Wall clock time and date at job start Tue Mar 31 2020 07:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47215 * 2 1 4 4 C 1.34230 * 117.00269 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99684 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99988 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46942 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47127 * 185.00287 * 7 6 4 9 9 C 1.52999 * 109.46626 * 299.99539 * 8 7 6 10 10 C 1.52997 * 109.47592 * 300.00035 * 9 8 7 11 11 N 1.46905 * 109.47305 * 180.02562 * 10 9 8 12 12 C 1.47473 * 110.99890 * 155.97104 * 11 10 9 13 13 C 1.53509 * 87.93120 * 221.29341 * 12 11 10 14 14 C 1.50704 * 114.34257 * 139.68261 * 13 12 11 15 15 H 1.07996 * 120.00376 * 266.08015 * 14 13 12 16 16 C 1.37877 * 119.99719 * 86.07755 * 14 13 12 17 17 N 1.31514 * 120.00008 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00053 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47321 * 90.00165 * 18 16 14 20 20 H 1.48503 * 109.46700 * 209.99724 * 18 16 14 21 21 H 1.48495 * 109.47039 * 329.99690 * 18 16 14 22 22 C 1.47475 * 110.99876 * 59.99826 * 11 10 9 23 23 C 1.52996 * 109.47165 * 60.00300 * 10 9 8 24 24 C 1.52997 * 109.47232 * 65.00165 * 7 6 4 25 25 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47582 * 300.00103 * 1 2 3 27 27 H 1.08997 * 109.47304 * 60.00532 * 1 2 3 28 28 H 1.08993 * 109.47008 * 239.99464 * 2 1 3 29 29 H 1.09010 * 109.46670 * 119.99538 * 2 1 3 30 30 H 1.08998 * 109.47263 * 60.00324 * 6 4 3 31 31 H 1.08998 * 109.47345 * 300.00182 * 6 4 3 32 32 H 1.09001 * 109.47289 * 305.00240 * 7 6 4 33 33 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 34 34 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 36 36 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47140 * 300.00346 * 10 9 8 38 38 H 1.08998 * 113.47893 * 336.06278 * 12 11 10 39 39 H 1.09000 * 113.47733 * 106.53201 * 12 11 10 40 40 H 1.09001 * 114.17426 * 272.37844 * 13 12 11 41 41 H 0.97002 * 120.00324 * 179.97438 * 17 16 14 42 42 H 1.09004 * 113.47554 * 253.46935 * 22 11 10 43 43 H 1.08998 * 113.48049 * 23.87876 * 22 11 10 44 44 H 1.08992 * 109.47534 * 180.02562 * 23 10 9 45 45 H 1.08996 * 109.47134 * 59.99508 * 23 10 9 46 46 H 1.09000 * 109.47140 * 180.02562 * 24 7 6 47 47 H 1.09001 * 109.47230 * 299.99295 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 6 6.0331 4.2658 0.1254 9 6 5.5672 5.1181 -1.0567 10 6 6.0447 4.4822 -2.3637 11 7 5.5979 5.3009 -3.4987 12 6 6.4627 5.0911 -4.6746 13 6 6.3963 6.6044 -4.9239 14 6 7.7015 7.2203 -5.3578 15 1 8.3639 7.6552 -4.6240 16 6 8.0501 7.2286 -6.6918 17 7 9.1888 7.7665 -7.0706 18 14 6.9042 6.4770 -7.9612 19 1 5.9647 7.5150 -8.4562 20 1 7.7020 5.9494 -9.0972 21 1 6.1352 5.3692 -7.3396 22 6 6.1435 6.6683 -3.4111 23 6 5.4602 3.0738 -2.4890 24 6 5.9261 2.2213 -1.3069 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5844 3.4700 0.8895 31 1 3.5851 3.4690 -0.8904 32 1 5.7805 2.2500 0.8422 33 1 5.6929 4.7188 1.0565 34 1 7.1216 4.2087 0.1259 35 1 4.4787 5.1752 -1.0568 36 1 5.9840 6.1214 -0.9677 37 1 7.1332 4.4251 -2.3636 38 1 7.4616 4.7362 -4.4212 39 1 5.9916 4.5006 -5.4603 40 1 5.5484 6.9199 -5.5319 41 1 9.4343 7.7720 -8.0090 42 1 5.4017 7.4143 -3.1260 43 1 7.0566 6.7344 -2.8196 44 1 5.8007 2.6205 -3.4198 45 1 4.3717 3.1308 -2.4890 46 1 7.0146 2.1639 -1.3066 47 1 5.5098 1.2179 -1.3961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258030206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:39 Heat of formation + Delta-G solvation = -74.514242 kcal Electronic energy + Delta-G solvation = -24590.719912 eV Core-core repulsion = 21159.709814 eV Total energy + Delta-G solvation = -3431.010098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93560 -39.77652 -37.98479 -36.58032 -32.88495 -32.20079 -31.60432 -30.77233 -28.84260 -26.92437 -25.15366 -23.90709 -23.36963 -22.24734 -21.54918 -20.63046 -18.83024 -18.44663 -17.89220 -17.01251 -16.95020 -16.41099 -15.71498 -15.22568 -14.77013 -14.31684 -14.15874 -13.79076 -13.76158 -13.61057 -13.19465 -13.14174 -12.82194 -12.47312 -12.36164 -12.24318 -11.95016 -11.89171 -11.78997 -11.59361 -11.39791 -11.02069 -10.98454 -10.80097 -10.62815 -10.57974 -10.46200 -10.20466 -9.93690 -9.88123 -9.60729 -9.31178 -9.09083 -8.54006 -8.08860 -6.09690 -4.09808 2.05999 2.47216 3.30477 3.38850 3.44084 4.40956 4.43106 4.48500 4.58955 4.65169 4.65875 4.84828 4.92820 4.94539 5.05667 5.17527 5.24735 5.31108 5.38818 5.42618 5.42982 5.55495 5.59051 5.62528 5.64920 5.70371 5.78088 5.93876 6.02789 6.07923 6.13247 6.18739 6.22877 6.25459 6.30483 6.42646 6.52327 6.53413 6.55507 6.61134 6.78489 7.06154 7.38251 7.60382 7.70998 7.93281 8.50040 8.93480 9.53618 11.02887 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.003183 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.525448 B = 8794.590534 C = 9380.766549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.506 6.506 6 C -0.116 4.116 7 C -0.072 4.072 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.050 3.950 11 N -0.481 5.481 12 C -0.008 4.008 13 C -0.001 4.001 14 C -0.510 4.510 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.257 1.257 22 C 0.012 3.988 23 C -0.108 4.108 24 C -0.122 4.122 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -13.101 16.343 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.394 6.394 6 C -0.153 4.153 7 C -0.091 4.091 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.059 4.059 11 N -0.204 5.204 12 C -0.138 4.138 13 C -0.020 4.020 14 C -0.548 4.548 15 H 0.091 0.909 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.181 1.181 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.159 4.159 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.518 -13.521 16.171 25.595 hybrid contribution 0.468 -0.532 -0.651 0.962 sum -14.050 -14.053 15.520 25.215 Atomic orbital electron populations 1.21808 0.92669 1.02925 1.03601 1.23002 0.95365 0.80403 1.02515 1.86526 1.24976 1.32260 1.84103 1.23929 0.80280 0.93172 0.71967 1.90629 1.60167 1.43382 1.45219 1.21693 0.96855 0.90537 1.06238 1.20966 0.91529 0.97196 0.99363 1.21569 1.00973 0.94114 0.98312 1.21633 1.01484 0.98853 0.93393 1.22187 0.97626 0.93874 0.92197 1.68889 1.44578 1.03487 1.03417 1.24328 0.94789 1.01794 0.92843 1.20512 0.97757 0.91467 0.92302 1.20927 1.02264 1.37997 0.93585 0.90885 1.25019 0.94991 0.94394 0.98537 1.69913 1.22366 1.44693 1.16769 0.86862 0.81180 0.80490 0.81115 1.20324 1.21567 1.18146 1.23710 0.97387 0.90805 0.99813 1.21503 1.00726 0.94459 0.97849 1.21709 1.01167 0.99610 0.93451 0.90307 0.91513 0.91349 0.91237 0.91378 0.87876 0.86606 0.90541 0.91769 0.91338 0.91332 0.91616 0.93587 0.91942 0.92071 0.92728 0.92633 0.91794 0.92210 0.92128 0.91808 0.91842 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.84 10.22 -39.26 -0.40 -4.24 16 4 C 0.46 5.27 7.68 36.00 0.28 5.55 16 5 O -0.51 -6.89 13.72 -18.75 -0.26 -7.15 16 6 C -0.12 -1.12 4.58 -27.89 -0.13 -1.25 16 7 C -0.07 -0.76 2.31 -90.62 -0.21 -0.97 16 8 C -0.11 -1.16 5.45 -26.73 -0.15 -1.30 16 9 C -0.12 -1.47 4.83 -26.73 -0.13 -1.60 16 10 C 0.05 0.78 1.60 -67.71 -0.11 0.67 16 11 N -0.48 -8.94 6.15 -236.63 -1.45 -10.39 16 12 C -0.01 -0.18 6.48 -7.56 -0.05 -0.23 16 13 C 0.00 -0.02 2.95 -91.24 -0.27 -0.29 16 14 C -0.51 -14.08 9.38 -34.44 -0.32 -14.40 16 15 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 18 Si 0.88 21.33 27.14 -169.99 -4.61 16.72 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -5.97 5.68 56.52 0.32 -5.65 16 22 C 0.01 0.23 6.01 -7.56 -0.05 0.18 16 23 C -0.11 -1.51 5.15 -26.73 -0.14 -1.65 16 24 C -0.12 -1.51 5.19 -26.73 -0.14 -1.64 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.07 0.55 8.13 -51.92 -0.42 0.13 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 1.17 4.82 -51.93 -0.25 0.92 16 32 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.83 6.54 -51.93 -0.34 0.49 16 36 H 0.07 0.88 7.03 -51.93 -0.36 0.51 16 37 H 0.05 0.78 7.52 -51.93 -0.39 0.39 16 38 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16 39 H 0.06 1.31 7.11 -51.93 -0.37 0.94 16 40 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.20 7.61 -51.93 -0.40 0.80 16 44 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 45 H 0.06 0.88 6.32 -51.93 -0.33 0.55 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 1.02 5.96 -51.93 -0.31 0.71 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -30.66 355.85 -9.68 -40.34 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -8.20 Total: 0.58 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.89 Total: -14.75 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.68 Total: -36.86 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.66 Total: -11.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.61 Total: 16.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.66 -9.68 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258030206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.173 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds