Wall clock time and date at job start Tue Mar 31 2020 08:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47047 * 2 1 4 4 C 1.34228 * 116.99949 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99871 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.43850 * 57.45141 * 6 4 3 8 8 C 1.54270 * 110.59162 * 294.83499 * 6 4 3 9 9 C 1.53878 * 106.59263 * 217.65458 * 8 6 4 10 10 C 1.54264 * 106.60324 * 0.02562 * 9 8 6 11 11 H 1.09002 * 110.59216 * 264.87786 * 10 9 8 12 12 N 1.46895 * 110.49137 * 142.28675 * 10 9 8 13 13 C 1.46846 * 111.00031 * 61.35826 * 12 10 9 14 14 C 1.53040 * 109.51450 * 185.84774 * 13 12 10 15 15 C 1.53112 * 109.27804 * 300.80334 * 14 13 12 16 16 C 1.53122 * 109.15091 * 57.67053 * 15 14 13 17 17 H 1.09001 * 109.53587 * 62.30086 * 16 15 14 18 18 C 1.50703 * 109.50193 * 182.39640 * 16 15 14 19 19 H 1.08000 * 119.99598 * 119.80201 * 18 16 15 20 20 C 1.37873 * 120.00311 * 299.80446 * 18 16 15 21 21 N 1.31517 * 119.99990 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00215 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46988 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47517 * 119.99859 * 22 20 18 25 25 H 1.48504 * 109.47305 * 240.00420 * 22 20 18 26 26 C 1.46838 * 111.00411 * 185.57153 * 12 10 9 27 27 C 1.54885 * 110.48469 * 179.97438 * 6 4 3 28 28 H 1.09005 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47239 * 300.00085 * 1 2 3 30 30 H 1.08997 * 109.46886 * 60.00437 * 1 2 3 31 31 H 1.09000 * 109.47619 * 239.99338 * 2 1 3 32 32 H 1.09006 * 109.47116 * 119.99479 * 2 1 3 33 33 H 1.08998 * 110.03456 * 336.94136 * 8 6 4 34 34 H 1.08998 * 110.03091 * 98.37800 * 8 6 4 35 35 H 1.08997 * 110.03166 * 240.71132 * 9 8 6 36 36 H 1.09011 * 110.02891 * 119.28630 * 9 8 6 37 37 H 1.09000 * 109.46210 * 305.85798 * 13 12 10 38 38 H 1.08994 * 109.46393 * 65.83918 * 13 12 10 39 39 H 1.09001 * 109.50456 * 60.75780 * 14 13 12 40 40 H 1.09000 * 109.50393 * 180.87445 * 14 13 12 41 41 H 1.08998 * 109.53477 * 297.76755 * 15 14 13 42 42 H 1.09001 * 109.57883 * 177.59784 * 15 14 13 43 43 H 0.97005 * 119.99826 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.45999 * 294.17574 * 26 12 10 45 45 H 1.08999 * 109.46563 * 54.14859 * 26 12 10 46 46 H 1.09001 * 110.75899 * 38.43633 * 27 6 4 47 47 H 1.08999 * 110.75563 * 275.06498 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5588 3.4987 0.8615 8 6 3.5669 3.6715 -1.3100 9 6 4.7987 4.5121 -1.6891 10 6 5.8582 4.2592 -0.5967 11 1 5.8115 5.0333 0.1692 12 7 7.2021 4.2021 -1.1871 13 6 7.5464 5.4738 -1.8357 14 6 8.8858 5.3309 -2.5622 15 6 9.9693 4.9418 -1.5528 16 6 9.5632 3.6398 -0.8568 17 1 9.4933 2.8392 -1.5932 18 6 10.5958 3.2805 0.1804 19 1 10.3115 3.1970 1.2190 20 6 11.9033 3.0584 -0.1964 21 7 12.2493 3.1596 -1.4612 22 14 13.1830 2.6123 1.0891 23 1 12.5429 2.5621 2.4282 24 1 13.7652 1.2845 0.7682 25 1 14.2584 3.6364 1.0933 26 6 8.2042 3.8313 -0.1799 27 6 5.4686 2.8838 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.3517 2.9484 -2.0967 34 1 2.7057 4.3209 -1.1532 35 1 4.5352 5.5694 -1.7165 36 1 5.1814 4.1970 -2.6600 37 1 6.7699 5.7370 -2.5540 38 1 7.6240 6.2568 -1.0815 39 1 8.8049 4.5574 -3.3259 40 1 9.1487 6.2794 -3.0305 41 1 10.0774 5.7330 -0.8109 42 1 10.9169 4.7971 -2.0717 43 1 13.1693 3.0037 -1.7263 44 1 8.2785 4.6221 0.5666 45 1 7.9056 2.9017 0.3045 46 1 5.8270 2.0728 -0.6341 47 1 5.8516 2.7801 1.0151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257062045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:55 Heat of formation + Delta-G solvation = -107.558818 kcal Electronic energy + Delta-G solvation = -24600.827512 eV Core-core repulsion = 21168.384494 eV Total energy + Delta-G solvation = -3432.443018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73942 -38.94693 -37.04031 -36.24340 -33.32916 -32.04016 -31.36519 -30.10383 -28.83638 -27.48736 -24.91447 -24.00810 -22.78049 -22.09158 -21.30356 -19.83388 -19.68604 -18.61750 -17.69597 -16.87853 -16.65665 -16.08500 -15.67454 -15.16184 -14.50543 -14.21585 -13.91774 -13.79724 -13.38842 -13.25532 -13.08678 -12.92305 -12.51321 -12.36845 -12.23958 -11.98847 -11.93240 -11.69498 -11.32888 -11.19782 -10.95911 -10.89825 -10.84064 -10.70749 -10.61774 -10.58236 -10.46517 -10.28040 -10.02198 -9.78635 -9.40864 -8.95678 -8.63891 -8.26012 -7.62099 -5.93169 -3.98846 2.16376 2.53117 3.32924 3.40893 3.44757 4.29950 4.40959 4.46322 4.53044 4.66016 4.71908 4.87536 4.99524 5.00973 5.35885 5.36899 5.37454 5.44250 5.46415 5.48222 5.56672 5.62856 5.67166 5.78361 5.83226 5.88350 6.05091 6.09878 6.17936 6.28439 6.31343 6.36713 6.42239 6.52602 6.59444 6.76264 6.80741 7.03556 7.26781 7.45801 7.70116 7.72511 7.80568 7.89378 8.14415 8.22493 8.53384 9.05522 9.65269 11.12931 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.003405 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.641301 B = 8221.579730 C = 9301.966005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.468 3.532 5 O -0.500 6.500 6 C -0.087 4.087 7 H 0.109 0.891 8 C -0.105 4.105 9 C -0.117 4.117 10 C 0.080 3.920 11 H 0.042 0.958 12 N -0.530 5.530 13 C 0.063 3.937 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.054 3.946 17 H 0.034 0.966 18 C -0.512 4.512 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.066 3.934 27 C -0.098 4.098 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.258 0.742 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.893 0.896 0.528 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.278 6.278 4 C 0.310 3.690 5 O -0.386 6.386 6 C -0.106 4.106 7 H 0.127 0.873 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.029 4.029 11 H 0.059 0.941 12 N -0.255 5.255 13 C -0.065 4.065 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.052 0.948 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.061 4.061 27 C -0.136 4.136 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.535 0.194 0.053 21.536 hybrid contribution 0.768 0.217 1.387 1.600 sum -20.767 0.411 1.440 20.821 Atomic orbital electron populations 1.21797 0.92717 1.02889 1.03451 1.23013 0.95265 0.80527 1.02665 1.86513 1.24904 1.32134 1.84235 1.23745 0.80280 0.92793 0.72161 1.90698 1.60312 1.43026 1.44558 1.21943 0.97626 0.89507 1.01568 0.87266 1.22024 0.98723 0.98627 0.94895 1.22216 0.93831 0.99147 1.00300 1.22392 0.90156 0.95671 0.94713 0.94052 1.62116 1.00699 1.30952 1.31718 1.22026 0.97833 0.89640 0.97015 1.21671 0.94818 0.99790 0.99222 1.21650 0.98804 0.97835 0.96596 1.18664 0.88618 0.94086 0.95063 0.94767 1.21193 0.93390 1.46689 0.93833 0.92845 1.24932 0.98419 0.95384 0.95154 1.69908 1.17893 1.49850 1.15118 0.86586 0.81677 0.78022 0.81995 1.19868 1.21057 1.21154 1.22330 0.93305 0.98306 0.92115 1.22518 0.89971 0.98810 1.02321 0.90327 0.91543 0.91485 0.91227 0.91291 0.91345 0.90744 0.91795 0.90060 0.92262 0.96047 0.92114 0.93627 0.95252 0.89178 0.93173 0.96465 0.91957 0.88635 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.10 10.22 -39.25 -0.40 -4.50 16 4 C 0.47 6.17 7.12 36.01 0.26 6.43 16 5 O -0.50 -8.26 15.47 -18.75 -0.29 -8.55 16 6 C -0.09 -1.01 3.36 -90.11 -0.30 -1.31 16 7 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.10 -1.08 6.37 -25.61 -0.16 -1.24 16 9 C -0.12 -1.39 5.20 -25.61 -0.13 -1.52 16 10 C 0.08 1.17 2.58 -66.05 -0.17 1.00 16 11 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 12 N -0.53 -9.70 4.48 -224.72 -1.01 -10.71 16 13 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 14 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 15 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 16 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 17 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.70 11.36 55.43 0.63 -25.07 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.07 1.42 4.51 -3.84 -0.02 1.40 16 27 C -0.10 -1.43 4.23 -24.74 -0.10 -1.54 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.06 7.78 -51.92 -0.40 0.66 16 37 H 0.06 0.89 6.83 -51.93 -0.35 0.53 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.34 6.72 -51.93 -0.35 0.99 16 46 H 0.10 1.65 7.47 -51.93 -0.39 1.26 16 47 H 0.07 1.07 7.82 -51.93 -0.41 0.67 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -30.47 363.56 -10.06 -40.52 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.51 Total: -1.27 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.94 Total: -12.47 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.38 Total: -35.78 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.69 Total: -13.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.47 -10.06 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257062045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.036 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds