Wall clock time and date at job start Tue Mar 31 2020 07:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47246 * 2 1 4 4 O 1.42902 * 109.46940 * 120.00128 * 2 1 3 5 5 C 1.42900 * 114.00133 * 264.00051 * 4 2 1 6 6 C 1.52997 * 109.47039 * 216.93415 * 5 4 2 7 7 C 1.53002 * 109.46892 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47498 * 59.99637 * 7 6 5 9 9 C 1.52999 * 109.46824 * 300.00089 * 8 7 6 10 10 C 1.52999 * 109.47170 * 96.92728 * 5 4 2 11 11 C 1.50699 * 109.47098 * 240.00135 * 2 1 3 12 12 O 1.21283 * 119.99871 * 245.00512 * 11 2 1 13 13 N 1.34776 * 120.00012 * 64.99902 * 11 2 1 14 14 C 1.46497 * 119.99856 * 180.02562 * 13 11 2 15 15 C 1.53007 * 109.46880 * 175.76377 * 14 13 11 16 16 C 1.50689 * 115.55245 * 62.42815 * 15 14 13 17 17 H 1.08003 * 120.00390 * 265.02026 * 16 15 14 18 18 C 1.37885 * 120.00073 * 85.02170 * 16 15 14 19 19 N 1.31512 * 119.99791 * 2.09494 * 18 16 15 20 20 Si 1.86801 * 119.99923 * 182.10095 * 18 16 15 21 21 H 1.48500 * 109.47029 * 90.00041 * 20 18 16 22 22 H 1.48507 * 109.46676 * 209.99659 * 20 18 16 23 23 H 1.48493 * 109.47240 * 329.99640 * 20 18 16 24 24 C 1.53005 * 117.49458 * 276.75584 * 15 14 13 25 25 C 1.53005 * 117.49457 * 208.10327 * 15 14 13 26 26 H 1.09002 * 109.46596 * 294.86210 * 1 2 3 27 27 H 1.08992 * 109.46922 * 54.85983 * 1 2 3 28 28 H 1.08999 * 109.47041 * 174.86489 * 1 2 3 29 29 H 1.09004 * 109.47056 * 336.92777 * 5 4 2 30 30 H 1.08998 * 109.47436 * 59.99854 * 6 5 4 31 31 H 1.08997 * 109.46939 * 299.99346 * 6 5 4 32 32 H 1.09004 * 109.47200 * 299.99754 * 7 6 5 33 33 H 1.09002 * 109.47270 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.46800 * 59.99871 * 8 7 6 35 35 H 1.09000 * 109.47342 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.46915 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47518 * 299.99752 * 9 8 7 38 38 H 1.09002 * 109.47406 * 300.00565 * 10 5 4 39 39 H 1.09004 * 109.46571 * 60.00146 * 10 5 4 40 40 H 0.96997 * 119.99954 * 359.97438 * 13 11 2 41 41 H 1.09006 * 109.46985 * 295.75406 * 14 13 11 42 42 H 1.08996 * 109.47823 * 55.75809 * 14 13 11 43 43 H 0.97001 * 119.99626 * 185.02094 * 19 18 16 44 44 H 1.09001 * 117.49680 * 0.02562 * 24 15 14 45 45 H 1.08999 * 117.49366 * 145.01725 * 24 15 14 46 46 H 1.09005 * 117.49312 * 214.97995 * 25 15 14 47 47 H 1.08999 * 117.49894 * 359.96715 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.3288 0.1994 2.2512 6 6 3.5614 -0.3325 2.9850 7 6 3.9061 0.6019 4.1464 8 6 2.7244 0.6681 5.1160 9 6 1.4918 1.2000 4.3820 10 6 1.1471 0.2661 3.2208 11 6 2.0324 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1941 -2.4520 14 6 2.2798 -0.8850 -3.6482 15 6 1.7856 -0.1526 -4.8973 16 6 2.2732 1.2644 -5.0556 17 1 1.6655 2.0867 -4.7080 18 6 3.4955 1.5112 -5.6442 19 7 4.2171 0.5128 -6.1046 20 14 4.1263 3.2636 -5.7874 21 1 4.9187 3.6047 -4.5787 22 1 4.9856 3.3834 -6.9926 23 1 2.9763 4.1957 -5.9047 24 6 0.3736 -0.4732 -5.3919 25 6 1.5908 -0.9791 -6.1701 26 1 -0.3632 0.4321 0.9325 27 1 -0.3633 0.5915 -0.8403 28 1 -0.3633 -1.0235 -0.0920 29 1 2.5384 1.1968 1.8646 30 1 4.4032 -0.3800 2.2942 31 1 3.3518 -1.3298 3.3716 32 1 4.1155 1.5996 3.7603 33 1 4.7841 0.2228 4.6695 34 1 2.5150 -0.3295 5.5021 35 1 2.9699 1.3342 5.9431 36 1 0.6498 1.2467 5.0726 37 1 1.7012 2.1975 3.9959 38 1 0.2690 0.6450 2.6979 39 1 0.9376 -0.7313 3.6073 40 1 1.2952 0.6344 -2.5391 41 1 3.3698 -0.8972 -3.6416 42 1 1.9051 -1.9085 -3.6550 43 1 5.1075 0.6779 -6.4523 44 1 -0.2032 -1.2056 -4.8272 45 1 -0.2023 0.3408 -5.8321 46 1 1.8152 -0.4977 -7.1220 47 1 1.8153 -2.0444 -6.1177 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325062058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:28 Heat of formation + Delta-G solvation = -88.622919 kcal Electronic energy + Delta-G solvation = -24445.653335 eV Core-core repulsion = 21014.031440 eV Total energy + Delta-G solvation = -3431.621896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77881 -38.68070 -36.85790 -36.18067 -33.38536 -32.00315 -31.53308 -30.90511 -29.38097 -26.49552 -25.34205 -23.64508 -22.76506 -22.27086 -21.16760 -20.19586 -19.64280 -19.25276 -17.04124 -16.97229 -15.92009 -15.69740 -15.08390 -14.76205 -14.69069 -14.47338 -14.39506 -13.93518 -13.81051 -13.20788 -13.03261 -12.83932 -12.71192 -12.63372 -12.42734 -12.11758 -11.76210 -11.62626 -11.40238 -11.31456 -11.12883 -11.02031 -10.95051 -10.79688 -10.58901 -10.54957 -10.47273 -10.25319 -9.65922 -9.56165 -9.06326 -9.01002 -8.51182 -8.26621 -8.07655 -6.10393 -4.20019 3.19207 3.23660 3.26126 3.31817 3.32492 4.13786 4.33310 4.52483 4.54701 4.74549 4.94563 4.99136 5.04216 5.11487 5.14084 5.18414 5.25693 5.30080 5.30514 5.37502 5.43183 5.53126 5.65417 5.72853 5.81916 5.83543 5.93009 5.97806 6.00026 6.02834 6.15224 6.20106 6.21588 6.32732 6.47093 6.55438 6.69690 6.86782 7.10808 7.19328 7.32931 7.38655 7.51906 7.77949 8.29708 8.31494 8.81354 8.89230 9.47496 10.97643 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003501 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.731082 B = 7996.322099 C = 8701.040120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 H 0.083 0.917 4 O -0.349 6.349 5 C 0.088 3.912 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.118 4.118 10 C -0.140 4.140 11 C 0.502 3.498 12 O -0.538 6.538 13 N -0.701 5.701 14 C 0.165 3.835 15 C 0.025 3.975 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.211 4.211 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 2.544 18.062 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 H 0.101 0.899 4 O -0.267 6.267 5 C 0.030 3.970 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.178 4.178 11 C 0.286 3.714 12 O -0.415 6.415 13 N -0.351 5.351 14 C 0.042 3.958 15 C 0.024 3.976 16 C -0.538 4.538 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.248 4.248 25 C -0.181 4.181 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.158 1.541 17.972 18.761 hybrid contribution 0.208 1.583 -0.259 1.618 sum -4.950 3.124 17.713 18.655 Atomic orbital electron populations 1.22277 0.93805 1.03584 1.02849 1.22063 0.94997 0.96068 0.85942 0.89877 1.88050 1.84877 1.32659 1.21103 1.22274 0.94300 0.93194 0.87261 1.21636 0.97171 0.99867 0.97065 1.21517 0.98002 0.99848 0.96087 1.21577 0.95096 1.01389 0.97878 1.21500 0.97923 0.98994 0.97106 1.22104 0.98282 1.00753 0.96613 1.20346 0.80656 0.85929 0.84503 1.90671 1.40504 1.23739 1.86597 1.45916 1.56437 1.27495 1.05292 1.20973 0.99199 0.92791 0.82837 1.19032 0.92437 0.95577 0.90543 1.20351 1.03803 0.89621 1.40019 0.92220 1.24989 0.97084 0.96836 0.94141 1.69994 1.10323 1.30831 1.39804 0.86645 0.78963 0.85061 0.77673 1.20640 1.21188 1.19821 1.23028 0.92218 1.02727 1.06857 1.22473 1.00411 0.97378 0.97880 0.91456 0.90829 0.91350 0.92072 0.91085 0.91058 0.91884 0.91513 0.91829 0.92026 0.91786 0.91945 0.91544 0.91089 0.76568 0.91420 0.94230 0.92850 0.91683 0.90398 0.89577 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.52 37.16 0.35 -1.63 16 2 C 0.07 1.04 3.17 -27.88 -0.09 0.96 16 3 H 0.08 1.07 7.21 -51.93 -0.37 0.69 16 4 O -0.35 -5.43 9.16 -55.09 -0.50 -5.93 16 5 C 0.09 1.04 2.66 -26.73 -0.07 0.96 16 6 C -0.12 -1.34 5.57 -26.73 -0.15 -1.49 16 7 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 8 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 9 C -0.12 -0.92 5.92 -26.76 -0.16 -1.08 16 10 C -0.14 -1.35 5.56 -26.76 -0.15 -1.50 16 11 C 0.50 9.71 7.18 -10.99 -0.08 9.64 16 12 O -0.54 -12.73 16.51 -14.31 -0.24 -12.97 16 13 N -0.70 -13.59 5.42 -60.29 -0.33 -13.92 16 14 C 0.16 3.75 5.51 -4.04 -0.02 3.72 16 15 C 0.02 0.58 1.48 -155.66 -0.23 0.35 16 16 C -0.50 -12.66 8.47 -34.44 -0.29 -12.95 16 17 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 18 C 0.07 1.93 5.42 -17.82 -0.10 1.84 16 19 N -0.87 -24.08 12.70 55.43 0.70 -23.37 16 20 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 25 C -0.14 -3.28 9.22 -26.69 -0.25 -3.52 16 26 H 0.07 0.66 6.20 -51.93 -0.32 0.34 16 27 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.68 7.21 -51.93 -0.37 0.31 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.61 6.22 -51.93 -0.32 0.28 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 6.97 8.15 -40.82 -0.33 6.64 16 41 H 0.07 1.76 8.14 -51.93 -0.42 1.33 16 42 H 0.04 0.90 8.11 -51.93 -0.42 0.47 16 43 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -30.10 375.54 -9.99 -40.09 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.45 Total: 6.80 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.81 Total: -11.60 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.38 Total: -37.29 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.74 Total: -18.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.10 -9.99 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325062058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.536 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds