Wall clock time and date at job start Tue Mar 31 2020 07:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47441 * 2 1 4 4 C 1.53006 * 109.47049 * 119.99919 * 2 1 3 5 5 N 1.46505 * 109.46960 * 64.59285 * 4 2 1 6 6 C 1.46500 * 119.99578 * 266.77150 * 5 4 2 7 7 C 1.50702 * 109.47280 * 264.66525 * 6 5 4 8 8 H 1.07995 * 119.99491 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00174 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99653 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47355 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46859 * 119.99986 * 11 9 7 14 14 H 1.48497 * 109.47005 * 239.99661 * 11 9 7 15 15 C 1.34774 * 119.99937 * 86.77350 * 5 4 2 16 16 O 1.21277 * 119.99947 * 4.04961 * 15 5 4 17 17 C 1.50703 * 119.99933 * 184.04771 * 15 5 4 18 18 H 1.09002 * 109.35251 * 28.05218 * 17 15 5 19 19 C 1.52965 * 109.41024 * 268.23247 * 17 15 5 20 20 C 1.53227 * 109.39847 * 176.29698 * 19 17 15 21 21 C 1.51271 * 108.54051 * 54.62782 * 20 19 17 22 22 O 1.20755 * 120.85018 * 128.67135 * 21 20 19 23 23 C 1.51268 * 118.29653 * 308.64769 * 21 20 19 24 24 H 1.08998 * 109.62720 * 291.63267 * 23 21 20 25 25 C 1.53001 * 109.62421 * 171.06014 * 23 21 20 26 26 C 1.52954 * 109.41304 * 147.87810 * 17 15 5 27 27 H 1.09000 * 109.47318 * 300.00738 * 1 2 3 28 28 H 1.09000 * 109.47212 * 59.99856 * 1 2 3 29 29 H 1.08996 * 109.47448 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47318 * 239.99262 * 2 1 3 31 31 H 1.08996 * 109.47046 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46815 * 299.99753 * 3 2 1 33 33 H 1.08996 * 109.47235 * 60.00069 * 3 2 1 34 34 H 1.08996 * 109.46943 * 304.59594 * 4 2 1 35 35 H 1.08998 * 109.47084 * 184.59683 * 4 2 1 36 36 H 1.08995 * 109.47347 * 24.67039 * 6 5 4 37 37 H 1.09004 * 109.46655 * 144.66973 * 6 5 4 38 38 H 0.96997 * 120.00071 * 180.02562 * 10 9 7 39 39 H 1.09006 * 109.48142 * 296.27216 * 19 17 15 40 40 H 1.08992 * 109.48486 * 56.31911 * 19 17 15 41 41 H 1.09005 * 109.62182 * 174.34264 * 20 19 17 42 42 H 1.09001 * 109.62658 * 294.71840 * 20 19 17 43 43 H 1.09003 * 109.47443 * 300.96039 * 25 23 21 44 44 H 1.09003 * 109.46939 * 60.95999 * 25 23 21 45 45 H 1.09000 * 109.47246 * 180.95545 * 25 23 21 46 46 H 1.08996 * 109.48061 * 303.68558 * 26 17 15 47 47 H 1.08999 * 109.48199 * 63.72167 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6440 -2.1307 1.1953 6 6 0.3993 -2.5668 1.8331 7 6 0.6982 -3.0838 3.2168 8 1 1.7136 -3.0868 3.5843 9 6 -0.3248 -3.5529 4.0133 10 7 -1.5613 -3.5497 3.5654 11 14 0.0456 -4.1931 5.7286 12 1 1.5036 -4.0902 5.9912 13 1 -0.6963 -3.3850 6.7294 14 1 -0.3759 -5.6134 5.8286 15 6 2.4248 -3.0261 0.5588 16 8 3.4903 -2.6797 0.0946 17 6 1.9738 -4.4578 0.4241 18 1 0.8844 -4.4946 0.4215 19 6 2.5073 -5.2720 1.6041 20 6 1.9727 -6.7053 1.5165 21 6 2.3284 -7.2691 0.1586 22 8 2.8832 -8.3369 0.0575 23 6 1.9707 -6.4614 -1.0693 24 1 0.8874 -6.4337 -1.1866 25 6 2.6094 -7.0964 -2.3061 26 6 2.5053 -5.0369 -0.8880 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6109 -0.2572 2.1373 35 1 3.1268 -0.6505 1.2914 36 1 -0.2889 -1.7243 1.9008 37 1 -0.0548 -3.3600 1.2391 38 1 -2.2810 -3.8794 4.1259 39 1 3.5967 -5.2877 1.5720 40 1 2.1773 -4.8174 2.5381 41 1 2.4290 -7.3145 2.2968 42 1 0.8899 -6.7005 1.6419 43 1 3.6916 -7.1293 -2.1799 44 1 2.2274 -8.1094 -2.4327 45 1 2.3642 -6.5030 -3.1870 46 1 2.1741 -4.4156 -1.7201 47 1 3.5948 -5.0581 -0.8611 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292179671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:29 Heat of formation + Delta-G solvation = -122.446325 kcal Electronic energy + Delta-G solvation = -25675.840182 eV Core-core repulsion = 22242.751593 eV Total energy + Delta-G solvation = -3433.088589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59595 -40.48192 -37.84204 -36.95066 -35.61133 -34.12450 -33.75935 -30.75731 -29.41440 -27.97789 -27.47455 -26.70356 -24.82326 -23.46226 -23.08716 -21.20383 -20.06517 -19.66657 -18.47026 -17.79479 -17.32116 -16.85436 -16.66944 -16.32971 -15.98848 -15.69201 -15.56439 -15.13109 -14.63163 -14.49112 -14.20861 -13.96596 -13.75416 -13.59526 -13.51817 -13.25839 -13.08622 -13.04462 -12.91506 -12.72927 -12.63605 -12.52907 -12.45354 -12.10842 -12.01679 -11.94374 -11.89960 -11.76563 -11.59383 -11.49627 -11.43662 -10.61817 -10.37177 -10.29812 -9.35217 -8.14370 -6.25170 0.93711 1.40940 1.47671 1.54589 1.80793 2.34249 2.49052 3.07361 3.16663 3.64613 3.69692 3.77674 3.97340 4.01254 4.07903 4.21292 4.22953 4.28325 4.38534 4.47164 4.54641 4.60901 4.68652 4.75645 4.83526 4.83740 4.90141 4.94233 4.96552 5.00956 5.05190 5.06815 5.09627 5.13793 5.22632 5.25568 5.29931 5.36929 5.41463 5.44783 5.49111 5.73611 5.95208 6.15365 6.48403 6.63920 6.90085 7.37548 7.49180 8.90633 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.007250 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.471115 B = 3861.241481 C = 6034.082888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.594 5.594 6 C 0.250 3.750 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.034 3.966 10 N -0.913 5.913 11 Si 0.937 3.063 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.277 1.277 15 C 0.518 3.482 16 O -0.596 6.596 17 C -0.102 4.102 18 H 0.103 0.897 19 C -0.100 4.100 20 C -0.161 4.161 21 C 0.371 3.629 22 O -0.490 6.490 23 C -0.135 4.135 24 H 0.126 0.874 25 C -0.134 4.134 26 C -0.080 4.080 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 1.137 -7.992 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.130 3.870 7 C -0.572 4.572 8 H 0.070 0.930 9 C -0.167 4.167 10 N -0.553 5.553 11 Si 0.764 3.236 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.203 1.203 15 C 0.308 3.692 16 O -0.479 6.479 17 C -0.123 4.123 18 H 0.121 0.879 19 C -0.138 4.138 20 C -0.199 4.199 21 C 0.249 3.751 22 O -0.365 6.365 23 C -0.154 4.154 24 H 0.144 0.856 25 C -0.191 4.191 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.839 0.735 -8.208 8.716 hybrid contribution -0.089 -0.237 1.416 1.438 sum 2.750 0.498 -6.792 7.345 Atomic orbital electron populations 1.21817 0.94611 1.01418 1.01840 1.21404 0.96502 0.97108 0.97268 1.21708 1.00879 0.94108 1.02677 1.21488 0.99468 0.80962 0.98415 1.48240 1.24067 1.07728 1.52248 1.19235 0.80784 0.95522 0.91484 1.21621 0.93556 1.41715 1.00299 0.93038 1.25394 0.94763 0.95846 1.00734 1.69980 0.99926 1.47137 1.38212 0.85820 0.78233 0.78338 0.81220 1.19760 1.21055 1.20292 1.20755 0.83364 0.88218 0.76882 1.90565 1.24028 1.81455 1.51890 1.21289 1.03027 0.90972 0.96965 0.87916 1.21431 0.99689 0.93309 0.99388 1.22253 1.04594 0.96925 0.96098 1.25224 0.72233 0.84119 0.93496 1.90338 1.33495 1.22859 1.89846 1.21910 1.04011 0.94998 0.94478 0.85586 1.21626 1.00368 1.00915 0.96229 1.21347 1.00811 0.93660 0.95986 0.92843 0.91542 0.93868 0.92702 0.92729 0.91221 0.91952 0.90831 0.92107 0.95165 0.94857 0.92479 0.92543 0.89395 0.89151 0.87029 0.93338 0.91989 0.89998 0.89892 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.25 71.98 0.59 -3.38 16 2 C -0.10 -3.02 3.11 -10.79 -0.03 -3.06 16 3 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 4 C 0.12 4.19 4.84 86.38 0.42 4.60 16 5 N -0.59 -23.12 2.23 -826.14 -1.84 -24.96 16 6 C 0.25 10.74 3.86 85.63 0.33 11.07 16 7 C -0.53 -25.18 7.43 25.60 0.19 -24.99 16 8 H 0.05 2.53 7.31 -2.91 -0.02 2.51 16 9 C 0.03 1.63 5.46 84.66 0.46 2.09 16 10 N -0.91 -46.43 13.29 21.45 0.28 -46.14 16 11 Si 0.94 39.48 29.54 68.60 2.03 41.50 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 15 C 0.52 20.11 6.64 87.66 0.58 20.69 16 16 O -0.60 -25.58 15.89 -3.02 -0.05 -25.63 16 17 C -0.10 -3.36 1.84 -11.57 -0.02 -3.38 16 18 H 0.10 3.43 5.90 -2.39 -0.01 3.41 16 19 C -0.10 -3.36 5.19 30.66 0.16 -3.20 16 20 C -0.16 -4.73 6.17 30.11 0.19 -4.54 16 21 C 0.37 10.81 6.58 29.46 0.19 11.00 16 22 O -0.49 -16.66 16.88 -1.43 -0.02 -16.69 16 23 C -0.14 -3.31 3.01 -11.28 -0.03 -3.34 16 24 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 25 C -0.13 -2.94 8.58 71.98 0.62 -2.33 16 26 C -0.08 -2.24 4.07 30.66 0.12 -2.12 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.40 6.24 -2.39 -0.01 1.38 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 2.57 8.05 -2.39 -0.02 2.55 16 35 H 0.06 2.22 7.47 -2.39 -0.02 2.20 16 36 H 0.03 1.38 6.60 -2.39 -0.02 1.36 16 37 H 0.03 1.47 5.92 -2.38 -0.01 1.46 16 38 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 39 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.09 3.38 5.46 -2.39 -0.01 3.37 16 41 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.34 8.06 -2.39 -0.02 1.32 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 Total: -1.00 -56.61 366.50 5.75 -50.85 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.93 Total: 24.42 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.43 Total: -3.36 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.56 Total: -71.10 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.07 Total: -42.31 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Total: -56.61 5.75 -50.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292179671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.595 kcal (2) G-P(sol) polarization free energy of solvation -56.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds