Wall clock time and date at job start Tue Mar 31 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99824 * 2 1 4 4 N 1.46502 * 109.46630 * 126.19613 * 3 2 1 5 5 C 1.46498 * 119.99887 * 272.33716 * 4 3 2 6 6 C 1.50694 * 109.47567 * 270.00418 * 5 4 3 7 7 H 1.07998 * 120.00194 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00097 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99937 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47198 * 90.00491 * 10 8 6 12 12 H 1.48507 * 109.46995 * 210.00229 * 10 8 6 13 13 H 1.48499 * 109.47403 * 329.99948 * 10 8 6 14 14 C 1.34772 * 120.00244 * 92.34791 * 4 3 2 15 15 O 1.21290 * 119.99731 * 4.88711 * 14 4 3 16 16 C 1.50697 * 120.00463 * 184.89342 * 14 4 3 17 17 H 1.08996 * 109.47094 * 44.16610 * 16 14 4 18 18 C 1.53007 * 109.46947 * 284.16686 * 16 14 4 19 19 O 1.42893 * 109.47438 * 164.16904 * 16 14 4 20 20 C 1.42897 * 114.00104 * 215.87881 * 19 16 14 21 21 C 1.52999 * 109.47610 * 144.45922 * 20 19 16 22 22 C 1.52992 * 109.47605 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.46939 * 299.99842 * 22 21 20 24 24 C 1.52998 * 109.46833 * 60.00084 * 23 22 21 25 25 C 1.53001 * 109.47233 * 299.99496 * 24 23 22 26 26 H 1.08003 * 119.99807 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00091 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00153 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47071 * 6.19654 * 3 2 1 30 30 H 1.08999 * 109.46772 * 246.19443 * 3 2 1 31 31 H 1.08998 * 109.46920 * 30.01172 * 5 4 3 32 32 H 1.09004 * 109.46911 * 150.00476 * 5 4 3 33 33 H 0.96996 * 120.00460 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.46812 * 307.13913 * 18 16 14 35 35 H 1.09005 * 109.46748 * 67.13427 * 18 16 14 36 36 H 1.08998 * 109.47084 * 187.13484 * 18 16 14 37 37 H 1.09000 * 109.47203 * 24.45491 * 20 19 16 38 38 H 1.09000 * 109.47190 * 59.99560 * 21 20 19 39 39 H 1.09005 * 109.46816 * 299.99983 * 21 20 19 40 40 H 1.09000 * 109.47556 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47355 * 59.99478 * 22 21 20 42 42 H 1.09007 * 109.47031 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.46904 * 299.99641 * 23 22 21 44 44 H 1.09000 * 109.47515 * 60.00330 * 24 23 22 45 45 H 1.09005 * 109.46806 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47551 * 300.00813 * 25 24 23 47 47 H 1.08998 * 109.47056 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0140 1.3202 1.1147 5 6 2.5877 1.7918 2.4345 6 6 2.8281 3.2757 2.5396 7 1 3.2553 3.8139 1.7064 8 6 2.5017 3.9466 3.6991 9 7 1.9810 3.2914 4.7136 10 14 2.7991 5.7862 3.8290 11 1 1.5938 6.5167 3.3614 12 1 3.0771 6.1440 5.2432 13 1 3.9629 6.1603 2.9858 14 6 4.2807 0.9003 0.9259 15 8 4.6588 0.5940 -0.1851 16 6 5.2272 0.8112 2.0951 17 1 4.7160 0.3541 2.9424 18 6 5.6962 2.2159 2.4798 19 8 6.3568 0.0142 1.7339 20 6 6.8620 -0.7944 2.7983 21 6 7.3607 -2.1264 2.2346 22 6 7.9010 -2.9924 3.3743 23 6 9.0576 -2.2651 4.0631 24 6 8.5589 -0.9331 4.6269 25 6 8.0186 -0.0671 3.4871 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3603 2.1306 0.1109 30 1 2.6043 1.4124 -0.9402 31 1 1.5259 1.5853 2.5686 32 1 3.1585 1.2757 3.2066 33 1 1.7517 3.7633 5.5294 34 1 6.0933 2.7202 1.5990 35 1 4.8544 2.7843 2.8754 36 1 6.4748 2.1437 3.2392 37 1 6.0681 -0.9804 3.5216 38 1 8.1546 -1.9405 1.5113 39 1 6.5366 -2.6447 1.7443 40 1 8.2558 -3.9415 2.9728 41 1 7.1068 -3.1783 4.0973 42 1 9.4423 -2.8819 4.8755 43 1 9.8518 -2.0792 3.3402 44 1 7.7647 -1.1191 5.3499 45 1 9.3830 -0.4148 5.1173 46 1 8.8129 0.1188 2.7641 47 1 7.6638 0.8820 3.8887 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344081374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:38 Heat of formation + Delta-G solvation = -96.967592 kcal Electronic energy + Delta-G solvation = -25170.764517 eV Core-core repulsion = 21738.780769 eV Total energy + Delta-G solvation = -3431.983748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23435 -39.89235 -37.54127 -37.02923 -35.27213 -33.99523 -32.37343 -31.64117 -30.23390 -29.35663 -27.47995 -25.08305 -24.42250 -23.50041 -23.09839 -21.17218 -20.82438 -19.99648 -18.53735 -18.31789 -17.80935 -17.02310 -16.54114 -16.25189 -16.20107 -15.87978 -15.36202 -15.09025 -14.82361 -14.57521 -14.31163 -14.12601 -13.97859 -13.74556 -13.62753 -13.36980 -13.06127 -12.99519 -12.88841 -12.72927 -12.57499 -12.36310 -12.25742 -12.08937 -12.03593 -11.92379 -11.68688 -11.52528 -11.39523 -11.28729 -10.75026 -10.58015 -10.41244 -10.16078 -9.53683 -8.20319 -6.31274 1.24640 1.42397 1.46047 1.53948 1.66207 2.09431 2.41354 2.91450 3.10232 3.63566 3.76860 3.81032 3.92636 4.05998 4.06592 4.17272 4.21863 4.24746 4.32964 4.36695 4.51726 4.56404 4.57714 4.65892 4.79008 4.82548 4.85002 4.89947 4.95896 5.02038 5.07751 5.14386 5.17317 5.22331 5.24202 5.32902 5.39906 5.50220 5.53879 5.58735 5.65993 5.73927 5.90013 6.05088 6.23977 6.51249 6.79308 7.24927 7.38574 8.85265 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005168 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.696927 B = 5416.438739 C = 6997.891873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.182 4.182 3 C 0.141 3.859 4 N -0.592 5.592 5 C 0.251 3.749 6 C -0.537 4.537 7 H 0.055 0.945 8 C 0.031 3.969 9 N -0.914 5.914 10 Si 0.948 3.052 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.511 3.489 15 O -0.585 6.585 16 C 0.090 3.910 17 H 0.084 0.916 18 C -0.176 4.176 19 O -0.378 6.378 20 C 0.079 3.921 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.138 4.138 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.269 0.731 34 H 0.043 0.957 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -9.180 0.878 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.018 3.982 4 N -0.322 5.322 5 C 0.130 3.870 6 C -0.575 4.575 7 H 0.073 0.927 8 C -0.171 4.171 9 N -0.552 5.552 10 Si 0.773 3.227 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.299 3.701 15 O -0.466 6.466 16 C 0.029 3.971 17 H 0.102 0.898 18 C -0.233 4.233 19 O -0.297 6.297 20 C 0.022 3.978 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.176 4.176 26 H 0.124 0.876 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.489 -9.307 0.316 11.950 hybrid contribution -0.259 1.162 0.256 1.218 sum 7.230 -8.145 0.573 10.906 Atomic orbital electron populations 1.24025 0.94831 1.03185 0.97958 1.23168 0.96844 0.97822 1.02317 1.20516 0.91495 0.96285 0.89865 1.48184 1.09294 1.61760 1.13004 1.19200 0.95664 0.93939 0.78192 1.21513 1.42234 0.93721 1.00050 0.92725 1.25521 0.94411 1.01988 0.95153 1.69993 1.42576 1.37702 1.04972 0.85703 0.78725 0.80745 0.77483 1.20186 1.20543 1.19499 1.20819 0.82830 0.76378 0.90078 1.90566 1.77205 1.52140 1.26709 1.21839 0.86691 0.94369 0.94175 0.89801 1.22562 1.04335 0.94907 1.01531 1.87963 1.45509 1.58436 1.37826 1.22523 0.95863 0.91080 0.88364 1.21630 1.00822 0.93736 0.99110 1.21509 0.98487 0.98304 0.96601 1.21573 0.97633 0.95915 1.00452 1.21519 1.01039 0.96014 0.96669 1.22087 0.97948 0.99089 0.98442 0.87622 0.86273 0.88495 0.89605 0.90841 0.95726 0.95149 0.92192 0.93737 0.87771 0.90577 0.92294 0.91664 0.92568 0.90026 0.91580 0.90073 0.91730 0.91747 0.90473 0.91632 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 14.32 67.78 0.97 -3.44 16 2 C -0.18 -6.06 9.85 25.65 0.25 -5.81 16 3 C 0.14 5.40 5.91 85.63 0.51 5.91 16 4 N -0.59 -25.72 2.44 -830.51 -2.03 -27.75 16 5 C 0.25 11.70 4.73 85.63 0.40 12.10 16 6 C -0.54 -26.62 6.47 25.60 0.17 -26.46 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.03 1.53 5.46 84.65 0.46 1.99 16 9 N -0.91 -47.92 13.29 21.45 0.28 -47.63 16 10 Si 0.95 40.20 29.54 68.60 2.03 42.22 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 C 0.51 23.12 6.97 87.66 0.61 23.73 16 15 O -0.58 -29.36 16.10 15.48 0.25 -29.11 16 16 C 0.09 3.63 2.35 29.85 0.07 3.70 16 17 H 0.08 3.28 5.79 -2.39 -0.01 3.27 16 18 C -0.18 -6.97 9.29 71.98 0.67 -6.30 16 19 O -0.38 -14.61 9.21 -130.44 -1.20 -15.81 16 20 C 0.08 2.34 2.64 30.60 0.08 2.42 16 21 C -0.12 -2.92 5.57 30.59 0.17 -2.75 16 22 C -0.11 -2.06 5.92 30.59 0.18 -1.87 16 23 C -0.12 -1.96 5.92 30.60 0.18 -1.78 16 24 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 25 C -0.14 -3.51 5.53 30.60 0.17 -3.34 16 26 H 0.11 2.72 7.85 -2.91 -0.02 2.70 16 27 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.10 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.09 3.18 7.75 -2.39 -0.02 3.16 16 30 H 0.07 2.92 7.29 -2.39 -0.02 2.90 16 31 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 32 H 0.03 1.46 5.91 -2.38 -0.01 1.45 16 33 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.04 1.80 8.13 -2.39 -0.02 1.78 16 35 H 0.10 4.60 4.33 -2.38 -0.01 4.59 16 36 H 0.08 2.62 6.04 -2.39 -0.01 2.60 16 37 H 0.06 1.73 7.23 -2.39 -0.02 1.72 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.63 6.10 -2.39 -0.01 1.61 16 Total: -1.00 -59.69 368.76 5.33 -54.36 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.92 Total: 27.65 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.08 Total: -3.93 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.74 Total: -75.38 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.95 Total: -44.92 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -59.69 5.33 -54.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344081374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.608 kcal (2) G-P(sol) polarization free energy of solvation -59.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds