Wall clock time and date at job start Tue Mar 31 2020 07:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47294 * 2 1 4 4 C 1.53005 * 109.46543 * 119.99569 * 2 1 3 5 5 N 1.46503 * 109.47258 * 65.00307 * 4 2 1 6 6 C 1.46501 * 119.99808 * 264.57202 * 5 4 2 7 7 C 1.50700 * 109.46511 * 264.12282 * 6 5 4 8 8 H 1.08001 * 120.00604 * 359.97438 * 7 6 5 9 9 C 1.37889 * 119.99494 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99738 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99706 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47220 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47069 * 119.99876 * 11 9 7 14 14 H 1.48497 * 109.46883 * 240.00062 * 11 9 7 15 15 C 1.34777 * 120.00085 * 84.56616 * 5 4 2 16 16 O 1.21277 * 120.00206 * 3.91220 * 15 5 4 17 17 C 1.50704 * 120.00046 * 183.91127 * 15 5 4 18 18 H 1.08995 * 109.41023 * 309.43896 * 17 15 5 19 19 C 1.52955 * 109.35357 * 69.26417 * 17 15 5 20 20 C 1.53228 * 109.40421 * 183.67034 * 19 17 15 21 21 C 1.51266 * 108.53577 * 305.37220 * 20 19 17 22 22 O 1.20758 * 120.85167 * 231.62071 * 21 20 19 23 23 C 1.51276 * 118.30151 * 51.34715 * 21 20 19 24 24 H 1.08995 * 109.62318 * 188.74630 * 23 21 20 25 25 C 1.52998 * 109.62644 * 68.36660 * 23 21 20 26 26 C 1.52951 * 109.41221 * 189.58277 * 17 15 5 27 27 H 1.08998 * 109.47657 * 300.00683 * 1 2 3 28 28 H 1.09008 * 109.46479 * 60.00347 * 1 2 3 29 29 H 1.08997 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47183 * 239.99368 * 2 1 3 31 31 H 1.08998 * 109.47085 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46774 * 299.99467 * 3 2 1 33 33 H 1.08998 * 109.47326 * 59.99115 * 3 2 1 34 34 H 1.08998 * 109.47464 * 304.99940 * 4 2 1 35 35 H 1.09003 * 109.46817 * 185.00073 * 4 2 1 36 36 H 1.08994 * 109.47399 * 24.12364 * 6 5 4 37 37 H 1.08996 * 109.46950 * 144.12531 * 6 5 4 38 38 H 0.97006 * 119.99631 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.48136 * 303.64456 * 19 17 15 40 40 H 1.09001 * 109.48709 * 63.69144 * 19 17 15 41 41 H 1.08999 * 109.63066 * 185.65811 * 20 19 17 42 42 H 1.09007 * 109.62825 * 65.08515 * 20 19 17 43 43 H 1.09003 * 109.47196 * 60.00089 * 25 23 21 44 44 H 1.08995 * 109.47344 * 180.02562 * 25 23 21 45 45 H 1.09005 * 109.47140 * 300.00118 * 25 23 21 46 46 H 1.08993 * 109.48548 * 56.38617 * 26 17 15 47 47 H 1.09007 * 109.49545 * 296.34705 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1908 6 6 0.4329 -2.5862 1.8643 7 6 0.7835 -3.1303 3.2252 8 1 1.8119 -3.1381 3.5552 9 6 -0.2086 -3.6182 4.0491 10 7 -1.4607 -3.6092 3.6471 11 14 0.2260 -4.2934 5.7357 12 1 1.6925 -4.1917 5.9467 13 1 -0.4794 -3.5080 6.7801 14 1 -0.1895 -5.7165 5.8213 15 6 2.4176 -3.0144 0.5171 16 8 3.4631 -2.6537 0.0196 17 6 1.9740 -4.4483 0.3821 18 1 1.7105 -4.8400 1.3645 19 6 0.7531 -4.5168 -0.5368 20 6 0.2456 -5.9611 -0.6021 21 6 1.3917 -6.8552 -1.0207 22 8 1.2706 -7.6273 -1.9412 23 6 2.6957 -6.7528 -0.2606 24 1 3.4628 -7.3364 -0.7695 25 6 2.5047 -7.2842 1.1614 26 6 3.1143 -5.2798 -0.2077 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6052 -0.2616 2.1371 35 1 3.1262 -0.6443 1.2953 36 1 -0.2546 -1.7476 1.9744 37 1 -0.0404 -3.3685 1.2711 38 1 -2.1587 -3.9528 4.2265 39 1 -0.0337 -3.8724 -0.1446 40 1 1.0315 -4.1838 -1.5367 41 1 -0.5605 -6.0333 -1.3323 42 1 -0.1173 -6.2664 0.3794 43 1 2.1905 -8.3271 1.1204 44 1 3.4453 -7.2089 1.7068 45 1 1.7419 -6.6946 1.6702 46 1 4.0009 -5.1761 0.4177 47 1 3.3370 -4.9288 -1.2154 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292179672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:32 Heat of formation + Delta-G solvation = -106.528118 kcal Electronic energy + Delta-G solvation = -25900.787444 eV Core-core repulsion = 22468.389120 eV Total energy + Delta-G solvation = -3432.398324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34498 -39.04402 -36.57125 -35.70857 -34.11111 -32.48356 -32.11038 -29.55821 -27.68824 -26.83451 -26.32565 -25.14719 -23.30180 -22.51401 -21.76595 -20.05087 -18.52813 -18.03657 -16.82695 -16.23046 -16.00173 -15.38119 -15.16485 -14.70827 -14.58579 -14.44841 -14.32146 -13.76061 -13.44624 -13.12968 -13.06354 -12.54897 -12.44205 -12.40197 -12.18600 -12.01654 -11.80196 -11.70297 -11.49778 -11.38633 -11.22293 -11.07691 -10.94459 -10.83875 -10.69603 -10.61730 -10.51237 -10.29297 -10.16111 -10.04055 -9.71672 -9.10436 -8.95648 -8.58074 -7.70462 -6.25119 -4.31950 2.10924 3.15699 3.25743 3.28509 3.38896 3.89341 4.24107 4.28281 4.79500 4.93947 5.03224 5.09515 5.14845 5.25786 5.28576 5.30040 5.43644 5.49464 5.57584 5.68501 5.77439 5.78704 5.86440 5.93101 5.99699 6.02102 6.06945 6.13189 6.15202 6.16486 6.20756 6.24460 6.31406 6.34537 6.40570 6.51264 6.57797 6.66687 6.70664 6.81436 7.18562 7.52743 7.63326 7.71132 8.01213 8.31784 8.74408 9.00972 9.36086 10.80850 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.007589 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.960784 B = 3688.588357 C = 5569.317358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.592 5.592 6 C 0.226 3.774 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.889 5.889 11 Si 0.891 3.109 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.524 3.476 16 O -0.575 6.575 17 C -0.112 4.112 18 H 0.120 0.880 19 C -0.107 4.107 20 C -0.166 4.166 21 C 0.371 3.629 22 O -0.469 6.469 23 C -0.138 4.138 24 H 0.091 0.909 25 C -0.147 4.147 26 C -0.087 4.087 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 0.568 -5.246 6.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.322 5.322 6 C 0.106 3.894 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.718 3.282 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.312 3.688 16 O -0.456 6.456 17 C -0.133 4.133 18 H 0.138 0.862 19 C -0.145 4.145 20 C -0.204 4.204 21 C 0.247 3.753 22 O -0.343 6.343 23 C -0.157 4.157 24 H 0.109 0.891 25 C -0.204 4.204 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.363 0.315 -5.908 6.805 hybrid contribution -0.001 -0.295 1.242 1.277 sum 3.362 0.019 -4.666 5.751 Atomic orbital electron populations 1.21863 0.95050 1.02390 1.00861 1.21487 0.96255 0.95836 0.99474 1.21746 1.00803 0.95998 1.01375 1.21348 0.99932 0.81589 0.97022 1.48189 1.26562 1.06922 1.50487 1.19756 0.81127 0.96407 0.92105 1.21562 0.94200 1.41382 1.00522 0.92115 1.24905 0.94806 0.95589 0.98306 1.69916 0.99665 1.45925 1.37177 0.86547 0.78790 0.78775 0.84066 1.19643 1.20895 1.20774 1.20306 0.83404 0.87422 0.77676 1.90582 1.24372 1.80302 1.50380 1.21366 0.95816 0.93394 1.02736 0.86191 1.21635 0.97952 0.95438 0.99470 1.22282 0.97507 0.95877 1.04699 1.25016 0.90568 0.78930 0.80783 1.90358 1.84097 1.33738 1.26112 1.21952 0.96693 0.98851 0.98236 0.89070 1.21829 1.03654 1.00886 0.94039 1.21368 0.98067 0.90830 1.02267 0.92722 0.93676 0.91911 0.91346 0.92850 0.93022 0.92740 0.90568 0.91396 0.94226 0.93381 0.92562 0.88493 0.91885 0.89405 0.87473 0.92594 0.91297 0.90608 0.90319 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.35 37.16 0.31 -1.82 16 2 C -0.11 -1.68 3.09 -90.62 -0.28 -1.96 16 3 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 4 C 0.12 2.19 4.79 -4.04 -0.02 2.17 16 5 N -0.59 -11.46 2.21 -175.06 -0.39 -11.85 16 6 C 0.23 4.81 3.64 -5.19 -0.02 4.79 16 7 C -0.54 -12.90 8.63 -34.44 -0.30 -13.20 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -22.70 13.29 55.43 0.74 -21.97 16 11 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.52 10.14 6.85 -10.98 -0.08 10.07 16 16 O -0.58 -12.27 15.67 5.56 0.09 -12.18 16 17 C -0.11 -1.87 1.46 -91.82 -0.13 -2.01 16 18 H 0.12 2.15 5.35 -51.93 -0.28 1.87 16 19 C -0.11 -1.64 4.87 -26.64 -0.13 -1.77 16 20 C -0.17 -2.34 5.90 -27.49 -0.16 -2.50 16 21 C 0.37 5.54 6.06 -28.47 -0.17 5.37 16 22 O -0.47 -8.22 17.89 6.00 0.11 -8.11 16 23 C -0.14 -1.87 3.18 -91.37 -0.29 -2.16 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 25 C -0.15 -1.86 8.90 37.16 0.33 -1.53 16 26 C -0.09 -1.31 3.99 -26.64 -0.11 -1.42 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.06 1.02 6.42 -51.93 -0.33 0.69 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 35 H 0.07 1.23 7.54 -51.93 -0.39 0.84 16 36 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 37 H 0.05 1.03 4.30 -51.93 -0.22 0.80 16 38 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 39 H 0.10 1.58 5.37 -51.93 -0.28 1.30 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.11 1.49 7.82 -51.93 -0.41 1.09 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.04 5.97 -51.93 -0.31 0.73 16 46 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 47 H 0.07 1.07 8.09 -51.92 -0.42 0.65 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -27.40 363.83 -7.83 -35.22 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.03 Total: 4.83 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.80 Total: -5.86 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.35 Total: -33.81 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.19 Total: -20.29 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.40 -7.83 -35.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292179672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.306 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds