Wall clock time and date at job start Tue Mar 31 2020 07:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47215 * 2 1 4 4 C 1.34230 * 117.00269 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99684 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99988 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46942 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47127 * 185.00287 * 7 6 4 9 9 C 1.52999 * 109.46626 * 299.99539 * 8 7 6 10 10 C 1.52997 * 109.47592 * 300.00035 * 9 8 7 11 11 N 1.46905 * 109.47305 * 180.02562 * 10 9 8 12 12 C 1.47473 * 110.99890 * 155.97104 * 11 10 9 13 13 C 1.53509 * 87.93120 * 221.29341 * 12 11 10 14 14 C 1.50704 * 114.34257 * 139.68261 * 13 12 11 15 15 H 1.07996 * 120.00376 * 266.08015 * 14 13 12 16 16 C 1.37877 * 119.99719 * 86.07755 * 14 13 12 17 17 N 1.31514 * 120.00008 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00053 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47321 * 90.00165 * 18 16 14 20 20 H 1.48503 * 109.46700 * 209.99724 * 18 16 14 21 21 H 1.48495 * 109.47039 * 329.99690 * 18 16 14 22 22 C 1.47475 * 110.99876 * 59.99826 * 11 10 9 23 23 C 1.52996 * 109.47165 * 60.00300 * 10 9 8 24 24 C 1.52997 * 109.47232 * 65.00165 * 7 6 4 25 25 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47582 * 300.00103 * 1 2 3 27 27 H 1.08997 * 109.47304 * 60.00532 * 1 2 3 28 28 H 1.08993 * 109.47008 * 239.99464 * 2 1 3 29 29 H 1.09010 * 109.46670 * 119.99538 * 2 1 3 30 30 H 1.08998 * 109.47263 * 60.00324 * 6 4 3 31 31 H 1.08998 * 109.47345 * 300.00182 * 6 4 3 32 32 H 1.09001 * 109.47289 * 305.00240 * 7 6 4 33 33 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 34 34 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 36 36 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47140 * 300.00346 * 10 9 8 38 38 H 1.08998 * 113.47893 * 336.06278 * 12 11 10 39 39 H 1.09000 * 113.47733 * 106.53201 * 12 11 10 40 40 H 1.09001 * 114.17426 * 272.37844 * 13 12 11 41 41 H 0.97002 * 120.00324 * 179.97438 * 17 16 14 42 42 H 1.09004 * 113.47554 * 253.46935 * 22 11 10 43 43 H 1.08998 * 113.48049 * 23.87876 * 22 11 10 44 44 H 1.08992 * 109.47534 * 180.02562 * 23 10 9 45 45 H 1.08996 * 109.47134 * 59.99508 * 23 10 9 46 46 H 1.09000 * 109.47140 * 180.02562 * 24 7 6 47 47 H 1.09001 * 109.47230 * 299.99295 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 6 6.0331 4.2658 0.1254 9 6 5.5672 5.1181 -1.0567 10 6 6.0447 4.4822 -2.3637 11 7 5.5979 5.3009 -3.4987 12 6 6.4627 5.0911 -4.6746 13 6 6.3963 6.6044 -4.9239 14 6 7.7015 7.2203 -5.3578 15 1 8.3639 7.6552 -4.6240 16 6 8.0501 7.2286 -6.6918 17 7 9.1888 7.7665 -7.0706 18 14 6.9042 6.4770 -7.9612 19 1 5.9647 7.5150 -8.4562 20 1 7.7020 5.9494 -9.0972 21 1 6.1352 5.3692 -7.3396 22 6 6.1435 6.6683 -3.4111 23 6 5.4602 3.0738 -2.4890 24 6 5.9261 2.2213 -1.3069 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5844 3.4700 0.8895 31 1 3.5851 3.4690 -0.8904 32 1 5.7805 2.2500 0.8422 33 1 5.6929 4.7188 1.0565 34 1 7.1216 4.2087 0.1259 35 1 4.4787 5.1752 -1.0568 36 1 5.9840 6.1214 -0.9677 37 1 7.1332 4.4251 -2.3636 38 1 7.4616 4.7362 -4.4212 39 1 5.9916 4.5006 -5.4603 40 1 5.5484 6.9199 -5.5319 41 1 9.4343 7.7720 -8.0090 42 1 5.4017 7.4143 -3.1260 43 1 7.0566 6.7344 -2.8196 44 1 5.8007 2.6205 -3.4198 45 1 4.3717 3.1308 -2.4890 46 1 7.0146 2.1639 -1.3066 47 1 5.5098 1.2179 -1.3961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258030206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:38 Heat of formation + Delta-G solvation = -93.378585 kcal Electronic energy + Delta-G solvation = -24591.537931 eV Core-core repulsion = 21159.709814 eV Total energy + Delta-G solvation = -3431.828117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86599 -41.10782 -39.12835 -37.49046 -34.79020 -33.28861 -32.54887 -31.78517 -30.14310 -28.33888 -26.77079 -25.39472 -24.19342 -23.31154 -22.43384 -21.89164 -20.45246 -19.61093 -18.98247 -18.72538 -17.77787 -17.34752 -16.99511 -16.41364 -16.24740 -15.69898 -15.29251 -15.18892 -14.86838 -14.70229 -14.58685 -14.16330 -13.78911 -13.57139 -13.43577 -13.38109 -13.17189 -13.10531 -12.84966 -12.75312 -12.55827 -12.49507 -12.13417 -11.93844 -11.85918 -11.77960 -11.60816 -11.49977 -11.45446 -11.19841 -11.11364 -10.86035 -10.77180 -10.60123 -9.70007 -8.29531 -6.34221 1.21703 1.37630 1.39717 1.52478 1.74632 2.37538 3.04095 3.19164 3.61954 3.69763 3.86351 3.92811 4.00028 4.04015 4.08979 4.18249 4.24948 4.34294 4.35028 4.39651 4.46378 4.54236 4.58987 4.62554 4.64591 4.71210 4.79129 4.84895 4.89399 4.92312 4.99918 5.02716 5.06500 5.12505 5.17529 5.22028 5.27244 5.31758 5.34058 5.48613 5.51515 5.55933 5.63144 5.65497 6.29597 6.36016 6.71617 6.77709 7.32680 8.86579 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.003183 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.525448 B = 8794.590534 C = 9380.766549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.462 3.538 5 O -0.534 6.534 6 C -0.112 4.112 7 C -0.067 4.067 8 C -0.104 4.104 9 C -0.112 4.112 10 C 0.048 3.952 11 N -0.470 5.470 12 C -0.001 4.001 13 C -0.016 4.016 14 C -0.512 4.512 15 H 0.033 0.967 16 C 0.014 3.986 17 N -0.949 5.949 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.239 1.239 22 C 0.023 3.977 23 C -0.101 4.101 24 C -0.116 4.116 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.266 0.734 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 -13.964 17.669 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.307 3.693 5 O -0.424 6.424 6 C -0.149 4.149 7 C -0.085 4.085 8 C -0.142 4.142 9 C -0.149 4.149 10 C -0.061 4.061 11 N -0.192 5.192 12 C -0.130 4.130 13 C -0.035 4.035 14 C -0.550 4.550 15 H 0.051 0.949 16 C -0.183 4.183 17 N -0.589 5.589 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.162 1.162 22 C -0.106 4.106 23 C -0.138 4.138 24 C -0.154 4.154 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.178 -14.385 17.522 28.444 hybrid contribution 1.323 -0.265 -0.993 1.675 sum -15.855 -14.651 16.530 27.189 Atomic orbital electron populations 1.21822 0.90662 1.04255 1.03686 1.23232 0.96972 0.79515 1.02337 1.86527 1.24566 1.33449 1.83758 1.24271 0.80372 0.93515 0.71114 1.90622 1.60763 1.44402 1.46651 1.21726 0.95874 0.89757 1.07566 1.20910 0.92343 0.97136 0.98139 1.21527 1.00698 0.93533 0.98418 1.21619 1.02205 0.98663 0.92433 1.22281 0.96774 0.94468 0.92550 1.68857 1.43572 1.03104 1.03687 1.24084 0.94763 0.99853 0.94299 1.20527 0.95466 0.92754 0.94784 1.21156 1.03455 1.37484 0.92953 0.94877 1.25909 0.96528 0.95005 1.00892 1.70058 1.24621 1.46847 1.17368 0.85803 0.79156 0.80250 0.78150 1.19392 1.21552 1.16181 1.23554 0.97755 0.92171 0.97075 1.21436 1.00941 0.93588 0.97879 1.21635 1.00792 0.98976 0.94002 0.88389 0.91049 0.91570 0.91875 0.91184 0.84933 0.86671 0.90053 0.88940 0.91865 0.90031 0.92176 0.95373 0.93326 0.91803 0.92383 0.92522 0.89836 0.92947 0.93831 0.91143 0.92373 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.82 6.19 71.98 0.45 1.27 16 3 O -0.37 -7.08 10.22 -51.41 -0.53 -7.61 16 4 C 0.46 9.63 7.68 71.23 0.55 10.18 16 5 O -0.53 -13.93 13.72 21.97 0.30 -13.63 16 6 C -0.11 -1.83 4.58 29.85 0.14 -1.69 16 7 C -0.07 -1.24 2.31 -10.79 -0.02 -1.26 16 8 C -0.10 -1.84 5.45 30.60 0.17 -1.67 16 9 C -0.11 -2.53 4.83 30.59 0.15 -2.38 16 10 C 0.05 1.43 1.60 44.91 0.07 1.50 16 11 N -0.47 -16.72 6.15 -902.57 -5.55 -22.27 16 12 C 0.00 -0.02 6.48 83.57 0.54 0.52 16 13 C -0.02 -0.74 2.95 -11.20 -0.03 -0.77 16 14 C -0.51 -28.98 9.38 25.60 0.24 -28.74 16 15 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 16 C 0.01 0.81 5.47 84.65 0.46 1.28 16 17 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 18 Si 0.94 44.03 27.14 68.60 1.86 45.90 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.24 -10.32 5.68 99.48 0.56 -9.75 16 22 C 0.02 0.89 6.01 83.57 0.50 1.40 16 23 C -0.10 -2.70 5.15 30.59 0.16 -2.54 16 24 C -0.12 -2.74 5.19 30.59 0.16 -2.58 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.04 8.13 -2.39 -0.02 1.03 16 29 H 0.07 1.05 8.13 -2.38 -0.02 1.03 16 30 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 1.95 4.82 -2.39 -0.01 1.94 16 32 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.67 6.54 -2.39 -0.02 1.66 16 36 H 0.06 1.46 7.03 -2.39 -0.02 1.44 16 37 H 0.03 0.95 7.52 -2.39 -0.02 0.93 16 38 H 0.05 2.15 7.50 -2.39 -0.02 2.14 16 39 H 0.06 2.63 7.11 -2.39 -0.02 2.61 16 40 H 0.06 2.66 7.04 -2.39 -0.02 2.64 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 43 H 0.05 2.09 7.61 -2.39 -0.02 2.08 16 44 H 0.04 1.30 8.04 -2.39 -0.02 1.28 16 45 H 0.07 1.80 6.32 -2.39 -0.02 1.79 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.76 5.96 -2.39 -0.01 1.74 16 Total: -1.00 -67.53 355.85 1.44 -66.09 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.79 Total: 16.60 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.26 Total: -26.22 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -5.25 Total: -81.13 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.22 Total: -21.23 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.86 Total: 45.90 kcal Total: -67.53 1.44 -66.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258030206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.287 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds