Wall clock time and date at job start Tue Mar 31 2020 07:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47621 * 2 1 4 4 C 1.53001 * 109.47009 * 240.00434 * 2 1 3 5 5 C 1.50702 * 109.47443 * 65.00067 * 4 2 1 6 6 H 1.08003 * 119.99712 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00159 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99999 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47177 * 89.99690 * 9 7 5 11 11 H 1.48499 * 109.47371 * 209.99847 * 9 7 5 12 12 H 1.48497 * 109.47012 * 329.99786 * 9 7 5 13 13 C 1.53003 * 109.47430 * 120.00220 * 2 1 3 14 14 N 1.46898 * 109.47269 * 185.48777 * 13 2 1 15 15 C 1.48480 * 110.99830 * 74.44717 * 14 13 2 16 16 C 1.55445 * 105.21309 * 155.95187 * 15 14 13 17 17 H 1.09003 * 109.53921 * 99.24252 * 16 15 14 18 18 C 1.51563 * 107.51989 * 218.23428 * 16 15 14 19 19 C 1.52216 * 112.92926 * 150.17047 * 18 16 15 20 20 C 1.53485 * 107.96926 * 301.44643 * 19 18 16 21 21 C 1.52533 * 107.49352 * 68.90260 * 20 19 18 22 22 C 1.49333 * 113.33136 * 305.57385 * 21 20 19 23 23 C 1.50699 * 105.82861 * 149.38046 * 22 21 20 24 24 O 1.20820 * 119.99818 * 231.94021 * 23 22 21 25 25 O 1.34222 * 119.99963 * 51.94042 * 23 22 21 26 26 C 1.49001 * 111.00136 * 190.07484 * 14 13 2 27 27 H 1.08995 * 109.47462 * 55.34599 * 1 2 3 28 28 H 1.08994 * 109.47429 * 175.35195 * 1 2 3 29 29 H 1.09009 * 109.47042 * 295.35206 * 1 2 3 30 30 H 1.08999 * 109.47102 * 185.00089 * 4 2 1 31 31 H 1.09004 * 109.47115 * 304.99566 * 4 2 1 32 32 H 0.97007 * 119.99943 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47222 * 305.49096 * 13 2 1 34 34 H 1.08996 * 109.46834 * 65.48886 * 13 2 1 35 35 H 1.09007 * 110.29478 * 274.88345 * 15 14 13 36 36 H 1.08994 * 110.29598 * 36.91919 * 15 14 13 37 37 H 1.09004 * 108.78831 * 271.05735 * 18 16 15 38 38 H 1.08995 * 108.78938 * 29.39178 * 18 16 15 39 39 H 1.09001 * 109.76503 * 61.06741 * 19 18 16 40 40 H 1.09004 * 109.75860 * 181.78000 * 19 18 16 41 41 H 1.09003 * 109.85357 * 188.40212 * 20 19 18 42 42 H 1.09006 * 109.85239 * 309.40345 * 20 19 18 43 43 H 1.09004 * 108.71207 * 66.56830 * 21 20 19 44 44 H 1.09003 * 108.70985 * 184.70441 * 21 20 19 45 45 H 0.96700 * 117.00600 * 180.02562 * 25 23 22 46 46 H 1.08999 * 110.68865 * 318.39274 * 26 14 13 47 47 H 1.08994 * 110.69541 * 81.59692 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4020 -3.7284 8 7 2.6754 -1.5191 -3.8513 9 14 1.4975 0.5624 -5.2497 10 1 2.5627 1.5420 -5.5829 11 1 1.3101 -0.3717 -6.3888 12 1 0.2263 1.2837 -4.9868 13 6 2.0400 -0.7213 1.2492 14 7 3.5030 -0.6076 1.3172 15 6 3.9119 0.7595 1.7277 16 6 5.3268 0.5926 2.3494 17 1 6.0830 0.8643 1.6129 18 6 5.4162 1.5289 3.5379 19 6 6.3471 1.0165 4.6278 20 6 5.8297 -0.3537 5.0869 21 6 6.0496 -1.3347 3.9397 22 6 5.4431 -0.8840 2.6517 23 6 6.3193 -1.4506 1.5643 24 8 6.7559 -0.7262 0.7016 25 8 6.6145 -2.7599 1.5543 26 6 4.0588 -1.4945 2.3778 27 1 -0.3634 0.5843 -0.8453 28 1 -0.3634 -1.0242 -0.0833 29 1 -0.3634 0.4401 0.9288 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7198 -1.2952 32 1 2.9226 -1.8420 -4.7320 33 1 1.5986 -0.2675 2.1365 34 1 1.7591 -1.7734 1.2013 35 1 3.9556 1.4176 0.8598 36 1 3.2166 1.1560 2.4675 37 1 5.7776 2.4983 3.1947 38 1 4.4196 1.6558 3.9606 39 1 7.3576 0.9151 4.2319 40 1 6.3484 1.7111 5.4679 41 1 6.3831 -0.6826 5.9665 42 1 4.7668 -0.2889 5.3200 43 1 7.1217 -1.4675 3.7938 44 1 5.6130 -2.2954 4.2126 45 1 7.1804 -3.0770 0.8371 46 1 3.4383 -1.4595 3.2732 47 1 4.1541 -2.5174 2.0136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592471749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:23 Heat of formation + Delta-G solvation = -105.550121 kcal Electronic energy + Delta-G solvation = -25659.291454 eV Core-core repulsion = 22226.935539 eV Total energy + Delta-G solvation = -3432.355914 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47467 -38.74933 -36.75898 -35.94638 -34.48364 -32.48266 -32.14872 -30.57853 -27.19610 -26.94227 -25.70760 -23.74825 -23.10406 -22.36900 -21.40436 -21.02862 -18.87753 -18.29348 -17.61459 -17.19298 -16.29213 -15.70256 -15.28166 -14.86514 -14.69421 -14.30305 -14.17620 -14.15130 -13.42551 -13.27248 -13.05060 -12.79126 -12.55472 -12.32475 -12.10392 -11.92373 -11.75237 -11.45235 -11.43605 -11.28642 -11.11966 -11.01189 -10.81707 -10.74043 -10.49096 -10.45666 -10.27946 -10.21409 -10.03863 -9.91332 -9.61219 -9.02939 -8.81209 -8.20973 -7.99173 -5.84042 -3.84407 2.49923 3.09645 3.40011 3.45924 3.48510 4.20804 4.28287 4.40612 4.57723 4.70526 4.81019 4.91492 4.96908 5.20167 5.31489 5.37184 5.40448 5.50806 5.51568 5.62206 5.67045 5.69736 5.76032 5.78786 5.85627 5.90658 5.94986 6.02452 6.06622 6.08987 6.16629 6.28270 6.31202 6.37473 6.44793 6.51407 6.75117 6.98726 7.01980 7.20761 7.32093 7.49269 7.88970 8.10354 8.10949 8.25408 8.61498 9.23341 9.77583 11.27232 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.004328 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.393661 B = 6468.198812 C = 6979.181849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.055 3.945 14 N -0.497 5.497 15 C 0.041 3.959 16 C -0.094 4.094 17 H 0.111 0.889 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.027 4.027 23 C 0.482 3.518 24 O -0.500 6.500 25 O -0.519 6.519 26 C 0.039 3.961 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.008 0.992 32 H 0.257 0.743 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.408 0.592 46 H 0.054 0.946 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 0.779 20.204 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.073 4.073 14 N -0.220 5.220 15 C -0.087 4.087 16 C -0.113 4.113 17 H 0.129 0.871 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.029 4.029 23 C 0.323 3.677 24 O -0.387 6.387 25 O -0.331 6.331 26 C -0.090 4.090 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.266 0.734 46 H 0.072 0.928 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.942 0.857 19.572 20.784 hybrid contribution -0.268 0.389 -0.840 0.964 sum 6.674 1.246 18.732 19.925 Atomic orbital electron populations 1.21694 0.96410 1.01160 0.99644 1.21179 0.94178 0.99247 0.95471 0.92663 1.19044 0.97381 0.94407 0.89298 1.21304 1.34286 1.08115 0.91389 0.93028 1.24985 0.95498 0.95064 0.98865 1.69982 1.39224 1.21228 1.23024 0.86712 0.78802 0.79904 0.83253 1.20836 1.21414 1.20060 1.22440 0.85896 1.01127 0.97826 1.65492 1.11925 1.04199 1.40430 1.23566 0.93594 0.92212 0.99343 1.21444 1.00176 0.90926 0.98736 0.87077 1.21196 1.00093 0.98545 0.94780 1.21509 0.99394 0.96738 0.98197 1.21547 1.01613 0.95113 0.97088 1.20624 1.00938 0.99813 0.92443 1.19964 0.94543 0.96093 0.92282 1.23565 0.78275 0.79763 0.86097 1.90672 1.50592 1.59768 1.37632 1.84470 1.67004 1.27030 1.54566 1.23337 0.92056 0.98792 0.94783 0.91981 0.93538 0.95379 0.94987 0.97364 0.93320 0.95915 0.91293 0.89456 0.93825 0.91542 0.92010 0.91816 0.91668 0.91362 0.91501 0.91496 0.90440 0.73351 0.92766 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.93 37.15 0.33 -2.18 16 2 C -0.08 -1.72 2.39 -90.62 -0.22 -1.93 16 3 H 0.05 1.19 7.33 -51.93 -0.38 0.81 16 4 C 0.04 0.95 4.40 -27.88 -0.12 0.83 16 5 C -0.51 -14.87 8.47 -34.44 -0.29 -15.16 16 6 H 0.05 1.46 7.06 -52.48 -0.37 1.09 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.98 13.29 55.43 0.74 -27.24 16 9 Si 0.88 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.05 0.96 4.23 -3.82 -0.02 0.95 16 14 N -0.50 -8.61 4.57 -229.36 -1.05 -9.66 16 15 C 0.04 0.63 5.40 -1.65 -0.01 0.62 16 16 C -0.09 -1.26 2.71 -90.97 -0.25 -1.51 16 17 H 0.11 1.76 5.91 -51.93 -0.31 1.46 16 18 C -0.11 -1.11 5.26 -27.86 -0.15 -1.25 16 19 C -0.12 -1.03 5.98 -26.88 -0.16 -1.19 16 20 C -0.12 -0.93 6.07 -26.72 -0.16 -1.10 16 21 C -0.10 -0.97 4.56 -28.78 -0.13 -1.10 16 22 C -0.03 -0.35 0.89 -158.00 -0.14 -0.49 16 23 C 0.48 7.28 5.88 36.01 0.21 7.50 16 24 O -0.50 -9.43 15.50 -18.75 -0.29 -9.72 16 25 O -0.52 -6.45 12.60 -39.24 -0.49 -6.94 16 26 C 0.04 0.54 5.08 -2.26 -0.01 0.53 16 27 H 0.06 1.27 7.09 -51.93 -0.37 0.90 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.03 0.94 7.64 -51.93 -0.40 0.55 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 34 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 35 H 0.09 1.52 7.84 -51.93 -0.41 1.12 16 36 H 0.04 0.60 6.71 -51.93 -0.35 0.25 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.60 7.14 -51.93 -0.37 0.23 16 39 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.07 0.65 7.53 -51.93 -0.39 0.25 16 44 H 0.08 0.69 7.83 -51.93 -0.41 0.28 16 45 H 0.41 3.71 9.10 45.56 0.41 4.12 16 46 H 0.05 0.65 8.03 -51.93 -0.42 0.24 16 47 H 0.09 1.35 7.47 -51.93 -0.39 0.96 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -34.06 358.37 -9.40 -43.45 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.47 Total: 1.18 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.21 Total: -13.91 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.31 Total: -36.90 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.78 Total: -16.66 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.06 -9.40 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592471749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.097 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds