Wall clock time and date at job start Tue Mar 31 2020 07:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47294 * 2 1 4 4 C 1.53005 * 109.46543 * 119.99569 * 2 1 3 5 5 N 1.46503 * 109.47258 * 65.00307 * 4 2 1 6 6 C 1.46501 * 119.99808 * 264.57202 * 5 4 2 7 7 C 1.50700 * 109.46511 * 264.12282 * 6 5 4 8 8 H 1.08001 * 120.00604 * 359.97438 * 7 6 5 9 9 C 1.37889 * 119.99494 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99738 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99706 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47220 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47069 * 119.99876 * 11 9 7 14 14 H 1.48497 * 109.46883 * 240.00062 * 11 9 7 15 15 C 1.34777 * 120.00085 * 84.56616 * 5 4 2 16 16 O 1.21277 * 120.00206 * 3.91220 * 15 5 4 17 17 C 1.50704 * 120.00046 * 183.91127 * 15 5 4 18 18 H 1.08995 * 109.41023 * 309.43896 * 17 15 5 19 19 C 1.52955 * 109.35357 * 69.26417 * 17 15 5 20 20 C 1.53228 * 109.40421 * 183.67034 * 19 17 15 21 21 C 1.51266 * 108.53577 * 305.37220 * 20 19 17 22 22 O 1.20758 * 120.85167 * 231.62071 * 21 20 19 23 23 C 1.51276 * 118.30151 * 51.34715 * 21 20 19 24 24 H 1.08995 * 109.62318 * 188.74630 * 23 21 20 25 25 C 1.52998 * 109.62644 * 68.36660 * 23 21 20 26 26 C 1.52951 * 109.41221 * 189.58277 * 17 15 5 27 27 H 1.08998 * 109.47657 * 300.00683 * 1 2 3 28 28 H 1.09008 * 109.46479 * 60.00347 * 1 2 3 29 29 H 1.08997 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47183 * 239.99368 * 2 1 3 31 31 H 1.08998 * 109.47085 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46774 * 299.99467 * 3 2 1 33 33 H 1.08998 * 109.47326 * 59.99115 * 3 2 1 34 34 H 1.08998 * 109.47464 * 304.99940 * 4 2 1 35 35 H 1.09003 * 109.46817 * 185.00073 * 4 2 1 36 36 H 1.08994 * 109.47399 * 24.12364 * 6 5 4 37 37 H 1.08996 * 109.46950 * 144.12531 * 6 5 4 38 38 H 0.97006 * 119.99631 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.48136 * 303.64456 * 19 17 15 40 40 H 1.09001 * 109.48709 * 63.69144 * 19 17 15 41 41 H 1.08999 * 109.63066 * 185.65811 * 20 19 17 42 42 H 1.09007 * 109.62825 * 65.08515 * 20 19 17 43 43 H 1.09003 * 109.47196 * 60.00089 * 25 23 21 44 44 H 1.08995 * 109.47344 * 180.02562 * 25 23 21 45 45 H 1.09005 * 109.47140 * 300.00118 * 25 23 21 46 46 H 1.08993 * 109.48548 * 56.38617 * 26 17 15 47 47 H 1.09007 * 109.49545 * 296.34705 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1908 6 6 0.4329 -2.5862 1.8643 7 6 0.7835 -3.1303 3.2252 8 1 1.8119 -3.1381 3.5552 9 6 -0.2086 -3.6182 4.0491 10 7 -1.4607 -3.6092 3.6471 11 14 0.2260 -4.2934 5.7357 12 1 1.6925 -4.1917 5.9467 13 1 -0.4794 -3.5080 6.7801 14 1 -0.1895 -5.7165 5.8213 15 6 2.4176 -3.0144 0.5171 16 8 3.4631 -2.6537 0.0196 17 6 1.9740 -4.4483 0.3821 18 1 1.7105 -4.8400 1.3645 19 6 0.7531 -4.5168 -0.5368 20 6 0.2456 -5.9611 -0.6021 21 6 1.3917 -6.8552 -1.0207 22 8 1.2706 -7.6273 -1.9412 23 6 2.6957 -6.7528 -0.2606 24 1 3.4628 -7.3364 -0.7695 25 6 2.5047 -7.2842 1.1614 26 6 3.1143 -5.2798 -0.2077 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6052 -0.2616 2.1371 35 1 3.1262 -0.6443 1.2953 36 1 -0.2546 -1.7476 1.9744 37 1 -0.0404 -3.3685 1.2711 38 1 -2.1587 -3.9528 4.2265 39 1 -0.0337 -3.8724 -0.1446 40 1 1.0315 -4.1838 -1.5367 41 1 -0.5605 -6.0333 -1.3323 42 1 -0.1173 -6.2664 0.3794 43 1 2.1905 -8.3271 1.1204 44 1 3.4453 -7.2089 1.7068 45 1 1.7419 -6.6946 1.6702 46 1 4.0009 -5.1761 0.4177 47 1 3.3370 -4.9288 -1.2154 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292179672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:32 Heat of formation + Delta-G solvation = -118.991162 kcal Electronic energy + Delta-G solvation = -25901.327882 eV Core-core repulsion = 22468.389120 eV Total energy + Delta-G solvation = -3432.938762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70495 -40.45798 -37.89834 -37.16267 -35.64279 -34.16758 -33.37705 -30.83712 -29.39424 -27.97926 -27.63074 -26.46309 -25.00851 -23.73594 -23.14021 -21.33069 -19.93674 -19.33917 -18.62513 -17.79465 -17.43409 -16.73280 -16.41247 -16.28805 -16.15382 -15.75013 -15.60761 -15.04993 -14.76618 -14.45819 -14.38127 -14.15951 -13.74182 -13.63950 -13.55348 -13.27450 -13.07325 -13.03265 -12.91872 -12.80162 -12.67941 -12.55073 -12.36562 -12.11195 -12.06496 -11.96240 -11.90675 -11.73232 -11.54928 -11.45974 -11.35690 -10.62707 -10.41718 -10.28182 -9.33475 -8.14066 -6.26374 0.89131 1.41617 1.47693 1.55487 1.82572 2.35562 2.50323 3.07077 3.16171 3.57446 3.66746 3.75755 3.97096 3.99913 4.06561 4.14463 4.21893 4.28132 4.33050 4.45522 4.58338 4.59337 4.67040 4.72810 4.80909 4.83106 4.88304 4.92527 4.95145 4.98513 5.02108 5.04699 5.05832 5.10881 5.15273 5.23986 5.27745 5.40998 5.43966 5.47703 5.49408 5.74801 5.95954 6.16525 6.42827 6.64615 6.90592 7.37632 7.49420 8.90334 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.007589 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.960784 B = 3688.588357 C = 5569.317358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.594 5.594 6 C 0.241 3.759 7 C -0.543 4.543 8 H 0.047 0.953 9 C 0.032 3.968 10 N -0.912 5.912 11 Si 0.942 3.058 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.518 3.482 16 O -0.596 6.596 17 C -0.108 4.108 18 H 0.110 0.890 19 C -0.100 4.100 20 C -0.161 4.161 21 C 0.376 3.624 22 O -0.494 6.494 23 C -0.130 4.130 24 H 0.105 0.895 25 C -0.146 4.146 26 C -0.080 4.080 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.266 0.734 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 0.396 -5.273 6.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.193 4.193 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.121 3.879 7 C -0.582 4.582 8 H 0.066 0.934 9 C -0.169 4.169 10 N -0.551 5.551 11 Si 0.769 3.231 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.307 3.693 16 O -0.479 6.479 17 C -0.129 4.129 18 H 0.128 0.872 19 C -0.138 4.138 20 C -0.199 4.199 21 C 0.254 3.746 22 O -0.369 6.369 23 C -0.149 4.149 24 H 0.123 0.877 25 C -0.203 4.203 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.509 0.155 -5.928 6.890 hybrid contribution -0.026 -0.190 1.257 1.271 sum 3.483 -0.035 -4.671 5.827 Atomic orbital electron populations 1.21807 0.94602 1.01401 1.01855 1.21402 0.96510 0.97116 0.97291 1.21706 1.00879 0.94102 1.02662 1.21482 0.99470 0.81006 0.98327 1.48203 1.26014 1.07842 1.50206 1.19466 0.81467 0.95716 0.91280 1.21701 0.93506 1.41296 1.01676 0.93430 1.25443 0.94747 0.95886 1.00868 1.69983 1.00246 1.46697 1.38167 0.85745 0.78222 0.78396 0.80759 1.19844 1.21063 1.20124 1.20764 0.83001 0.88386 0.77122 1.90563 1.25184 1.80899 1.51263 1.21350 0.97018 0.91813 1.02685 0.87243 1.21535 0.96914 0.96118 0.99214 1.22253 0.97648 0.94729 1.05241 1.25200 0.91092 0.78209 0.80086 1.90358 1.84552 1.34881 1.27155 1.21913 0.96306 0.97878 0.98827 0.87716 1.21833 1.03901 1.01333 0.93205 1.21296 0.97281 0.91519 1.01735 0.92768 0.91581 0.93888 0.92846 0.92737 0.91282 0.91898 0.90829 0.92208 0.95628 0.93117 0.92443 0.89604 0.91383 0.88289 0.87134 0.91328 0.90211 0.91867 0.90491 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.35 71.98 0.60 -3.41 16 2 C -0.10 -3.08 3.09 -10.79 -0.03 -3.12 16 3 C -0.14 -3.19 9.19 71.98 0.66 -2.53 16 4 C 0.12 4.24 4.79 86.38 0.41 4.66 16 5 N -0.59 -23.22 2.21 -826.14 -1.82 -25.05 16 6 C 0.24 10.37 3.64 85.63 0.31 10.69 16 7 C -0.54 -26.11 8.63 25.60 0.22 -25.89 16 8 H 0.05 2.38 7.81 -2.91 -0.02 2.36 16 9 C 0.03 1.54 5.46 84.66 0.46 2.00 16 10 N -0.91 -46.32 13.29 21.45 0.28 -46.04 16 11 Si 0.94 39.46 29.54 68.60 2.03 41.49 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 15 C 0.52 20.16 6.85 87.66 0.60 20.76 16 16 O -0.60 -25.51 15.67 -3.02 -0.05 -25.56 16 17 C -0.11 -3.57 1.46 -11.57 -0.02 -3.59 16 18 H 0.11 3.91 5.35 -2.39 -0.01 3.90 16 19 C -0.10 -3.01 4.87 30.66 0.15 -2.86 16 20 C -0.16 -4.37 5.90 30.10 0.18 -4.19 16 21 C 0.38 10.73 6.06 29.46 0.18 10.91 16 22 O -0.49 -16.64 17.89 -1.44 -0.03 -16.67 16 23 C -0.13 -3.32 3.18 -11.28 -0.04 -3.36 16 24 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 25 C -0.15 -3.44 8.90 71.98 0.64 -2.80 16 26 C -0.08 -2.34 3.99 30.66 0.12 -2.22 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.60 8.14 -2.38 -0.02 1.59 16 29 H 0.04 1.39 6.42 -2.39 -0.02 1.38 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 2.60 8.03 -2.39 -0.02 2.58 16 35 H 0.06 2.19 7.54 -2.39 -0.02 2.17 16 36 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 37 H 0.05 2.18 4.30 -2.39 -0.01 2.17 16 38 H 0.27 12.95 8.31 -92.70 -0.77 12.18 16 39 H 0.09 2.79 5.37 -2.39 -0.01 2.78 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.11 2.97 7.82 -2.38 -0.02 2.95 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.66 5.97 -2.38 -0.01 1.65 16 46 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 47 H 0.06 1.97 8.09 -2.38 -0.02 1.95 16 Total: -1.00 -56.82 363.83 5.81 -51.02 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.94 Total: 25.75 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.45 Total: -4.95 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.54 Total: -71.08 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.07 Total: -42.23 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -56.82 5.81 -51.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292179672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.975 kcal (2) G-P(sol) polarization free energy of solvation -56.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds