Wall clock time and date at job start Tue Mar 31 2020 07:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47246 * 2 1 4 4 O 1.42902 * 109.46940 * 120.00128 * 2 1 3 5 5 C 1.42900 * 114.00133 * 264.00051 * 4 2 1 6 6 C 1.52997 * 109.47039 * 216.93415 * 5 4 2 7 7 C 1.53002 * 109.46892 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47498 * 59.99637 * 7 6 5 9 9 C 1.52999 * 109.46824 * 300.00089 * 8 7 6 10 10 C 1.52999 * 109.47170 * 96.92728 * 5 4 2 11 11 C 1.50699 * 109.47098 * 240.00135 * 2 1 3 12 12 O 1.21283 * 119.99871 * 245.00512 * 11 2 1 13 13 N 1.34776 * 120.00012 * 64.99902 * 11 2 1 14 14 C 1.46497 * 119.99856 * 180.02562 * 13 11 2 15 15 C 1.53007 * 109.46880 * 175.76377 * 14 13 11 16 16 C 1.50689 * 115.55245 * 62.42815 * 15 14 13 17 17 H 1.08003 * 120.00390 * 265.02026 * 16 15 14 18 18 C 1.37885 * 120.00073 * 85.02170 * 16 15 14 19 19 N 1.31512 * 119.99791 * 2.09494 * 18 16 15 20 20 Si 1.86801 * 119.99923 * 182.10095 * 18 16 15 21 21 H 1.48500 * 109.47029 * 90.00041 * 20 18 16 22 22 H 1.48507 * 109.46676 * 209.99659 * 20 18 16 23 23 H 1.48493 * 109.47240 * 329.99640 * 20 18 16 24 24 C 1.53005 * 117.49458 * 276.75584 * 15 14 13 25 25 C 1.53005 * 117.49457 * 208.10327 * 15 14 13 26 26 H 1.09002 * 109.46596 * 294.86210 * 1 2 3 27 27 H 1.08992 * 109.46922 * 54.85983 * 1 2 3 28 28 H 1.08999 * 109.47041 * 174.86489 * 1 2 3 29 29 H 1.09004 * 109.47056 * 336.92777 * 5 4 2 30 30 H 1.08998 * 109.47436 * 59.99854 * 6 5 4 31 31 H 1.08997 * 109.46939 * 299.99346 * 6 5 4 32 32 H 1.09004 * 109.47200 * 299.99754 * 7 6 5 33 33 H 1.09002 * 109.47270 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.46800 * 59.99871 * 8 7 6 35 35 H 1.09000 * 109.47342 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.46915 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47518 * 299.99752 * 9 8 7 38 38 H 1.09002 * 109.47406 * 300.00565 * 10 5 4 39 39 H 1.09004 * 109.46571 * 60.00146 * 10 5 4 40 40 H 0.96997 * 119.99954 * 359.97438 * 13 11 2 41 41 H 1.09006 * 109.46985 * 295.75406 * 14 13 11 42 42 H 1.08996 * 109.47823 * 55.75809 * 14 13 11 43 43 H 0.97001 * 119.99626 * 185.02094 * 19 18 16 44 44 H 1.09001 * 117.49680 * 0.02562 * 24 15 14 45 45 H 1.08999 * 117.49366 * 145.01725 * 24 15 14 46 46 H 1.09005 * 117.49312 * 214.97995 * 25 15 14 47 47 H 1.08999 * 117.49894 * 359.96715 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.3288 0.1994 2.2512 6 6 3.5614 -0.3325 2.9850 7 6 3.9061 0.6019 4.1464 8 6 2.7244 0.6681 5.1160 9 6 1.4918 1.2000 4.3820 10 6 1.1471 0.2661 3.2208 11 6 2.0324 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1941 -2.4520 14 6 2.2798 -0.8850 -3.6482 15 6 1.7856 -0.1526 -4.8973 16 6 2.2732 1.2644 -5.0556 17 1 1.6655 2.0867 -4.7080 18 6 3.4955 1.5112 -5.6442 19 7 4.2171 0.5128 -6.1046 20 14 4.1263 3.2636 -5.7874 21 1 4.9187 3.6047 -4.5787 22 1 4.9856 3.3834 -6.9926 23 1 2.9763 4.1957 -5.9047 24 6 0.3736 -0.4732 -5.3919 25 6 1.5908 -0.9791 -6.1701 26 1 -0.3632 0.4321 0.9325 27 1 -0.3633 0.5915 -0.8403 28 1 -0.3633 -1.0235 -0.0920 29 1 2.5384 1.1968 1.8646 30 1 4.4032 -0.3800 2.2942 31 1 3.3518 -1.3298 3.3716 32 1 4.1155 1.5996 3.7603 33 1 4.7841 0.2228 4.6695 34 1 2.5150 -0.3295 5.5021 35 1 2.9699 1.3342 5.9431 36 1 0.6498 1.2467 5.0726 37 1 1.7012 2.1975 3.9959 38 1 0.2690 0.6450 2.6979 39 1 0.9376 -0.7313 3.6073 40 1 1.2952 0.6344 -2.5391 41 1 3.3698 -0.8972 -3.6416 42 1 1.9051 -1.9085 -3.6550 43 1 5.1075 0.6779 -6.4523 44 1 -0.2032 -1.2056 -4.8272 45 1 -0.2023 0.3408 -5.8321 46 1 1.8152 -0.4977 -7.1220 47 1 1.8153 -2.0444 -6.1177 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325062058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:27 Heat of formation + Delta-G solvation = -105.076208 kcal Electronic energy + Delta-G solvation = -24446.366803 eV Core-core repulsion = 21014.031440 eV Total energy + Delta-G solvation = -3432.335364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07395 -39.87343 -38.49314 -37.32818 -35.06405 -33.96887 -32.61117 -31.65821 -30.23761 -28.21903 -27.21753 -24.89232 -23.49445 -23.13045 -22.91878 -21.44453 -21.16401 -20.60662 -18.58444 -18.11593 -17.62481 -16.89165 -16.65511 -16.25772 -16.08842 -15.63036 -15.54192 -15.14568 -14.88425 -14.59443 -14.44895 -14.03447 -13.74935 -13.69090 -13.48101 -13.45496 -13.30568 -12.94534 -12.90452 -12.81541 -12.44288 -12.34306 -12.05736 -12.02742 -11.93590 -11.55516 -11.43760 -11.41685 -11.28056 -10.94484 -10.76730 -10.44127 -10.36311 -10.01823 -9.85362 -8.09778 -6.23794 1.43277 1.45628 1.53759 1.66292 1.98312 2.43201 2.90935 3.19434 3.48722 3.75751 3.78050 3.82209 3.97174 4.06756 4.09702 4.23634 4.25654 4.32023 4.35997 4.54070 4.56814 4.57777 4.63926 4.64956 4.71346 4.73271 4.83623 4.96295 4.99432 5.02371 5.06583 5.12311 5.20640 5.23637 5.26337 5.28135 5.35290 5.41805 5.52152 5.54097 5.58675 5.68726 5.77517 6.22736 6.36379 6.75592 6.85323 7.35203 7.46647 8.98135 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003501 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.731082 B = 7996.322099 C = 8701.040120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.078 3.922 3 H 0.107 0.893 4 O -0.379 6.379 5 C 0.080 3.920 6 C -0.122 4.122 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.496 3.504 12 O -0.589 6.589 13 N -0.692 5.692 14 C 0.180 3.820 15 C 0.005 3.995 16 C -0.503 4.503 17 H 0.068 0.932 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.260 1.260 24 C -0.175 4.175 25 C -0.157 4.157 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.412 0.588 41 H 0.024 0.976 42 H 0.035 0.965 43 H 0.258 0.742 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 4.772 19.832 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.124 0.876 4 O -0.298 6.298 5 C 0.023 3.977 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.158 4.158 9 C -0.152 4.152 10 C -0.172 4.172 11 C 0.283 3.717 12 O -0.469 6.469 13 N -0.343 5.343 14 C 0.056 3.944 15 C 0.004 3.996 16 C -0.540 4.540 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.776 3.224 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.184 1.184 24 C -0.213 4.213 25 C -0.195 4.195 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.112 3.807 19.758 21.341 hybrid contribution 0.824 0.833 -0.800 1.419 sum -6.288 4.641 18.958 20.505 Atomic orbital electron populations 1.22265 0.91119 1.03359 1.05003 1.22088 0.96790 0.95926 0.83521 0.87551 1.88027 1.85279 1.34507 1.21963 1.22528 0.95403 0.92952 0.86789 1.21668 0.96418 1.00246 0.97641 1.21504 0.98890 0.99302 0.95297 1.21585 0.94524 1.01745 0.97977 1.21508 0.98432 0.98691 0.96567 1.22054 0.97481 1.00904 0.96752 1.21324 0.79359 0.85368 0.85660 1.90642 1.42735 1.26195 1.87362 1.45775 1.56235 1.27695 1.04622 1.20551 0.96569 0.93059 0.84256 1.19053 0.94883 0.95004 0.90659 1.20694 1.03692 0.90746 1.38910 0.91394 1.25734 0.97628 1.00162 0.94231 1.70130 1.10493 1.32773 1.41270 0.85679 0.78519 0.81093 0.77112 1.20583 1.21849 1.18438 1.23016 0.90897 1.02672 1.04668 1.22398 1.02781 0.97382 0.96965 0.88811 0.89210 0.92695 0.91155 0.93255 0.92092 0.91345 0.90884 0.92086 0.90372 0.90320 0.91214 0.90618 0.92020 0.75107 0.95713 0.94633 0.93318 0.89407 0.89400 0.91692 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.52 71.98 0.69 -2.68 16 2 C 0.08 2.18 3.17 29.85 0.09 2.27 16 3 H 0.11 2.46 7.21 -2.39 -0.02 2.45 16 4 O -0.38 -11.60 9.16 -129.99 -1.19 -12.79 16 5 C 0.08 1.80 2.66 30.59 0.08 1.88 16 6 C -0.12 -2.72 5.57 30.59 0.17 -2.55 16 7 C -0.11 -1.77 5.92 30.60 0.18 -1.59 16 8 C -0.12 -1.56 5.92 30.59 0.18 -1.37 16 9 C -0.11 -1.44 5.92 30.58 0.18 -1.26 16 10 C -0.13 -2.28 5.56 30.58 0.17 -2.11 16 11 C 0.50 19.24 7.18 87.66 0.63 19.87 16 12 O -0.59 -28.80 16.51 15.95 0.26 -28.53 16 13 N -0.69 -26.54 5.42 -463.05 -2.51 -29.05 16 14 C 0.18 8.32 5.51 86.38 0.48 8.80 16 15 C 0.00 0.22 1.48 -52.93 -0.08 0.14 16 16 C -0.50 -25.08 8.47 25.60 0.22 -24.87 16 17 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 18 C 0.02 1.20 5.42 84.66 0.46 1.66 16 19 N -0.91 -51.29 12.70 21.45 0.27 -51.02 16 20 Si 0.95 41.46 29.54 68.60 2.03 43.48 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 C -0.18 -6.91 9.96 30.62 0.30 -6.60 16 25 C -0.16 -7.20 9.22 30.62 0.28 -6.92 16 26 H 0.09 1.49 6.20 -2.39 -0.01 1.48 16 27 H 0.09 1.59 8.05 -2.39 -0.02 1.58 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.42 7.21 -2.38 -0.02 1.40 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.14 6.22 -2.39 -0.01 1.12 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.41 13.65 8.15 -92.71 -0.76 12.90 16 41 H 0.02 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.04 1.65 8.11 -2.39 -0.02 1.63 16 43 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 44 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 45 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.06 3.23 8.14 -2.38 -0.02 3.21 16 47 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.78 375.54 3.07 -63.71 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.18 Total: 29.53 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.03 Total: -15.33 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -2.24 Total: -80.07 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.93 Total: -41.32 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -66.78 3.07 -63.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325062058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.367 kcal (2) G-P(sol) polarization free energy of solvation -66.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds