Wall clock time and date at job start Tue Mar 31 2020 07:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00093 * 2 1 4 4 N 1.46501 * 109.46946 * 125.00208 * 3 2 1 5 5 C 1.46510 * 119.99527 * 274.85575 * 4 3 2 6 6 C 1.50695 * 109.46800 * 270.00090 * 5 4 3 7 7 H 1.07993 * 120.00708 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99460 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00154 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99698 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46997 * 90.00399 * 10 8 6 12 12 H 1.48503 * 109.46850 * 210.00209 * 10 8 6 13 13 H 1.48497 * 109.47273 * 329.99925 * 10 8 6 14 14 C 1.34768 * 120.00307 * 94.85683 * 4 3 2 15 15 O 1.21285 * 120.00073 * 184.68653 * 14 4 3 16 16 C 1.50696 * 120.00237 * 4.69176 * 14 4 3 17 17 H 1.09001 * 109.46779 * 313.22593 * 16 14 4 18 18 C 1.52998 * 109.47490 * 73.22651 * 16 14 4 19 19 O 1.42901 * 109.47333 * 193.23121 * 16 14 4 20 20 C 1.42898 * 114.00460 * 151.36458 * 19 16 14 21 21 C 1.52995 * 109.47428 * 152.24721 * 20 19 16 22 22 C 1.53002 * 109.47383 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47142 * 300.00114 * 22 21 20 24 24 C 1.53002 * 109.46674 * 59.99933 * 23 22 21 25 25 C 1.52996 * 109.47439 * 272.25058 * 20 19 16 26 26 H 1.08001 * 120.00343 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99733 * 179.97438 * 2 1 3 29 29 H 1.08990 * 109.47163 * 5.00164 * 3 2 1 30 30 H 1.09003 * 109.46700 * 244.99631 * 3 2 1 31 31 H 1.08997 * 109.47133 * 30.00554 * 5 4 3 32 32 H 1.08999 * 109.46715 * 150.00285 * 5 4 3 33 33 H 0.97006 * 120.00229 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.47219 * 182.08023 * 18 16 14 35 35 H 1.08995 * 109.46903 * 302.08141 * 18 16 14 36 36 H 1.09000 * 109.46905 * 62.08004 * 18 16 14 37 37 H 1.09005 * 109.46886 * 32.24420 * 20 19 16 38 38 H 1.09000 * 109.47376 * 60.00462 * 21 20 19 39 39 H 1.08997 * 109.47433 * 300.00052 * 21 20 19 40 40 H 1.09001 * 109.47243 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47062 * 59.99618 * 22 21 20 42 42 H 1.09000 * 109.46787 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.46872 * 300.00164 * 23 22 21 44 44 H 1.08995 * 109.47326 * 59.99993 * 24 23 22 45 45 H 1.09002 * 109.46980 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.47059 * 59.99643 * 25 20 19 47 47 H 1.09002 * 109.47413 * 299.99871 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5291 1.7650 2.4516 6 6 2.7175 3.2541 2.5867 7 1 3.1413 3.8210 1.7710 8 6 2.3488 3.8927 3.7517 9 7 1.8332 3.2023 4.7452 10 14 2.5829 5.7383 3.9194 11 1 1.3625 6.4374 3.4429 12 1 2.8241 6.0791 5.3446 13 1 3.7483 6.1656 3.1043 14 6 4.2769 0.9579 0.9578 15 8 5.0254 0.8985 1.9103 16 6 4.7817 0.6139 -0.4197 17 1 4.0719 -0.0517 -0.9110 18 6 4.9330 1.8950 -1.2423 19 8 6.0496 -0.0367 -0.3137 20 6 6.3257 -0.9491 -1.3783 21 6 7.8385 -1.0513 -1.5829 22 6 8.1340 -2.0277 -2.7232 23 6 7.5725 -3.4070 -2.3721 24 6 6.0597 -3.3046 -2.1675 25 6 5.7643 -2.3282 -1.0266 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 1.4728 1.5208 2.5632 32 1 3.1037 1.2545 3.2245 33 1 1.5741 3.6515 5.5650 34 1 5.2628 1.6429 -2.2500 35 1 3.9738 2.4102 -1.2921 36 1 5.6703 2.5447 -0.7705 37 1 5.8584 -0.5896 -2.2951 38 1 8.3057 -1.4108 -0.6661 39 1 8.2385 -0.0689 -1.8336 40 1 9.2118 -2.1009 -2.8687 41 1 7.6668 -1.6679 -3.6400 42 1 7.7827 -4.1024 -3.1847 43 1 8.0396 -3.7668 -1.4553 44 1 5.5925 -2.9448 -3.0842 45 1 5.6595 -4.2873 -1.9178 46 1 4.6865 -2.2553 -0.8808 47 1 6.2314 -2.6877 -0.1097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344081373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:35 Heat of formation + Delta-G solvation = -99.995451 kcal Electronic energy + Delta-G solvation = -24937.946861 eV Core-core repulsion = 21505.831816 eV Total energy + Delta-G solvation = -3432.115046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22533 -39.86158 -37.53962 -37.16490 -35.13459 -33.75602 -32.71102 -31.69826 -30.28333 -29.40990 -27.05883 -25.90111 -24.21677 -23.45479 -22.80850 -21.13199 -20.86240 -20.05148 -18.62811 -18.39831 -17.85255 -17.01897 -16.52303 -16.35907 -15.99230 -15.84938 -15.45126 -15.13319 -14.81487 -14.60448 -14.39175 -14.19081 -14.07303 -13.68005 -13.34352 -13.33859 -13.19129 -13.13891 -12.92965 -12.86785 -12.60865 -12.53097 -12.26643 -12.23014 -12.04809 -11.90464 -11.68559 -11.51152 -11.46932 -11.18688 -10.65003 -10.59944 -10.32398 -10.29891 -9.50892 -8.23099 -6.38177 1.28443 1.35897 1.39553 1.49635 1.73443 2.07009 2.38306 2.92140 3.06724 3.55624 3.78584 3.78999 3.84681 4.01943 4.05945 4.10320 4.23398 4.25254 4.29653 4.31918 4.36737 4.56434 4.59037 4.62756 4.67114 4.73450 4.82033 4.97197 4.98156 5.04147 5.08586 5.12037 5.18394 5.21498 5.23904 5.25221 5.31277 5.40370 5.49239 5.52831 5.69672 5.74237 5.92894 6.04853 6.24483 6.68516 6.73528 7.26268 7.42976 8.84452 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003873 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.340503 B = 7228.235748 C = 7970.758142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.124 3.876 4 N -0.593 5.593 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.588 6.588 16 C 0.083 3.917 17 H 0.108 0.892 18 C -0.167 4.167 19 O -0.384 6.384 20 C 0.081 3.919 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.110 4.110 25 C -0.145 4.145 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.024 0.976 32 H -0.008 1.008 33 H 0.267 0.733 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -10.776 -21.810 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.002 3.998 4 N -0.325 5.325 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.197 1.197 14 C 0.285 3.715 15 O -0.468 6.468 16 C 0.022 3.978 17 H 0.125 0.875 18 C -0.224 4.224 19 O -0.304 6.304 20 C 0.024 3.976 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.183 4.183 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.042 0.958 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.690 -10.753 -20.981 24.038 hybrid contribution -0.142 0.822 1.103 1.383 sum 4.548 -9.931 -19.877 22.681 Atomic orbital electron populations 1.24061 0.95394 1.03013 0.97710 1.23302 0.96932 0.98143 1.02432 1.21053 0.92908 0.96595 0.89208 1.48135 1.08872 1.63718 1.11739 1.18695 0.93552 0.93810 0.79543 1.21711 1.41876 0.93593 1.01079 0.92529 1.25886 0.94508 1.03797 0.94988 1.70063 1.43098 1.37949 1.05685 0.85394 0.78971 0.78929 0.77391 1.18523 1.20768 1.19706 1.21213 0.81948 0.76938 0.91413 1.90634 1.56928 1.54472 1.44718 1.21911 0.87424 0.96792 0.91650 0.87465 1.22297 1.03681 0.95680 1.00751 1.88091 1.34325 1.58720 1.49214 1.22466 0.97219 0.88421 0.89488 1.21594 0.93312 1.00750 0.99688 1.21493 1.01775 0.94122 0.97224 1.21603 0.95205 0.97350 1.01893 1.21487 0.96851 0.98698 0.97731 1.22102 1.00602 0.95952 0.99665 0.86525 0.88024 0.87254 0.89981 0.86958 0.95788 0.98986 0.92405 0.87859 0.89669 0.93309 0.89823 0.93031 0.91344 0.90432 0.90325 0.89980 0.92852 0.90325 0.91162 0.92360 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 14.32 67.78 0.97 -2.95 16 2 C -0.19 -5.15 9.84 25.65 0.25 -4.90 16 3 C 0.12 3.90 5.30 85.63 0.45 4.35 16 4 N -0.59 -26.18 2.44 -830.51 -2.03 -28.21 16 5 C 0.27 14.82 5.22 85.63 0.45 15.27 16 6 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 7 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 8 C 0.01 0.42 5.46 84.66 0.46 0.88 16 9 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 10 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.50 22.56 6.98 87.66 0.61 23.17 16 15 O -0.59 -33.97 16.11 15.65 0.25 -33.72 16 16 C 0.08 2.65 2.06 29.85 0.06 2.72 16 17 H 0.11 2.68 6.60 -2.39 -0.02 2.66 16 18 C -0.17 -4.33 9.11 71.98 0.66 -3.67 16 19 O -0.38 -13.08 9.21 -130.28 -1.20 -14.28 16 20 C 0.08 1.88 2.40 30.59 0.07 1.95 16 21 C -0.12 -2.39 5.57 30.59 0.17 -2.22 16 22 C -0.11 -1.49 5.92 30.60 0.18 -1.31 16 23 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 24 C -0.11 -1.63 5.92 30.61 0.18 -1.45 16 25 C -0.15 -3.19 5.48 30.61 0.17 -3.02 16 26 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 27 H 0.10 2.39 7.84 -2.91 -0.02 2.37 16 28 H 0.11 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.08 2.67 7.76 -2.39 -0.02 2.65 16 30 H 0.11 2.70 4.44 -2.39 -0.01 2.69 16 31 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 32 H -0.01 -0.52 7.36 -2.39 -0.02 -0.54 16 33 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 34 H 0.10 1.85 7.82 -2.39 -0.02 1.83 16 35 H 0.08 2.04 6.10 -2.39 -0.01 2.03 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.50 7.51 -2.38 -0.02 1.48 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -78.96 375.72 5.36 -73.60 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.91 Total: 16.44 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.11 Total: -4.38 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.74 Total: -85.16 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.95 Total: -48.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -78.96 5.36 -73.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344081373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.392 kcal (2) G-P(sol) polarization free energy of solvation -78.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds