Wall clock time and date at job start Tue Mar 31 2020 08:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47047 * 2 1 4 4 C 1.34228 * 116.99949 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99871 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.43850 * 57.45141 * 6 4 3 8 8 C 1.54270 * 110.59162 * 294.83499 * 6 4 3 9 9 C 1.53878 * 106.59263 * 217.65458 * 8 6 4 10 10 C 1.54264 * 106.60324 * 0.02562 * 9 8 6 11 11 H 1.09002 * 110.59216 * 264.87786 * 10 9 8 12 12 N 1.46895 * 110.49137 * 142.28675 * 10 9 8 13 13 C 1.46846 * 111.00031 * 61.35826 * 12 10 9 14 14 C 1.53040 * 109.51450 * 185.84774 * 13 12 10 15 15 C 1.53112 * 109.27804 * 300.80334 * 14 13 12 16 16 C 1.53122 * 109.15091 * 57.67053 * 15 14 13 17 17 H 1.09001 * 109.53587 * 62.30086 * 16 15 14 18 18 C 1.50703 * 109.50193 * 182.39640 * 16 15 14 19 19 H 1.08000 * 119.99598 * 119.80201 * 18 16 15 20 20 C 1.37873 * 120.00311 * 299.80446 * 18 16 15 21 21 N 1.31517 * 119.99990 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00215 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46988 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47517 * 119.99859 * 22 20 18 25 25 H 1.48504 * 109.47305 * 240.00420 * 22 20 18 26 26 C 1.46838 * 111.00411 * 185.57153 * 12 10 9 27 27 C 1.54885 * 110.48469 * 179.97438 * 6 4 3 28 28 H 1.09005 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47239 * 300.00085 * 1 2 3 30 30 H 1.08997 * 109.46886 * 60.00437 * 1 2 3 31 31 H 1.09000 * 109.47619 * 239.99338 * 2 1 3 32 32 H 1.09006 * 109.47116 * 119.99479 * 2 1 3 33 33 H 1.08998 * 110.03456 * 336.94136 * 8 6 4 34 34 H 1.08998 * 110.03091 * 98.37800 * 8 6 4 35 35 H 1.08997 * 110.03166 * 240.71132 * 9 8 6 36 36 H 1.09011 * 110.02891 * 119.28630 * 9 8 6 37 37 H 1.09000 * 109.46210 * 305.85798 * 13 12 10 38 38 H 1.08994 * 109.46393 * 65.83918 * 13 12 10 39 39 H 1.09001 * 109.50456 * 60.75780 * 14 13 12 40 40 H 1.09000 * 109.50393 * 180.87445 * 14 13 12 41 41 H 1.08998 * 109.53477 * 297.76755 * 15 14 13 42 42 H 1.09001 * 109.57883 * 177.59784 * 15 14 13 43 43 H 0.97005 * 119.99826 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.45999 * 294.17574 * 26 12 10 45 45 H 1.08999 * 109.46563 * 54.14859 * 26 12 10 46 46 H 1.09001 * 110.75899 * 38.43633 * 27 6 4 47 47 H 1.08999 * 110.75563 * 275.06498 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5588 3.4987 0.8615 8 6 3.5669 3.6715 -1.3100 9 6 4.7987 4.5121 -1.6891 10 6 5.8582 4.2592 -0.5967 11 1 5.8115 5.0333 0.1692 12 7 7.2021 4.2021 -1.1871 13 6 7.5464 5.4738 -1.8357 14 6 8.8858 5.3309 -2.5622 15 6 9.9693 4.9418 -1.5528 16 6 9.5632 3.6398 -0.8568 17 1 9.4933 2.8392 -1.5932 18 6 10.5958 3.2805 0.1804 19 1 10.3115 3.1970 1.2190 20 6 11.9033 3.0584 -0.1964 21 7 12.2493 3.1596 -1.4612 22 14 13.1830 2.6123 1.0891 23 1 12.5429 2.5621 2.4282 24 1 13.7652 1.2845 0.7682 25 1 14.2584 3.6364 1.0933 26 6 8.2042 3.8313 -0.1799 27 6 5.4686 2.8838 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.3517 2.9484 -2.0967 34 1 2.7057 4.3209 -1.1532 35 1 4.5352 5.5694 -1.7165 36 1 5.1814 4.1970 -2.6600 37 1 6.7699 5.7370 -2.5540 38 1 7.6240 6.2568 -1.0815 39 1 8.8049 4.5574 -3.3259 40 1 9.1487 6.2794 -3.0305 41 1 10.0774 5.7330 -0.8109 42 1 10.9169 4.7971 -2.0717 43 1 13.1693 3.0037 -1.7263 44 1 8.2785 4.6221 0.5666 45 1 7.9056 2.9017 0.3045 46 1 5.8270 2.0728 -0.6341 47 1 5.8516 2.7801 1.0151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257062045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:55 Heat of formation + Delta-G solvation = -124.594250 kcal Electronic energy + Delta-G solvation = -24601.566223 eV Core-core repulsion = 21168.384494 eV Total energy + Delta-G solvation = -3433.181730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76527 -40.27852 -38.25315 -37.43070 -35.18402 -33.22364 -32.51925 -31.82774 -29.97759 -28.69617 -26.89890 -25.07210 -24.04102 -23.34929 -22.70818 -20.91620 -20.84650 -20.37393 -18.80554 -18.33753 -17.82652 -17.49663 -16.73484 -16.60450 -16.27351 -15.48382 -15.10550 -14.94096 -14.70530 -14.66874 -14.34415 -14.19166 -13.99794 -13.71186 -13.51456 -13.03639 -12.88503 -12.86730 -12.70685 -12.66090 -12.54756 -12.43558 -12.19929 -11.99940 -11.93823 -11.75369 -11.64392 -11.55824 -11.51932 -11.32682 -11.24546 -10.79284 -10.62501 -10.37403 -9.08200 -8.08781 -6.22833 1.13997 1.38443 1.39938 1.51520 1.64372 2.41728 3.06606 3.17972 3.40265 3.50325 3.90355 3.99615 4.07707 4.10983 4.23365 4.29802 4.32959 4.34993 4.40794 4.44235 4.52062 4.52775 4.64732 4.68631 4.81746 4.85702 4.91411 4.93082 4.93598 4.99587 5.11006 5.12338 5.16089 5.20410 5.23827 5.29199 5.38950 5.42346 5.45531 5.55105 5.63735 5.98290 6.15183 6.23012 6.46484 6.48083 6.71378 6.90366 7.44924 8.96096 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.003405 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.641301 B = 8221.579730 C = 9301.966005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.470 3.530 5 O -0.543 6.543 6 C -0.080 4.080 7 H 0.140 0.860 8 C -0.096 4.096 9 C -0.110 4.110 10 C 0.077 3.923 11 H 0.055 0.945 12 N -0.544 5.544 13 C 0.067 3.933 14 C -0.111 4.111 15 C -0.104 4.104 16 C 0.052 3.948 17 H -0.008 1.008 18 C -0.535 4.535 19 H 0.049 0.951 20 C 0.013 3.987 21 N -0.916 5.916 22 Si 0.954 3.046 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.278 1.278 26 C 0.084 3.916 27 C -0.100 4.100 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.015 0.985 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.456 2.474 0.990 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.271 6.271 4 C 0.314 3.686 5 O -0.433 6.433 6 C -0.099 4.099 7 H 0.158 0.842 8 C -0.134 4.134 9 C -0.148 4.148 10 C -0.031 4.031 11 H 0.073 0.927 12 N -0.269 5.269 13 C -0.060 4.060 14 C -0.149 4.149 15 C -0.142 4.142 16 C 0.033 3.967 17 H 0.010 0.990 18 C -0.574 4.574 19 H 0.067 0.933 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.203 1.203 26 C -0.044 4.044 27 C -0.139 4.139 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.136 1.786 0.512 24.208 hybrid contribution 1.545 -0.343 1.227 2.003 sum -22.591 1.442 1.738 22.704 Atomic orbital electron populations 1.21808 0.89986 1.04332 1.03923 1.23293 0.97366 0.79501 1.02238 1.86511 1.23666 1.33371 1.83590 1.24085 0.80629 0.92956 0.70908 1.90689 1.61366 1.44507 1.46741 1.21960 0.95043 0.89086 1.03792 0.84226 1.22024 0.99153 0.98579 0.93635 1.22192 0.93155 1.01094 0.98336 1.22530 0.88630 0.95771 0.96138 0.92738 1.62031 1.01657 1.32024 1.31151 1.22034 0.97295 0.89135 0.97561 1.21591 0.94881 1.00487 0.97946 1.21452 0.98897 0.96795 0.97055 1.18584 0.90669 0.93461 0.93952 0.99018 1.21559 0.94545 1.47100 0.94198 0.93272 1.25728 1.00434 0.95276 0.97141 1.70051 1.18332 1.50335 1.16805 0.85570 0.79062 0.77801 0.79607 1.19233 1.20712 1.20346 1.21926 0.92348 0.97856 0.92277 1.22412 0.92649 0.97845 1.00947 0.88427 0.91002 0.91000 0.91835 0.91730 0.91879 0.87323 0.89004 0.91296 0.88703 0.95421 0.93389 0.91068 0.95823 0.92571 0.93082 0.96731 0.93032 0.92179 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 10.29 71.98 0.74 -0.74 16 2 C 0.05 0.87 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.51 10.22 -51.39 -0.53 -8.04 16 4 C 0.47 12.07 7.12 71.24 0.51 12.57 16 5 O -0.54 -18.51 15.47 21.97 0.34 -18.17 16 6 C -0.08 -1.68 3.36 -10.46 -0.04 -1.72 16 7 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 8 C -0.10 -1.65 6.37 31.32 0.20 -1.45 16 9 C -0.11 -2.24 5.20 31.32 0.16 -2.08 16 10 C 0.08 2.13 2.58 45.99 0.12 2.25 16 11 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 12 N -0.54 -19.65 4.48 -864.89 -3.88 -23.52 16 13 C 0.07 2.19 5.29 86.33 0.46 2.65 16 14 C -0.11 -4.30 6.09 30.64 0.19 -4.12 16 15 C -0.10 -5.10 5.03 30.67 0.15 -4.95 16 16 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 17 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 18 C -0.54 -30.90 8.56 25.60 0.22 -30.68 16 19 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 20 C 0.01 0.73 5.30 84.65 0.45 1.18 16 21 N -0.92 -54.80 11.36 21.45 0.24 -54.55 16 22 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 C 0.08 3.68 4.51 86.32 0.39 4.07 16 27 C -0.10 -2.92 4.23 31.89 0.13 -2.78 16 28 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 33 H 0.06 1.18 7.83 -2.39 -0.02 1.16 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.61 7.78 -2.38 -0.02 1.59 16 37 H 0.09 2.48 6.83 -2.39 -0.02 2.46 16 38 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 3.13 6.16 -2.39 -0.01 3.11 16 43 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.05 2.33 6.72 -2.39 -0.02 2.32 16 46 H 0.06 2.18 7.47 -2.39 -0.02 2.16 16 47 H 0.06 1.89 7.82 -2.39 -0.02 1.87 16 Total: -1.00 -69.91 363.56 3.23 -66.68 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.92 Total: 12.16 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.10 Total: -21.73 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -3.63 Total: -78.07 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.19 Total: -26.20 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.91 3.23 -66.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257062045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.915 kcal (2) G-P(sol) polarization free energy of solvation -69.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds