Wall clock time and date at job start Tue Mar 31 2020 08:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45198 * 109.46998 * 2 1 4 4 C 1.34234 * 116.99860 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99566 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00073 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.01772 * 59.93481 * 6 4 3 8 8 C 1.54276 * 110.03166 * 298.54786 * 6 4 3 9 9 C 1.54893 * 104.30985 * 217.03815 * 8 6 4 10 10 C 1.55237 * 102.58887 * 37.93314 * 9 8 6 11 11 H 1.08997 * 110.47569 * 80.77327 * 10 9 8 12 12 N 1.46901 * 110.58138 * 203.34118 * 10 9 8 13 13 C 1.46848 * 110.99464 * 294.42403 * 12 10 9 14 14 C 1.53038 * 109.52074 * 174.16294 * 13 12 10 15 15 C 1.53110 * 109.28168 * 59.17928 * 14 13 12 16 16 C 1.53126 * 109.16245 * 302.34514 * 15 14 13 17 17 H 1.09004 * 109.49850 * 297.71827 * 16 15 14 18 18 C 1.50693 * 109.53873 * 177.61306 * 16 15 14 19 19 H 1.07997 * 120.00271 * 245.61025 * 18 16 15 20 20 C 1.37878 * 119.99646 * 65.61408 * 18 16 15 21 21 N 1.31512 * 120.00462 * 5.18189 * 20 18 16 22 22 Si 1.86809 * 119.99833 * 185.18095 * 20 18 16 23 23 H 1.48490 * 109.47106 * 84.99763 * 22 20 18 24 24 H 1.48493 * 109.46984 * 205.00288 * 22 20 18 25 25 H 1.48502 * 109.46995 * 324.99984 * 22 20 18 26 26 C 1.46846 * 111.00077 * 170.21735 * 12 10 9 27 27 C 1.53870 * 110.03542 * 181.37954 * 6 4 3 28 28 H 1.09004 * 109.46823 * 60.00132 * 1 2 3 29 29 H 1.08997 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46962 * 300.00375 * 1 2 3 31 31 H 1.09003 * 109.46962 * 239.99625 * 2 1 3 32 32 H 1.09004 * 109.46823 * 119.99868 * 2 1 3 33 33 H 1.09000 * 110.48524 * 335.78019 * 8 6 4 34 34 H 1.08994 * 110.48655 * 98.29183 * 8 6 4 35 35 H 1.08999 * 110.75627 * 156.31966 * 9 8 6 36 36 H 1.08995 * 110.75653 * 279.69174 * 9 8 6 37 37 H 1.08998 * 109.46685 * 294.17564 * 13 12 10 38 38 H 1.08999 * 109.46246 * 54.14626 * 13 12 10 39 39 H 1.09001 * 109.50207 * 299.23640 * 14 13 12 40 40 H 1.09004 * 109.53370 * 179.14007 * 14 13 12 41 41 H 1.09001 * 109.52657 * 182.44023 * 15 14 13 42 42 H 1.09002 * 109.58103 * 62.28057 * 15 14 13 43 43 H 0.96999 * 120.00553 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.46015 * 305.84921 * 26 12 10 45 45 H 1.09000 * 109.46466 * 65.82181 * 26 12 10 46 46 H 1.08995 * 110.03402 * 238.57312 * 27 6 4 47 47 H 1.08999 * 110.02832 * 359.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.5896 3.4785 0.8852 8 6 3.4823 3.6901 -1.2744 9 6 4.7187 4.5384 -1.6626 10 6 5.8996 3.5873 -1.3300 11 1 6.0462 2.8659 -2.1338 12 7 7.1309 4.3542 -1.0984 13 6 7.5677 5.0315 -2.3259 14 6 8.7643 5.9333 -2.0144 15 6 9.9035 5.0831 -1.4454 16 6 9.4080 4.3507 -0.1952 17 1 9.1255 5.0789 0.5651 18 6 10.5048 3.4658 0.3384 19 1 10.3853 2.3925 0.3292 20 6 11.6610 4.0265 0.8384 21 7 11.7658 5.3331 0.9442 22 14 13.0786 2.9300 1.3656 23 1 13.9171 2.6029 0.1845 24 1 13.9030 3.6389 2.3769 25 1 12.5424 1.6766 1.9544 26 6 8.1927 3.4948 -0.5596 27 6 5.4577 2.8721 -0.0365 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2384 2.9852 -2.0693 34 1 2.6291 4.3342 -1.0620 35 1 4.7025 4.7812 -2.7251 36 1 4.7704 5.4445 -1.0590 37 1 7.8572 4.2875 -3.0680 38 1 6.7497 5.6360 -2.7179 39 1 8.4717 6.6863 -1.2827 40 1 9.0983 6.4244 -2.9284 41 1 10.7422 5.7273 -1.1816 42 1 10.2237 4.3553 -2.1910 43 1 12.5793 5.7276 1.2956 44 1 7.8287 2.9831 0.3314 45 1 8.4793 2.7579 -1.3099 46 1 5.8732 3.3819 0.8327 47 1 5.7870 1.8331 -0.0527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257062044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:53 Heat of formation + Delta-G solvation = -107.952750 kcal Electronic energy + Delta-G solvation = -24628.463726 eV Core-core repulsion = 21196.003626 eV Total energy + Delta-G solvation = -3432.460100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81018 -38.91456 -37.07196 -36.23304 -33.29675 -32.06647 -31.41141 -30.09509 -28.83221 -27.45423 -24.88757 -24.02066 -22.81679 -22.05915 -21.34755 -20.14568 -19.30195 -18.61645 -17.89985 -16.78863 -16.59698 -16.44503 -15.63850 -14.81736 -14.52361 -14.33799 -13.95163 -13.75509 -13.48424 -13.25760 -13.12860 -12.91181 -12.47394 -12.31838 -12.25000 -12.01335 -11.94696 -11.64680 -11.32573 -11.21014 -10.93388 -10.87506 -10.84607 -10.75176 -10.64289 -10.57439 -10.51657 -10.28563 -10.06150 -9.83348 -9.39257 -8.92235 -8.67910 -8.26979 -7.62076 -5.95326 -3.98311 2.13579 2.51675 3.34463 3.40676 3.43910 4.29200 4.45925 4.48999 4.59787 4.62322 4.64930 4.71895 4.97721 5.16121 5.30188 5.36786 5.42764 5.45461 5.46725 5.51603 5.60541 5.64442 5.66543 5.77665 5.84388 5.86563 6.02867 6.09942 6.23841 6.24782 6.29861 6.35737 6.45636 6.50233 6.57570 6.73329 6.77796 7.01635 7.23923 7.39786 7.67168 7.71154 7.80119 7.88483 8.08031 8.16956 8.53134 9.06636 9.65254 11.13301 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.003397 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.870261 B = 8241.433015 C = 9337.320271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.504 6.504 6 C -0.082 4.082 7 H 0.112 0.888 8 C -0.108 4.108 9 C -0.114 4.114 10 C 0.080 3.920 11 H 0.039 0.961 12 N -0.530 5.530 13 C 0.063 3.937 14 C -0.117 4.117 15 C -0.107 4.107 16 C 0.055 3.945 17 H 0.040 0.960 18 C -0.515 4.515 19 H 0.053 0.947 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.065 3.935 27 C -0.115 4.115 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.016 0.984 46 H 0.091 0.909 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.088 -3.843 -4.600 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.102 4.102 7 H 0.130 0.870 8 C -0.146 4.146 9 C -0.152 4.152 10 C -0.029 4.029 11 H 0.057 0.943 12 N -0.254 5.254 13 C -0.065 4.065 14 C -0.154 4.154 15 C -0.145 4.145 16 C 0.036 3.964 17 H 0.058 0.942 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.715 3.285 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.062 4.062 27 C -0.153 4.153 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.109 0.891 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.860 -3.675 -4.186 21.591 hybrid contribution 1.072 -1.486 -0.328 1.861 sum -19.788 -5.161 -4.513 20.942 Atomic orbital electron populations 1.21801 0.92673 1.02890 1.03506 1.23017 0.95318 0.80542 1.02603 1.86519 1.24801 1.32083 1.84160 1.23885 0.80279 0.93097 0.71826 1.90658 1.60242 1.43114 1.45065 1.21727 0.97253 0.89147 1.02054 0.87015 1.22271 0.98803 0.98424 0.95087 1.22628 0.92678 0.98742 1.01169 1.22471 0.91022 0.93739 0.95666 0.94299 1.62143 1.04141 1.30761 1.28395 1.22005 0.97416 0.96629 0.90401 1.21654 0.95847 0.98311 0.99625 1.21604 0.97098 0.98083 0.97717 1.18666 0.89999 0.94204 0.93557 0.94191 1.21133 1.01056 0.92888 1.40279 0.92910 1.24925 0.98457 0.94874 0.95458 1.69945 1.27211 1.09517 1.46006 0.86691 0.82674 0.80822 0.78298 1.20731 1.21333 1.20003 1.22354 0.91910 0.94449 0.97470 1.22337 0.90465 1.02826 0.99667 0.91487 0.90335 0.91467 0.91327 0.91269 0.91521 0.90309 0.91532 0.89767 0.96077 0.92242 0.91969 0.93608 0.90590 0.95066 0.93097 0.91809 0.96553 0.89058 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.03 10.19 -39.27 -0.40 -4.43 16 4 C 0.47 6.08 7.11 36.00 0.26 6.33 16 5 O -0.50 -8.13 14.96 -18.75 -0.28 -8.41 16 6 C -0.08 -0.96 3.41 -90.65 -0.31 -1.27 16 7 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 8 C -0.11 -1.10 6.32 -25.06 -0.16 -1.25 16 9 C -0.11 -1.35 5.52 -24.55 -0.14 -1.49 16 10 C 0.08 1.21 2.58 -65.86 -0.17 1.04 16 11 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 12 N -0.53 -9.65 4.49 -224.48 -1.01 -10.65 16 13 C 0.06 1.10 5.34 -3.83 -0.02 1.08 16 14 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 15 C -0.11 -2.52 5.09 -26.61 -0.14 -2.66 16 16 C 0.05 1.37 2.13 -91.69 -0.20 1.18 16 17 H 0.04 1.12 8.12 -51.93 -0.42 0.70 16 18 C -0.51 -14.32 8.49 -34.44 -0.29 -14.61 16 19 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 20 C 0.06 1.80 5.28 -17.82 -0.09 1.71 16 21 N -0.89 -25.72 11.99 55.43 0.66 -25.06 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.06 1.40 4.43 -3.83 -0.02 1.38 16 27 C -0.12 -1.69 4.73 -25.61 -0.12 -1.81 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.89 6.95 -51.93 -0.36 0.53 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.99 6.81 -51.93 -0.35 1.64 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.06 1.37 6.44 -51.93 -0.33 1.04 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 1.42 7.41 -51.93 -0.38 1.04 16 47 H 0.09 1.43 6.40 -51.93 -0.33 1.10 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -30.33 363.34 -9.98 -40.30 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.46 Total: -1.24 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.94 Total: -12.56 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.34 Total: -35.71 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.68 Total: -12.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.33 -9.98 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257062044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.651 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds