Wall clock time and date at job start Tue Mar 31 2020 07:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47021 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99674 * 2 1 3 5 5 N 1.46498 * 109.47156 * 66.35170 * 4 2 1 6 6 C 1.46499 * 120.00164 * 264.83404 * 5 4 2 7 7 C 1.50701 * 109.46807 * 274.90110 * 6 5 4 8 8 H 1.08001 * 120.00080 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99815 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99790 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00169 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46733 * 90.00203 * 11 9 7 13 13 H 1.48491 * 109.47268 * 210.00151 * 11 9 7 14 14 H 1.48495 * 109.46916 * 330.00889 * 11 9 7 15 15 C 1.34785 * 119.99847 * 84.83097 * 5 4 2 16 16 O 1.21282 * 120.00142 * 354.64133 * 15 5 4 17 17 C 1.50704 * 119.99679 * 174.91560 * 15 5 4 18 18 H 1.09003 * 109.41374 * 38.79113 * 17 15 5 19 19 C 1.52955 * 109.41454 * 278.93171 * 17 15 5 20 20 C 1.53230 * 109.40371 * 176.29495 * 19 17 15 21 21 C 1.51263 * 108.53615 * 54.63217 * 20 19 17 22 22 O 1.20761 * 120.85625 * 128.62761 * 21 20 19 23 23 C 1.51274 * 118.29969 * 308.64675 * 21 20 19 24 24 C 1.52957 * 109.41352 * 158.65051 * 17 15 5 25 25 H 1.09007 * 109.48373 * 303.68658 * 24 17 15 26 26 C 1.53002 * 109.48076 * 63.72303 * 24 17 15 27 27 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47013 * 300.00146 * 1 2 3 29 29 H 1.08994 * 109.47067 * 60.00197 * 1 2 3 30 30 H 1.08996 * 109.46887 * 239.99595 * 2 1 3 31 31 H 1.08998 * 109.46744 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47039 * 299.99820 * 3 2 1 33 33 H 1.09000 * 109.46906 * 60.00157 * 3 2 1 34 34 H 1.08995 * 109.47474 * 306.35091 * 4 2 1 35 35 H 1.09001 * 109.46952 * 186.34790 * 4 2 1 36 36 H 1.09000 * 109.47032 * 34.89705 * 6 5 4 37 37 H 1.08997 * 109.47178 * 154.90248 * 6 5 4 38 38 H 0.96998 * 119.99989 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.48454 * 296.27696 * 19 17 15 40 40 H 1.08999 * 109.48229 * 56.31827 * 19 17 15 41 41 H 1.09004 * 109.62553 * 174.34413 * 20 19 17 42 42 H 1.08998 * 109.62602 * 294.72530 * 20 19 17 43 43 H 1.09002 * 109.62722 * 171.06231 * 23 21 20 44 44 H 1.08992 * 109.62724 * 291.63640 * 23 21 20 45 45 H 1.08996 * 109.46842 * 60.00594 * 26 24 17 46 46 H 1.09006 * 109.46605 * 180.02562 * 26 24 17 47 47 H 1.09001 * 109.47252 * 300.00230 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6804 -2.1394 1.1754 6 6 0.4596 -2.6205 1.8269 7 6 0.7480 -2.9199 3.2755 8 1 1.7413 -2.7675 3.6711 9 6 -0.2561 -3.3894 4.0955 10 7 -0.0046 -3.6502 5.3598 11 14 -1.9741 -3.6537 3.4111 12 1 -2.0915 -5.0394 2.8901 13 1 -2.9739 -3.4437 4.4887 14 1 -2.2222 -2.6884 2.3104 15 6 2.4727 -3.0016 0.5079 16 8 3.4298 -2.5897 -0.1127 17 6 2.1657 -4.4769 0.5278 18 1 1.0870 -4.6233 0.4720 19 6 2.6953 -5.0891 1.8256 20 6 2.3023 -6.5688 1.8880 21 6 2.7950 -7.2506 0.6308 22 8 3.4522 -8.2619 0.6917 23 6 2.4437 -6.6331 -0.7047 24 6 2.8330 -5.1513 -0.6720 25 1 2.5009 -4.6689 -1.5914 26 6 4.3527 -5.0239 -0.5488 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5868 -0.2772 2.1356 35 1 3.1240 -0.6238 1.3079 36 1 -0.3133 -1.8548 1.7611 37 1 0.1158 -3.5276 1.3299 38 1 -0.7109 -3.9809 5.9366 39 1 3.7813 -4.9999 1.8530 40 1 2.2655 -4.5626 2.6777 41 1 2.7619 -7.0332 2.7605 42 1 1.2179 -6.6571 1.9549 43 1 2.9942 -7.1387 -1.4980 44 1 1.3723 -6.7274 -0.8812 45 1 4.6844 -5.5070 0.3702 46 1 4.8280 -5.5042 -1.4042 47 1 4.6283 -3.9696 -0.5251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625794820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:45 Heat of formation + Delta-G solvation = -96.431941 kcal Electronic energy + Delta-G solvation = -26051.985079 eV Core-core repulsion = 22620.024558 eV Total energy + Delta-G solvation = -3431.960520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.47009 -39.04542 -36.81979 -35.64911 -34.19902 -32.41841 -31.63578 -29.26316 -28.27145 -27.24747 -26.90552 -25.28973 -22.70691 -22.61734 -21.26645 -20.10813 -18.68763 -17.82196 -17.15057 -16.47763 -16.11569 -15.44515 -15.12698 -14.83108 -14.58267 -14.41079 -14.12516 -13.75136 -13.65757 -13.30827 -13.02287 -12.71803 -12.51545 -12.29011 -12.25331 -12.10687 -11.92071 -11.53434 -11.43739 -11.38540 -11.30456 -11.07240 -11.01968 -10.82201 -10.68221 -10.55840 -10.45593 -10.29335 -10.26360 -10.04266 -9.67572 -9.09827 -8.82896 -8.72678 -7.78152 -6.30038 -4.30828 2.16521 3.09282 3.18115 3.20895 3.24435 3.75413 4.18365 4.33790 4.83951 4.93653 5.00863 5.03702 5.18751 5.21602 5.27847 5.35564 5.41622 5.46902 5.56454 5.72339 5.79040 5.82227 5.85785 5.90332 5.94442 5.98348 6.05580 6.06553 6.18796 6.21044 6.26325 6.29003 6.32282 6.34312 6.46132 6.49063 6.58747 6.63687 6.67325 6.83118 6.94595 7.29375 7.39303 7.69209 8.06614 8.34880 8.73503 8.88462 9.29235 10.81790 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.007629 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.183733 B = 3669.335438 C = 5562.763925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.127 3.873 5 N -0.585 5.585 6 C 0.202 3.798 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.886 5.886 11 Si 0.865 3.135 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.524 3.476 16 O -0.561 6.561 17 C -0.102 4.102 18 H 0.096 0.904 19 C -0.116 4.116 20 C -0.163 4.163 21 C 0.365 3.635 22 O -0.471 6.471 23 C -0.167 4.167 24 C -0.063 4.063 25 H 0.079 0.921 26 C -0.168 4.168 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.043 0.957 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 1.749 -10.218 10.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.004 3.996 5 N -0.314 5.314 6 C 0.081 3.919 7 C -0.577 4.577 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.523 5.523 11 Si 0.691 3.309 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.188 1.188 15 C 0.312 3.688 16 O -0.442 6.442 17 C -0.123 4.123 18 H 0.114 0.886 19 C -0.154 4.154 20 C -0.201 4.201 21 C 0.242 3.758 22 O -0.345 6.345 23 C -0.205 4.205 24 C -0.082 4.082 25 H 0.097 0.903 26 C -0.225 4.225 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.056 1.379 -10.297 10.442 hybrid contribution -1.287 -0.211 -0.072 1.306 sum -0.232 1.169 -10.369 10.437 Atomic orbital electron populations 1.21896 0.95409 1.02066 1.00990 1.21489 0.95952 0.95973 0.99676 1.21744 1.00912 0.95901 1.01375 1.21365 1.00226 0.80823 0.97170 1.47912 1.24967 1.07262 1.51282 1.19972 0.82833 0.95211 0.93880 1.21319 0.98891 1.45238 0.92259 0.90068 1.24851 0.98375 0.94646 0.94615 1.69879 1.33619 1.43853 1.04983 0.87022 0.85068 0.79356 0.79421 1.19804 1.20923 1.18838 1.20329 0.82105 0.88125 0.78220 1.90480 1.29946 1.79419 1.44388 1.21322 1.02103 0.92360 0.96548 0.88585 1.21749 1.01490 0.93287 0.98858 1.22251 1.03655 0.97391 0.96760 1.25029 0.74996 0.82527 0.93225 1.90361 1.31001 1.23108 1.90071 1.22422 1.03472 0.97588 0.96971 1.20880 0.97117 0.92165 0.98086 0.90308 1.22308 0.94048 1.05721 1.00378 0.92246 0.92667 0.93560 0.91031 0.92742 0.93046 0.92709 0.90116 0.91247 0.94520 0.95148 0.92294 0.91601 0.85885 0.89297 0.88113 0.89554 0.88574 0.93396 0.93753 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.39 37.16 0.31 -1.72 16 2 C -0.11 -1.61 3.08 -90.62 -0.28 -1.89 16 3 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 4 C 0.13 2.14 4.76 -4.04 -0.02 2.12 16 5 N -0.59 -10.72 2.23 -175.06 -0.39 -11.11 16 6 C 0.20 3.99 3.25 -5.19 -0.02 3.97 16 7 C -0.54 -12.68 7.71 -34.44 -0.27 -12.95 16 8 H 0.08 2.16 7.76 -52.49 -0.41 1.75 16 9 C 0.08 1.96 5.47 -17.82 -0.10 1.87 16 10 N -0.89 -23.99 13.96 55.43 0.77 -23.21 16 11 Si 0.86 18.42 27.47 -169.99 -4.67 13.75 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.26 -5.32 6.54 56.52 0.37 -4.95 16 15 C 0.52 9.48 6.70 -10.98 -0.07 9.41 16 16 O -0.56 -10.92 13.06 5.56 0.07 -10.84 16 17 C -0.10 -1.63 1.50 -91.81 -0.14 -1.77 16 18 H 0.10 1.48 6.10 -51.93 -0.32 1.16 16 19 C -0.12 -1.95 4.89 -26.64 -0.13 -2.08 16 20 C -0.16 -2.49 6.17 -27.49 -0.17 -2.66 16 21 C 0.37 5.57 5.74 -28.48 -0.16 5.40 16 22 O -0.47 -8.49 17.89 6.00 0.11 -8.38 16 23 C -0.17 -2.13 5.66 -27.48 -0.16 -2.29 16 24 C -0.06 -0.90 2.47 -90.52 -0.22 -1.12 16 25 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 26 C -0.17 -2.53 8.31 37.16 0.31 -2.22 16 27 H 0.06 0.90 6.19 -51.93 -0.32 0.58 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.13 8.04 -51.93 -0.42 0.72 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.38 8.03 -51.93 -0.42 0.97 16 35 H 0.07 1.20 7.66 -51.93 -0.40 0.80 16 36 H 0.04 0.73 5.41 -51.93 -0.28 0.45 16 37 H 0.03 0.58 5.22 -51.93 -0.27 0.31 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.07 1.12 6.19 -51.93 -0.32 0.79 16 40 H 0.12 2.44 5.24 -51.93 -0.27 2.16 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.74 5.60 -51.93 -0.29 0.45 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 1.73 5.19 -51.93 -0.27 1.46 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -27.24 353.16 -7.35 -34.60 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.80 Total: 7.18 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.77 Total: -7.29 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.38 Total: -34.33 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.18 Total: -19.23 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.67 Total: 13.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.24 -7.35 -34.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.834 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds