Wall clock time and date at job start Tue Mar 31 2020 07:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99824 * 2 1 4 4 N 1.46502 * 109.46630 * 126.19613 * 3 2 1 5 5 C 1.46498 * 119.99887 * 272.33716 * 4 3 2 6 6 C 1.50694 * 109.47567 * 270.00418 * 5 4 3 7 7 H 1.07998 * 120.00194 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00097 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99937 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47198 * 90.00491 * 10 8 6 12 12 H 1.48507 * 109.46995 * 210.00229 * 10 8 6 13 13 H 1.48499 * 109.47403 * 329.99948 * 10 8 6 14 14 C 1.34772 * 120.00244 * 92.34791 * 4 3 2 15 15 O 1.21290 * 119.99731 * 4.88711 * 14 4 3 16 16 C 1.50697 * 120.00463 * 184.89342 * 14 4 3 17 17 H 1.08996 * 109.47094 * 44.16610 * 16 14 4 18 18 C 1.53007 * 109.46947 * 284.16686 * 16 14 4 19 19 O 1.42893 * 109.47438 * 164.16904 * 16 14 4 20 20 C 1.42897 * 114.00104 * 215.87881 * 19 16 14 21 21 C 1.52999 * 109.47610 * 144.45922 * 20 19 16 22 22 C 1.52992 * 109.47605 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.46939 * 299.99842 * 22 21 20 24 24 C 1.52998 * 109.46833 * 60.00084 * 23 22 21 25 25 C 1.53001 * 109.47233 * 299.99496 * 24 23 22 26 26 H 1.08003 * 119.99807 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00091 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00153 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47071 * 6.19654 * 3 2 1 30 30 H 1.08999 * 109.46772 * 246.19443 * 3 2 1 31 31 H 1.08998 * 109.46920 * 30.01172 * 5 4 3 32 32 H 1.09004 * 109.46911 * 150.00476 * 5 4 3 33 33 H 0.96996 * 120.00460 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.46812 * 307.13913 * 18 16 14 35 35 H 1.09005 * 109.46748 * 67.13427 * 18 16 14 36 36 H 1.08998 * 109.47084 * 187.13484 * 18 16 14 37 37 H 1.09000 * 109.47203 * 24.45491 * 20 19 16 38 38 H 1.09000 * 109.47190 * 59.99560 * 21 20 19 39 39 H 1.09005 * 109.46816 * 299.99983 * 21 20 19 40 40 H 1.09000 * 109.47556 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47355 * 59.99478 * 22 21 20 42 42 H 1.09007 * 109.47031 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.46904 * 299.99641 * 23 22 21 44 44 H 1.09000 * 109.47515 * 60.00330 * 24 23 22 45 45 H 1.09005 * 109.46806 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47551 * 300.00813 * 25 24 23 47 47 H 1.08998 * 109.47056 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0140 1.3202 1.1147 5 6 2.5877 1.7918 2.4345 6 6 2.8281 3.2757 2.5396 7 1 3.2553 3.8139 1.7064 8 6 2.5017 3.9466 3.6991 9 7 1.9810 3.2914 4.7136 10 14 2.7991 5.7862 3.8290 11 1 1.5938 6.5167 3.3614 12 1 3.0771 6.1440 5.2432 13 1 3.9629 6.1603 2.9858 14 6 4.2807 0.9003 0.9259 15 8 4.6588 0.5940 -0.1851 16 6 5.2272 0.8112 2.0951 17 1 4.7160 0.3541 2.9424 18 6 5.6962 2.2159 2.4798 19 8 6.3568 0.0142 1.7339 20 6 6.8620 -0.7944 2.7983 21 6 7.3607 -2.1264 2.2346 22 6 7.9010 -2.9924 3.3743 23 6 9.0576 -2.2651 4.0631 24 6 8.5589 -0.9331 4.6269 25 6 8.0186 -0.0671 3.4871 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3603 2.1306 0.1109 30 1 2.6043 1.4124 -0.9402 31 1 1.5259 1.5853 2.5686 32 1 3.1585 1.2757 3.2066 33 1 1.7517 3.7633 5.5294 34 1 6.0933 2.7202 1.5990 35 1 4.8544 2.7843 2.8754 36 1 6.4748 2.1437 3.2392 37 1 6.0681 -0.9804 3.5216 38 1 8.1546 -1.9405 1.5113 39 1 6.5366 -2.6447 1.7443 40 1 8.2558 -3.9415 2.9728 41 1 7.1068 -3.1783 4.0973 42 1 9.4423 -2.8819 4.8755 43 1 9.8518 -2.0792 3.3402 44 1 7.7647 -1.1191 5.3499 45 1 9.3830 -0.4148 5.1173 46 1 8.8129 0.1188 2.7641 47 1 7.6638 0.8820 3.8887 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344081374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:39 Heat of formation + Delta-G solvation = -84.191812 kcal Electronic energy + Delta-G solvation = -25170.210517 eV Core-core repulsion = 21738.780769 eV Total energy + Delta-G solvation = -3431.429749 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.64482 -38.60498 -36.26376 -35.32745 -33.64855 -32.23582 -31.03870 -30.61758 -29.06899 -27.51053 -25.90245 -23.31185 -22.80988 -22.54462 -21.98246 -19.92976 -19.68947 -18.38944 -16.86251 -16.60999 -16.11375 -15.62128 -15.08511 -14.76433 -14.54947 -14.51190 -14.30911 -14.00507 -13.55546 -13.11406 -12.82217 -12.65139 -12.48826 -12.36155 -12.30823 -12.02305 -11.61462 -11.43388 -11.37725 -11.12071 -11.02843 -11.01630 -10.88970 -10.79258 -10.67744 -10.57080 -10.35384 -10.19591 -10.14422 -9.80580 -9.30631 -9.09491 -8.74281 -8.52190 -7.76464 -6.26110 -4.31763 2.55415 3.18429 3.26375 3.28975 3.41106 3.58135 4.24107 4.40243 4.73019 4.75930 4.96174 5.05802 5.21177 5.23681 5.31207 5.36542 5.41370 5.50072 5.51030 5.55462 5.57695 5.61670 5.77736 5.86382 5.95234 5.99324 5.99932 6.09257 6.17466 6.18709 6.22168 6.34839 6.35475 6.37771 6.50520 6.56624 6.69581 6.92336 7.02105 7.10520 7.20777 7.47182 7.65721 7.71240 7.98321 8.29841 8.73113 9.02126 9.33433 10.79846 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005168 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.696927 B = 5416.438739 C = 6997.891873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.143 3.857 4 N -0.592 5.592 5 C 0.235 3.765 6 C -0.536 4.536 7 H 0.065 0.935 8 C 0.067 3.933 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.518 3.482 15 O -0.556 6.556 16 C 0.083 3.917 17 H 0.081 0.919 18 C -0.186 4.186 19 O -0.359 6.359 20 C 0.089 3.911 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.141 4.141 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.053 0.947 35 H 0.125 0.875 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -8.699 0.013 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.324 5.324 5 C 0.115 3.885 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.305 3.695 15 O -0.435 6.435 16 C 0.022 3.978 17 H 0.099 0.901 18 C -0.243 4.243 19 O -0.277 6.277 20 C 0.031 3.969 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.179 4.179 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.143 -8.822 -0.547 11.364 hybrid contribution -0.097 1.048 0.563 1.194 sum 7.046 -7.774 0.016 10.491 Atomic orbital electron populations 1.23754 0.95739 1.01547 1.01989 1.23392 0.96090 0.99301 0.98641 1.20407 0.91782 0.94683 0.91102 1.48141 1.08939 1.62370 1.12963 1.19500 0.96785 0.94641 0.77570 1.21460 1.42533 0.93085 1.00334 0.91700 1.24945 0.94639 0.98615 0.95491 1.69921 1.41711 1.36311 1.04523 0.86559 0.78963 0.84952 0.77497 1.20427 1.20991 1.19527 1.20368 0.82451 0.76893 0.89772 1.90596 1.76707 1.50708 1.25509 1.21980 0.86603 0.93990 0.95221 0.90119 1.22707 1.04678 0.95448 1.01498 1.87982 1.45948 1.57989 1.35786 1.22195 0.95293 0.90427 0.88967 1.21615 1.01345 0.94455 0.98092 1.21509 0.98126 0.98167 0.97593 1.21569 0.98007 0.96419 0.99838 1.21513 1.00598 0.95727 0.97708 1.22128 0.98845 0.99169 0.97764 0.88421 0.88917 0.87937 0.89863 0.89919 0.94413 0.94487 0.92386 0.92798 0.85742 0.92740 0.92241 0.91207 0.91460 0.91726 0.91903 0.92155 0.91936 0.91886 0.91871 0.91296 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 29.02 0.42 -2.38 16 2 C -0.15 -2.60 9.85 -36.02 -0.35 -2.95 16 3 C 0.14 2.71 5.91 -5.19 -0.03 2.68 16 4 N -0.59 -12.60 2.44 -176.44 -0.43 -13.03 16 5 C 0.23 5.40 4.73 -5.20 -0.02 5.38 16 6 C -0.54 -13.19 6.47 -34.44 -0.22 -13.42 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -23.35 13.29 55.43 0.74 -22.61 16 10 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.52 11.42 6.97 -10.99 -0.08 11.34 16 15 O -0.56 -13.57 16.10 -13.85 -0.22 -13.79 16 16 C 0.08 1.63 2.35 -27.88 -0.07 1.57 16 17 H 0.08 1.55 5.79 -51.93 -0.30 1.25 16 18 C -0.19 -3.64 9.29 37.16 0.35 -3.30 16 19 O -0.36 -6.82 9.21 -54.63 -0.50 -7.32 16 20 C 0.09 1.33 2.64 -26.73 -0.07 1.26 16 21 C -0.12 -1.52 5.57 -26.74 -0.15 -1.67 16 22 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 23 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 24 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 25 C -0.14 -1.86 5.53 -26.73 -0.15 -2.01 16 26 H 0.10 1.36 7.85 -52.48 -0.41 0.95 16 27 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.08 1.53 7.75 -51.93 -0.40 1.13 16 30 H 0.08 1.59 7.29 -51.93 -0.38 1.21 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.04 0.87 5.91 -51.93 -0.31 0.57 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.12 2.72 4.33 -51.93 -0.23 2.49 16 36 H 0.05 0.94 6.04 -51.93 -0.31 0.63 16 37 H 0.06 0.88 7.23 -51.93 -0.38 0.50 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.97 6.10 -51.93 -0.32 0.66 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -28.04 368.76 -8.91 -36.95 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.07 Total: 5.50 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.95 Total: -6.00 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.31 Total: -35.65 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.73 Total: -21.11 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.04 -8.91 -36.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344081374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.244 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds