Wall clock time and date at job start Tue Mar 31 2020 08:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45198 * 109.46998 * 2 1 4 4 C 1.34234 * 116.99860 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99566 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00073 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.01772 * 59.93481 * 6 4 3 8 8 C 1.54276 * 110.03166 * 298.54786 * 6 4 3 9 9 C 1.54893 * 104.30985 * 217.03815 * 8 6 4 10 10 C 1.55237 * 102.58887 * 37.93314 * 9 8 6 11 11 H 1.08997 * 110.47569 * 80.77327 * 10 9 8 12 12 N 1.46901 * 110.58138 * 203.34118 * 10 9 8 13 13 C 1.46848 * 110.99464 * 294.42403 * 12 10 9 14 14 C 1.53038 * 109.52074 * 174.16294 * 13 12 10 15 15 C 1.53110 * 109.28168 * 59.17928 * 14 13 12 16 16 C 1.53126 * 109.16245 * 302.34514 * 15 14 13 17 17 H 1.09004 * 109.49850 * 297.71827 * 16 15 14 18 18 C 1.50693 * 109.53873 * 177.61306 * 16 15 14 19 19 H 1.07997 * 120.00271 * 245.61025 * 18 16 15 20 20 C 1.37878 * 119.99646 * 65.61408 * 18 16 15 21 21 N 1.31512 * 120.00462 * 5.18189 * 20 18 16 22 22 Si 1.86809 * 119.99833 * 185.18095 * 20 18 16 23 23 H 1.48490 * 109.47106 * 84.99763 * 22 20 18 24 24 H 1.48493 * 109.46984 * 205.00288 * 22 20 18 25 25 H 1.48502 * 109.46995 * 324.99984 * 22 20 18 26 26 C 1.46846 * 111.00077 * 170.21735 * 12 10 9 27 27 C 1.53870 * 110.03542 * 181.37954 * 6 4 3 28 28 H 1.09004 * 109.46823 * 60.00132 * 1 2 3 29 29 H 1.08997 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46962 * 300.00375 * 1 2 3 31 31 H 1.09003 * 109.46962 * 239.99625 * 2 1 3 32 32 H 1.09004 * 109.46823 * 119.99868 * 2 1 3 33 33 H 1.09000 * 110.48524 * 335.78019 * 8 6 4 34 34 H 1.08994 * 110.48655 * 98.29183 * 8 6 4 35 35 H 1.08999 * 110.75627 * 156.31966 * 9 8 6 36 36 H 1.08995 * 110.75653 * 279.69174 * 9 8 6 37 37 H 1.08998 * 109.46685 * 294.17564 * 13 12 10 38 38 H 1.08999 * 109.46246 * 54.14626 * 13 12 10 39 39 H 1.09001 * 109.50207 * 299.23640 * 14 13 12 40 40 H 1.09004 * 109.53370 * 179.14007 * 14 13 12 41 41 H 1.09001 * 109.52657 * 182.44023 * 15 14 13 42 42 H 1.09002 * 109.58103 * 62.28057 * 15 14 13 43 43 H 0.96999 * 120.00553 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.46015 * 305.84921 * 26 12 10 45 45 H 1.09000 * 109.46466 * 65.82181 * 26 12 10 46 46 H 1.08995 * 110.03402 * 238.57312 * 27 6 4 47 47 H 1.08999 * 110.02832 * 359.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.5896 3.4785 0.8852 8 6 3.4823 3.6901 -1.2744 9 6 4.7187 4.5384 -1.6626 10 6 5.8996 3.5873 -1.3300 11 1 6.0462 2.8659 -2.1338 12 7 7.1309 4.3542 -1.0984 13 6 7.5677 5.0315 -2.3259 14 6 8.7643 5.9333 -2.0144 15 6 9.9035 5.0831 -1.4454 16 6 9.4080 4.3507 -0.1952 17 1 9.1255 5.0789 0.5651 18 6 10.5048 3.4658 0.3384 19 1 10.3853 2.3925 0.3292 20 6 11.6610 4.0265 0.8384 21 7 11.7658 5.3331 0.9442 22 14 13.0786 2.9300 1.3656 23 1 13.9171 2.6029 0.1845 24 1 13.9030 3.6389 2.3769 25 1 12.5424 1.6766 1.9544 26 6 8.1927 3.4948 -0.5596 27 6 5.4577 2.8721 -0.0365 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2384 2.9852 -2.0693 34 1 2.6291 4.3342 -1.0620 35 1 4.7025 4.7812 -2.7251 36 1 4.7704 5.4445 -1.0590 37 1 7.8572 4.2875 -3.0680 38 1 6.7497 5.6360 -2.7179 39 1 8.4717 6.6863 -1.2827 40 1 9.0983 6.4244 -2.9284 41 1 10.7422 5.7273 -1.1816 42 1 10.2237 4.3553 -2.1910 43 1 12.5793 5.7276 1.2956 44 1 7.8287 2.9831 0.3314 45 1 8.4793 2.7579 -1.3099 46 1 5.8732 3.3819 0.8327 47 1 5.7870 1.8331 -0.0527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257062044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:52 Heat of formation + Delta-G solvation = -124.751466 kcal Electronic energy + Delta-G solvation = -24629.192173 eV Core-core repulsion = 21196.003626 eV Total energy + Delta-G solvation = -3433.188547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.82592 -40.26207 -38.26475 -37.41194 -35.16023 -33.27638 -32.52312 -31.83175 -29.97325 -28.67458 -26.88309 -25.09120 -24.04814 -23.32623 -22.71620 -21.26236 -20.55500 -20.28718 -18.91821 -18.44231 -17.67820 -17.55855 -17.17075 -16.48167 -15.83227 -15.56334 -15.20108 -14.95078 -14.74257 -14.65846 -14.44269 -14.08850 -13.94267 -13.80644 -13.54721 -13.00366 -12.88189 -12.77610 -12.75847 -12.65695 -12.56336 -12.44341 -12.23658 -11.94797 -11.89204 -11.77556 -11.65807 -11.63316 -11.53960 -11.37579 -11.24358 -10.74211 -10.65878 -10.40207 -9.12921 -8.11874 -6.22325 1.12727 1.39228 1.39527 1.49441 1.64011 2.41636 3.03555 3.17718 3.46477 3.51876 3.74483 3.99101 4.08019 4.17298 4.24951 4.27137 4.30695 4.35278 4.40196 4.46941 4.49848 4.56659 4.63754 4.70614 4.80277 4.86315 4.89128 4.92731 4.97360 4.99462 5.08612 5.09100 5.15018 5.16091 5.22819 5.25060 5.40396 5.42237 5.45816 5.51242 5.62685 5.96466 6.08077 6.18050 6.42533 6.47612 6.69741 6.90641 7.44645 8.95948 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.003397 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.870261 B = 8241.433015 C = 9337.320271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.469 3.531 5 O -0.543 6.543 6 C -0.078 4.078 7 H 0.134 0.866 8 C -0.097 4.097 9 C -0.105 4.105 10 C 0.075 3.925 11 H 0.031 0.969 12 N -0.534 5.534 13 C 0.066 3.934 14 C -0.109 4.109 15 C -0.101 4.101 16 C 0.054 3.946 17 H 0.004 0.996 18 C -0.538 4.538 19 H 0.045 0.955 20 C 0.017 3.983 21 N -0.915 5.915 22 Si 0.950 3.050 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.271 1.271 26 C 0.081 3.919 27 C -0.114 4.114 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.020 0.980 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.055 0.945 45 H 0.004 0.996 46 H 0.076 0.924 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.433 -3.513 -5.607 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.433 6.433 6 C -0.097 4.097 7 H 0.152 0.848 8 C -0.135 4.135 9 C -0.142 4.142 10 C -0.033 4.033 11 H 0.049 0.951 12 N -0.258 5.258 13 C -0.062 4.062 14 C -0.147 4.147 15 C -0.139 4.139 16 C 0.035 3.965 17 H 0.022 0.978 18 C -0.577 4.577 19 H 0.064 0.936 20 C -0.182 4.182 21 N -0.554 5.554 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.047 4.047 27 C -0.152 4.152 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.038 0.962 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.022 0.978 46 H 0.095 0.905 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.240 -3.339 -5.201 24.048 hybrid contribution 1.776 -1.625 0.012 2.407 sum -21.464 -4.964 -5.189 22.633 Atomic orbital electron populations 1.21813 0.90037 1.04331 1.03921 1.23301 0.97344 0.79461 1.02270 1.86516 1.23552 1.33396 1.83539 1.24117 0.80660 0.93095 0.70734 1.90651 1.61214 1.44416 1.47045 1.21732 0.94786 0.88971 1.04238 0.84775 1.22269 0.98952 0.98315 0.93917 1.22600 0.91234 0.98027 1.02365 1.22615 0.90718 0.94454 0.95544 0.95114 1.62110 1.04018 1.30451 1.29246 1.22049 0.97762 0.96535 0.89826 1.21570 0.95023 0.97819 1.00269 1.21430 0.97786 0.97783 0.96918 1.18568 0.90990 0.93636 0.93265 0.97788 1.21495 1.02393 0.92966 1.40839 0.93623 1.25675 1.00819 0.96186 0.95506 1.70064 1.27850 1.10963 1.46539 0.85701 0.79539 0.79111 0.78111 1.20042 1.20643 1.19584 1.21974 0.91803 0.93830 0.97045 1.22221 0.93058 1.00951 0.98998 0.90950 0.88402 0.91103 0.91664 0.91775 0.91253 0.87226 0.89729 0.89495 0.96177 0.88432 0.92667 0.90981 0.93815 0.95821 0.92990 0.92664 0.97797 0.90545 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.34 10.19 -51.46 -0.52 -7.87 16 4 C 0.47 11.82 7.11 71.23 0.51 12.33 16 5 O -0.54 -17.82 14.96 21.97 0.33 -17.49 16 6 C -0.08 -1.69 3.41 -10.82 -0.04 -1.73 16 7 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 8 C -0.10 -1.62 6.32 31.67 0.20 -1.42 16 9 C -0.10 -2.12 5.52 32.01 0.18 -1.94 16 10 C 0.08 2.19 2.58 46.11 0.12 2.31 16 11 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 12 N -0.53 -19.21 4.49 -864.12 -3.88 -23.09 16 13 C 0.07 2.16 5.34 86.33 0.46 2.62 16 14 C -0.11 -4.12 6.09 30.64 0.19 -3.94 16 15 C -0.10 -4.90 5.09 30.67 0.16 -4.74 16 16 C 0.05 2.85 2.13 -11.49 -0.02 2.83 16 17 H 0.00 0.23 8.12 -2.38 -0.02 0.21 16 18 C -0.54 -31.09 8.49 25.60 0.22 -30.87 16 19 H 0.05 2.63 7.75 -2.91 -0.02 2.60 16 20 C 0.02 0.99 5.28 84.66 0.45 1.43 16 21 N -0.92 -54.54 11.99 21.45 0.26 -54.28 16 22 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.08 3.62 4.43 86.33 0.38 4.00 16 27 C -0.11 -3.37 4.73 31.32 0.15 -3.22 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.17 7.85 -2.39 -0.02 1.15 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.46 7.84 -2.39 -0.02 1.44 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 38 H 0.10 2.53 6.95 -2.39 -0.02 2.51 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.04 2.37 6.81 -2.39 -0.02 2.36 16 42 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.05 2.51 6.44 -2.39 -0.02 2.49 16 45 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.08 2.45 7.41 -2.39 -0.02 2.43 16 47 H 0.06 2.10 6.40 -2.39 -0.02 2.09 16 Total: -1.00 -68.68 363.34 3.25 -65.44 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.92 Total: 11.88 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.13 Total: -21.73 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -3.63 Total: -77.37 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.20 Total: -25.36 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.68 3.25 -65.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257062044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.316 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds