.91924 0.89080 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 71.98 0.74 -0.59 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -6.90 10.20 -51.41 -0.52 -7.42 16 4 C 0.47 10.71 7.10 71.24 0.51 11.22 16 5 O -0.54 -15.74 14.96 21.96 0.33 -15.41 16 6 C -0.08 -1.53 3.41 -10.82 -0.04 -1.57 16 7 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 8 C -0.10 -1.77 6.34 31.67 0.20 -1.57 16 9 C -0.11 -2.70 5.69 31.88 0.18 -2.52 16 10 C 0.07 2.18 2.60 46.01 0.12 2.30 16 11 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 12 N -0.53 -19.25 4.50 -864.73 -3.89 -23.14 16 13 C 0.06 2.18 5.14 86.33 0.44 2.63 16 14 C -0.11 -4.31 6.09 30.65 0.19 -4.12 16 15 C -0.11 -5.18 5.03 30.67 0.15 -5.03 16 16 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 17 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 18 C -0.54 -30.21 8.56 25.60 0.22 -29.99 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 20 C 0.01 0.79 5.30 84.65 0.45 1.24 16 21 N -0.91 -53.66 11.37 21.45 0.24 -53.42 16 22 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 26 C 0.08 3.60 4.58 86.33 0.40 3.99 16 27 C -0.11 -2.72 4.72 31.33 0.15 -2.57 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.07 1.25 7.85 -2.38 -0.02 1.23 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.07 1.67 7.87 -2.38 -0.02 1.65 16 37 H 0.09 2.68 6.17 -2.38 -0.01 2.67 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 3.26 6.16 -2.39 -0.01 3.24 16 43 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.06 2.63 7.15 -2.38 -0.02 2.61 16 46 H 0.09 2.20 7.10 -2.38 -0.02 2.18 16 47 H 0.07 2.01 6.40 -2.38 -0.02 2.00 16 Total: -1.00 -65.76 362.03 3.23 -62.53 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.92 Total: 13.20 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.13 Total: -22.56 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.65 Total: -76.56 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.20 Total: -22.83 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.76 3.23 -62.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257062042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.821 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds