Wall clock time and date at job start Tue Mar 31 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47441 * 2 1 4 4 C 1.53006 * 109.47049 * 119.99919 * 2 1 3 5 5 N 1.46505 * 109.46960 * 64.59285 * 4 2 1 6 6 C 1.46500 * 119.99578 * 266.77150 * 5 4 2 7 7 C 1.50702 * 109.47280 * 264.66525 * 6 5 4 8 8 H 1.07995 * 119.99491 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00174 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99653 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47355 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46859 * 119.99986 * 11 9 7 14 14 H 1.48497 * 109.47005 * 239.99661 * 11 9 7 15 15 C 1.34774 * 119.99937 * 86.77350 * 5 4 2 16 16 O 1.21277 * 119.99947 * 4.04961 * 15 5 4 17 17 C 1.50703 * 119.99933 * 184.04771 * 15 5 4 18 18 H 1.09002 * 109.35251 * 28.05218 * 17 15 5 19 19 C 1.52965 * 109.41024 * 268.23247 * 17 15 5 20 20 C 1.53227 * 109.39847 * 176.29698 * 19 17 15 21 21 C 1.51271 * 108.54051 * 54.62782 * 20 19 17 22 22 O 1.20755 * 120.85018 * 128.67135 * 21 20 19 23 23 C 1.51268 * 118.29653 * 308.64769 * 21 20 19 24 24 H 1.08998 * 109.62720 * 291.63267 * 23 21 20 25 25 C 1.53001 * 109.62421 * 171.06014 * 23 21 20 26 26 C 1.52954 * 109.41304 * 147.87810 * 17 15 5 27 27 H 1.09000 * 109.47318 * 300.00738 * 1 2 3 28 28 H 1.09000 * 109.47212 * 59.99856 * 1 2 3 29 29 H 1.08996 * 109.47448 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47318 * 239.99262 * 2 1 3 31 31 H 1.08996 * 109.47046 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46815 * 299.99753 * 3 2 1 33 33 H 1.08996 * 109.47235 * 60.00069 * 3 2 1 34 34 H 1.08996 * 109.46943 * 304.59594 * 4 2 1 35 35 H 1.08998 * 109.47084 * 184.59683 * 4 2 1 36 36 H 1.08995 * 109.47347 * 24.67039 * 6 5 4 37 37 H 1.09004 * 109.46655 * 144.66973 * 6 5 4 38 38 H 0.96997 * 120.00071 * 180.02562 * 10 9 7 39 39 H 1.09006 * 109.48142 * 296.27216 * 19 17 15 40 40 H 1.08992 * 109.48486 * 56.31911 * 19 17 15 41 41 H 1.09005 * 109.62182 * 174.34264 * 20 19 17 42 42 H 1.09001 * 109.62658 * 294.71840 * 20 19 17 43 43 H 1.09003 * 109.47443 * 300.96039 * 25 23 21 44 44 H 1.09003 * 109.46939 * 60.95999 * 25 23 21 45 45 H 1.09000 * 109.47246 * 180.95545 * 25 23 21 46 46 H 1.08996 * 109.48061 * 303.68558 * 26 17 15 47 47 H 1.08999 * 109.48199 * 63.72167 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6440 -2.1307 1.1953 6 6 0.3993 -2.5668 1.8331 7 6 0.6982 -3.0838 3.2168 8 1 1.7136 -3.0868 3.5843 9 6 -0.3248 -3.5529 4.0133 10 7 -1.5613 -3.5497 3.5654 11 14 0.0456 -4.1931 5.7286 12 1 1.5036 -4.0902 5.9912 13 1 -0.6963 -3.3850 6.7294 14 1 -0.3759 -5.6134 5.8286 15 6 2.4248 -3.0261 0.5588 16 8 3.4903 -2.6797 0.0946 17 6 1.9738 -4.4578 0.4241 18 1 0.8844 -4.4946 0.4215 19 6 2.5073 -5.2720 1.6041 20 6 1.9727 -6.7053 1.5165 21 6 2.3284 -7.2691 0.1586 22 8 2.8832 -8.3369 0.0575 23 6 1.9707 -6.4614 -1.0693 24 1 0.8874 -6.4337 -1.1866 25 6 2.6094 -7.0964 -2.3061 26 6 2.5053 -5.0369 -0.8880 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6109 -0.2572 2.1373 35 1 3.1268 -0.6505 1.2914 36 1 -0.2889 -1.7243 1.9008 37 1 -0.0548 -3.3600 1.2391 38 1 -2.2810 -3.8794 4.1259 39 1 3.5967 -5.2877 1.5720 40 1 2.1773 -4.8174 2.5381 41 1 2.4290 -7.3145 2.2968 42 1 0.8899 -6.7005 1.6419 43 1 3.6916 -7.1293 -2.1799 44 1 2.2274 -8.1094 -2.4327 45 1 2.3642 -6.5030 -3.1870 46 1 2.1741 -4.4156 -1.7201 47 1 3.5948 -5.0581 -0.8611 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292179671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:30 Heat of formation + Delta-G solvation = -110.327079 kcal Electronic energy + Delta-G solvation = -25675.314652 eV Core-core repulsion = 22242.751593 eV Total energy + Delta-G solvation = -3432.563059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22091 -39.06207 -36.48552 -35.50573 -34.07878 -32.62225 -32.32988 -29.45298 -27.70944 -26.83909 -26.19271 -25.35910 -23.08472 -22.22142 -21.75096 -19.94027 -18.84050 -18.11083 -16.65967 -16.24640 -15.88249 -15.60216 -15.35125 -14.61487 -14.54114 -14.45070 -14.20236 -13.86878 -13.26673 -13.12838 -12.69442 -12.54960 -12.49030 -12.27057 -12.16187 -12.02042 -11.84968 -11.69156 -11.45484 -11.40191 -11.17187 -11.04190 -11.01117 -10.84297 -10.73790 -10.58009 -10.56439 -10.31821 -10.19452 -10.04047 -9.73097 -9.05706 -8.93897 -8.58758 -7.72155 -6.25863 -4.32291 2.17042 3.15803 3.26055 3.28174 3.37697 3.87545 4.24510 4.27755 4.87414 4.97880 5.01483 5.07703 5.20482 5.27390 5.30955 5.41072 5.43604 5.49845 5.62360 5.68852 5.78667 5.82819 5.88829 5.89460 5.98898 6.01006 6.09180 6.10214 6.14473 6.18678 6.24684 6.32644 6.32999 6.37373 6.40998 6.54241 6.60786 6.70400 6.77672 6.82707 7.14469 7.51335 7.70180 7.70379 7.99771 8.30759 8.73151 9.00435 9.34999 10.80282 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.007250 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.471115 B = 3861.241481 C = 6034.082888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.592 5.592 6 C 0.234 3.766 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.888 3.112 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.523 3.477 16 O -0.575 6.575 17 C -0.105 4.105 18 H 0.103 0.897 19 C -0.106 4.106 20 C -0.165 4.165 21 C 0.368 3.632 22 O -0.466 6.466 23 C -0.142 4.142 24 H 0.105 0.895 25 C -0.137 4.137 26 C -0.089 4.089 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 0.977 -7.227 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.000 4.000 5 N -0.322 5.322 6 C 0.114 3.886 7 C -0.574 4.574 8 H 0.081 0.919 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.312 3.688 16 O -0.456 6.456 17 C -0.126 4.126 18 H 0.121 0.879 19 C -0.144 4.144 20 C -0.202 4.202 21 C 0.244 3.756 22 O -0.340 6.340 23 C -0.161 4.161 24 H 0.123 0.877 25 C -0.194 4.194 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.133 0.561 -7.445 8.097 hybrid contribution -0.212 -0.237 1.159 1.202 sum 2.922 0.324 -6.286 6.939 Atomic orbital electron populations 1.21881 0.95005 1.02496 1.00850 1.21486 0.96310 0.95821 0.99398 1.21748 1.00793 0.95999 1.01399 1.21349 0.99949 0.81603 0.97052 1.48222 1.24663 1.06762 1.52521 1.19554 0.80359 0.96310 0.92371 1.21512 0.94221 1.42237 0.99401 0.91908 1.24894 0.94856 0.95505 0.98252 1.69914 0.99372 1.46116 1.37209 0.86583 0.78749 0.78756 0.84343 1.19562 1.20868 1.20718 1.20317 0.83767 0.87306 0.77458 1.90582 1.23186 1.80903 1.50940 1.21281 1.03130 0.92502 0.95727 0.87872 1.21563 0.99958 0.92339 1.00520 1.22285 1.04243 0.98191 0.95526 1.25030 0.73198 0.84467 0.92924 1.90339 1.32413 1.21702 1.89566 1.21902 1.02682 0.96557 0.94932 0.87724 1.21629 1.01123 1.00486 0.96160 1.21431 1.01617 0.92689 0.97003 0.92700 0.93712 0.91780 0.91426 0.92853 0.93018 0.92714 0.90576 0.91259 0.94018 0.94491 0.92541 0.92133 0.87092 0.89534 0.87694 0.92361 0.92245 0.92092 0.90972 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.25 37.15 0.31 -1.84 16 2 C -0.11 -1.67 3.11 -90.62 -0.28 -1.95 16 3 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 4 C 0.12 2.17 4.84 -4.04 -0.02 2.15 16 5 N -0.59 -11.47 2.23 -175.05 -0.39 -11.86 16 6 C 0.23 4.99 3.86 -5.19 -0.02 4.97 16 7 C -0.54 -12.60 7.43 -34.44 -0.26 -12.85 16 8 H 0.06 1.53 7.31 -52.49 -0.38 1.14 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -22.70 13.29 55.43 0.74 -21.96 16 11 Si 0.89 19.36 29.54 -169.99 -5.02 14.34 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 15 C 0.52 10.15 6.64 -10.99 -0.07 10.07 16 16 O -0.57 -12.32 15.89 5.56 0.09 -12.23 16 17 C -0.11 -1.77 1.84 -91.81 -0.17 -1.94 16 18 H 0.10 1.76 5.90 -51.93 -0.31 1.45 16 19 C -0.11 -1.78 5.19 -26.63 -0.14 -1.92 16 20 C -0.16 -2.49 6.17 -27.49 -0.17 -2.66 16 21 C 0.37 5.58 6.58 -28.48 -0.19 5.40 16 22 O -0.47 -8.18 16.88 6.00 0.10 -8.08 16 23 C -0.14 -1.87 3.01 -91.37 -0.27 -2.15 16 24 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 25 C -0.14 -1.65 8.58 37.16 0.32 -1.33 16 26 C -0.09 -1.31 4.07 -26.64 -0.11 -1.42 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.06 6.24 -51.93 -0.32 0.73 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.07 1.25 7.47 -51.93 -0.39 0.87 16 36 H 0.04 0.94 6.60 -51.93 -0.34 0.60 16 37 H 0.04 0.81 5.92 -51.93 -0.31 0.51 16 38 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.11 2.11 5.46 -51.93 -0.28 1.83 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -27.08 366.50 -8.01 -35.09 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.22 Total: 4.50 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.83 Total: -5.33 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.35 Total: -33.82 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.19 Total: -20.31 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.08 -8.01 -35.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292179671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.241 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds