Wall clock time and date at job start Tue Mar 31 2020 07:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00093 * 2 1 4 4 N 1.46501 * 109.46946 * 125.00208 * 3 2 1 5 5 C 1.46510 * 119.99527 * 274.85575 * 4 3 2 6 6 C 1.50695 * 109.46800 * 270.00090 * 5 4 3 7 7 H 1.07993 * 120.00708 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99460 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00154 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99698 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46997 * 90.00399 * 10 8 6 12 12 H 1.48503 * 109.46850 * 210.00209 * 10 8 6 13 13 H 1.48497 * 109.47273 * 329.99925 * 10 8 6 14 14 C 1.34768 * 120.00307 * 94.85683 * 4 3 2 15 15 O 1.21285 * 120.00073 * 184.68653 * 14 4 3 16 16 C 1.50696 * 120.00237 * 4.69176 * 14 4 3 17 17 H 1.09001 * 109.46779 * 313.22593 * 16 14 4 18 18 C 1.52998 * 109.47490 * 73.22651 * 16 14 4 19 19 O 1.42901 * 109.47333 * 193.23121 * 16 14 4 20 20 C 1.42898 * 114.00460 * 151.36458 * 19 16 14 21 21 C 1.52995 * 109.47428 * 152.24721 * 20 19 16 22 22 C 1.53002 * 109.47383 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47142 * 300.00114 * 22 21 20 24 24 C 1.53002 * 109.46674 * 59.99933 * 23 22 21 25 25 C 1.52996 * 109.47439 * 272.25058 * 20 19 16 26 26 H 1.08001 * 120.00343 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99733 * 179.97438 * 2 1 3 29 29 H 1.08990 * 109.47163 * 5.00164 * 3 2 1 30 30 H 1.09003 * 109.46700 * 244.99631 * 3 2 1 31 31 H 1.08997 * 109.47133 * 30.00554 * 5 4 3 32 32 H 1.08999 * 109.46715 * 150.00285 * 5 4 3 33 33 H 0.97006 * 120.00229 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.47219 * 182.08023 * 18 16 14 35 35 H 1.08995 * 109.46903 * 302.08141 * 18 16 14 36 36 H 1.09000 * 109.46905 * 62.08004 * 18 16 14 37 37 H 1.09005 * 109.46886 * 32.24420 * 20 19 16 38 38 H 1.09000 * 109.47376 * 60.00462 * 21 20 19 39 39 H 1.08997 * 109.47433 * 300.00052 * 21 20 19 40 40 H 1.09001 * 109.47243 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47062 * 59.99618 * 22 21 20 42 42 H 1.09000 * 109.46787 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.46872 * 300.00164 * 23 22 21 44 44 H 1.08995 * 109.47326 * 59.99993 * 24 23 22 45 45 H 1.09002 * 109.46980 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.47059 * 59.99643 * 25 20 19 47 47 H 1.09002 * 109.47413 * 299.99871 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5291 1.7650 2.4516 6 6 2.7175 3.2541 2.5867 7 1 3.1413 3.8210 1.7710 8 6 2.3488 3.8927 3.7517 9 7 1.8332 3.2023 4.7452 10 14 2.5829 5.7383 3.9194 11 1 1.3625 6.4374 3.4429 12 1 2.8241 6.0791 5.3446 13 1 3.7483 6.1656 3.1043 14 6 4.2769 0.9579 0.9578 15 8 5.0254 0.8985 1.9103 16 6 4.7817 0.6139 -0.4197 17 1 4.0719 -0.0517 -0.9110 18 6 4.9330 1.8950 -1.2423 19 8 6.0496 -0.0367 -0.3137 20 6 6.3257 -0.9491 -1.3783 21 6 7.8385 -1.0513 -1.5829 22 6 8.1340 -2.0277 -2.7232 23 6 7.5725 -3.4070 -2.3721 24 6 6.0597 -3.3046 -2.1675 25 6 5.7643 -2.3282 -1.0266 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 1.4728 1.5208 2.5632 32 1 3.1037 1.2545 3.2245 33 1 1.5741 3.6515 5.5650 34 1 5.2628 1.6429 -2.2500 35 1 3.9738 2.4102 -1.2921 36 1 5.6703 2.5447 -0.7705 37 1 5.8584 -0.5896 -2.2951 38 1 8.3057 -1.4108 -0.6661 39 1 8.2385 -0.0689 -1.8336 40 1 9.2118 -2.1009 -2.8687 41 1 7.6668 -1.6679 -3.6400 42 1 7.7827 -4.1024 -3.1847 43 1 8.0396 -3.7668 -1.4553 44 1 5.5925 -2.9448 -3.0842 45 1 5.6595 -4.2873 -1.9178 46 1 4.6865 -2.2553 -0.8808 47 1 6.2314 -2.6877 -0.1097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344081373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:36 Heat of formation + Delta-G solvation = -80.561905 kcal Electronic energy + Delta-G solvation = -24937.104160 eV Core-core repulsion = 21505.831816 eV Total energy + Delta-G solvation = -3431.272344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79905 -38.66702 -36.41423 -35.57406 -33.17389 -32.23945 -31.36677 -30.92866 -29.31494 -27.50839 -25.63144 -24.24626 -22.83221 -22.56411 -21.67197 -20.04560 -19.89138 -18.54075 -17.14759 -16.49071 -16.34161 -15.63064 -15.12626 -14.95453 -14.60475 -14.51909 -14.34053 -14.10077 -13.76583 -13.38538 -13.07932 -12.90627 -12.57505 -12.38713 -12.26992 -12.08884 -11.96652 -11.70380 -11.42120 -11.27587 -11.26099 -11.08249 -10.99591 -10.86777 -10.72566 -10.66698 -10.57048 -10.33018 -10.16335 -9.62754 -9.44204 -9.17647 -8.69175 -8.41666 -7.66920 -6.02371 -4.07254 2.43474 3.30942 3.36628 3.38730 3.41382 3.45514 4.23102 4.46453 4.56288 4.57811 4.79432 4.92741 5.01750 5.06701 5.11708 5.16765 5.21887 5.29231 5.31862 5.32649 5.39929 5.40491 5.43724 5.54379 5.59056 5.72076 5.80523 5.82642 5.89933 5.95720 6.00641 6.03016 6.05157 6.16823 6.18589 6.26166 6.32012 6.78775 6.90065 7.06139 7.35691 7.48571 7.58245 7.94521 8.25305 8.41303 8.92164 9.11591 9.57707 11.05705 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003873 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.340503 B = 7228.235748 C = 7970.758142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C 0.128 3.872 4 N -0.592 5.592 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.510 3.490 15 O -0.520 6.520 16 C 0.070 3.930 17 H 0.075 0.925 18 C -0.172 4.172 19 O -0.350 6.350 20 C 0.088 3.912 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.145 4.145 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -10.911 -18.329 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.188 4.188 3 C 0.004 3.996 4 N -0.325 5.325 5 C 0.130 3.870 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.295 3.705 15 O -0.395 6.395 16 C 0.009 3.991 17 H 0.093 0.907 18 C -0.229 4.229 19 O -0.268 6.268 20 C 0.030 3.970 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.182 4.182 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.273 -10.874 -17.438 21.216 hybrid contribution -0.280 0.937 -0.008 0.978 sum 4.992 -9.937 -17.446 20.689 Atomic orbital electron populations 1.23815 0.95797 1.01788 1.00407 1.23406 0.96435 0.98952 1.00052 1.20755 0.93345 0.95488 0.89988 1.48157 1.07760 1.64492 1.12111 1.19274 0.95160 0.94883 0.77728 1.21441 1.41737 0.92728 1.00728 0.92418 1.24933 0.95094 0.98555 0.95489 1.69936 1.42409 1.35793 1.05114 0.86507 0.78411 0.85159 0.77409 1.20668 1.21087 1.19863 1.20042 0.82587 0.78404 0.89512 1.90681 1.55232 1.51531 1.42009 1.22007 0.86733 0.94880 0.95521 0.90708 1.22287 1.03738 0.97448 0.99444 1.88108 1.34285 1.57607 1.46761 1.22143 0.96080 0.88951 0.89832 1.21554 0.94382 0.99975 0.99368 1.21505 1.00822 0.94950 0.98019 1.21581 0.95814 0.96994 1.01605 1.21498 0.96181 0.99249 0.98422 1.22098 1.01246 0.95509 0.99387 0.88772 0.88223 0.87928 0.89447 0.90383 0.94869 0.93800 0.92728 0.91975 0.90542 0.90902 0.92426 0.90913 0.91244 0.91528 0.91967 0.92034 0.91740 0.92052 0.91785 0.91915 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.32 29.02 0.42 -1.93 16 2 C -0.17 -2.44 9.84 -36.02 -0.35 -2.79 16 3 C 0.13 2.08 5.30 -5.19 -0.03 2.05 16 4 N -0.59 -12.72 2.44 -176.44 -0.43 -13.16 16 5 C 0.25 6.60 5.22 -5.19 -0.03 6.57 16 6 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 10 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.51 11.18 6.98 -10.99 -0.08 11.10 16 15 O -0.52 -14.07 16.11 -14.00 -0.23 -14.29 16 16 C 0.07 1.15 2.06 -27.89 -0.06 1.09 16 17 H 0.08 1.03 6.60 -51.93 -0.34 0.69 16 18 C -0.17 -2.41 9.11 37.16 0.34 -2.07 16 19 O -0.35 -5.93 9.21 -54.79 -0.50 -6.43 16 20 C 0.09 1.08 2.40 -26.74 -0.06 1.02 16 21 C -0.12 -1.25 5.57 -26.73 -0.15 -1.39 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 23 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 24 C -0.12 -1.00 5.92 -26.71 -0.16 -1.16 16 25 C -0.14 -1.65 5.48 -26.71 -0.15 -1.80 16 26 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 28 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.09 1.46 7.76 -51.93 -0.40 1.05 16 30 H 0.08 1.04 4.44 -51.93 -0.23 0.81 16 31 H 0.03 0.89 8.07 -51.93 -0.42 0.48 16 32 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 35 H 0.08 1.02 6.10 -51.93 -0.32 0.70 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -33.79 375.72 -9.15 -42.94 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.32 Total: -0.37 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.04 Total: -5.25 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.31 Total: -39.22 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.73 Total: -20.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.79 -9.15 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344081373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.624 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds