Wall clock time and date at job start Tue Mar 31 2020 07:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47021 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99674 * 2 1 3 5 5 N 1.46498 * 109.47156 * 66.35170 * 4 2 1 6 6 C 1.46499 * 120.00164 * 264.83404 * 5 4 2 7 7 C 1.50701 * 109.46807 * 274.90110 * 6 5 4 8 8 H 1.08001 * 120.00080 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99815 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99790 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00169 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46733 * 90.00203 * 11 9 7 13 13 H 1.48491 * 109.47268 * 210.00151 * 11 9 7 14 14 H 1.48495 * 109.46916 * 330.00889 * 11 9 7 15 15 C 1.34785 * 119.99847 * 84.83097 * 5 4 2 16 16 O 1.21282 * 120.00142 * 354.64133 * 15 5 4 17 17 C 1.50704 * 119.99679 * 174.91560 * 15 5 4 18 18 H 1.09003 * 109.41374 * 38.79113 * 17 15 5 19 19 C 1.52955 * 109.41454 * 278.93171 * 17 15 5 20 20 C 1.53230 * 109.40371 * 176.29495 * 19 17 15 21 21 C 1.51263 * 108.53615 * 54.63217 * 20 19 17 22 22 O 1.20761 * 120.85625 * 128.62761 * 21 20 19 23 23 C 1.51274 * 118.29969 * 308.64675 * 21 20 19 24 24 C 1.52957 * 109.41352 * 158.65051 * 17 15 5 25 25 H 1.09007 * 109.48373 * 303.68658 * 24 17 15 26 26 C 1.53002 * 109.48076 * 63.72303 * 24 17 15 27 27 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47013 * 300.00146 * 1 2 3 29 29 H 1.08994 * 109.47067 * 60.00197 * 1 2 3 30 30 H 1.08996 * 109.46887 * 239.99595 * 2 1 3 31 31 H 1.08998 * 109.46744 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47039 * 299.99820 * 3 2 1 33 33 H 1.09000 * 109.46906 * 60.00157 * 3 2 1 34 34 H 1.08995 * 109.47474 * 306.35091 * 4 2 1 35 35 H 1.09001 * 109.46952 * 186.34790 * 4 2 1 36 36 H 1.09000 * 109.47032 * 34.89705 * 6 5 4 37 37 H 1.08997 * 109.47178 * 154.90248 * 6 5 4 38 38 H 0.96998 * 119.99989 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.48454 * 296.27696 * 19 17 15 40 40 H 1.08999 * 109.48229 * 56.31827 * 19 17 15 41 41 H 1.09004 * 109.62553 * 174.34413 * 20 19 17 42 42 H 1.08998 * 109.62602 * 294.72530 * 20 19 17 43 43 H 1.09002 * 109.62722 * 171.06231 * 23 21 20 44 44 H 1.08992 * 109.62724 * 291.63640 * 23 21 20 45 45 H 1.08996 * 109.46842 * 60.00594 * 26 24 17 46 46 H 1.09006 * 109.46605 * 180.02562 * 26 24 17 47 47 H 1.09001 * 109.47252 * 300.00230 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6804 -2.1394 1.1754 6 6 0.4596 -2.6205 1.8269 7 6 0.7480 -2.9199 3.2755 8 1 1.7413 -2.7675 3.6711 9 6 -0.2561 -3.3894 4.0955 10 7 -0.0046 -3.6502 5.3598 11 14 -1.9741 -3.6537 3.4111 12 1 -2.0915 -5.0394 2.8901 13 1 -2.9739 -3.4437 4.4887 14 1 -2.2222 -2.6884 2.3104 15 6 2.4727 -3.0016 0.5079 16 8 3.4298 -2.5897 -0.1127 17 6 2.1657 -4.4769 0.5278 18 1 1.0870 -4.6233 0.4720 19 6 2.6953 -5.0891 1.8256 20 6 2.3023 -6.5688 1.8880 21 6 2.7950 -7.2506 0.6308 22 8 3.4522 -8.2619 0.6917 23 6 2.4437 -6.6331 -0.7047 24 6 2.8330 -5.1513 -0.6720 25 1 2.5009 -4.6689 -1.5914 26 6 4.3527 -5.0239 -0.5488 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5868 -0.2772 2.1356 35 1 3.1240 -0.6238 1.3079 36 1 -0.3133 -1.8548 1.7611 37 1 0.1158 -3.5276 1.3299 38 1 -0.7109 -3.9809 5.9366 39 1 3.7813 -4.9999 1.8530 40 1 2.2655 -4.5626 2.6777 41 1 2.7619 -7.0332 2.7605 42 1 1.2179 -6.6571 1.9549 43 1 2.9942 -7.1387 -1.4980 44 1 1.3723 -6.7274 -0.8812 45 1 4.6844 -5.5070 0.3702 46 1 4.8280 -5.5042 -1.4042 47 1 4.6283 -3.9696 -0.5251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625794820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:45 Heat of formation + Delta-G solvation = -110.193956 kcal Electronic energy + Delta-G solvation = -26052.581844 eV Core-core repulsion = 22620.024558 eV Total energy + Delta-G solvation = -3432.557286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80989 -40.39835 -38.11545 -37.04875 -35.63045 -34.18948 -32.89338 -30.52336 -29.94948 -28.47317 -27.97776 -26.64248 -24.33245 -23.99492 -22.52986 -21.31162 -20.00164 -19.24655 -18.90988 -17.92646 -17.47268 -16.77581 -16.47091 -16.23174 -15.87811 -15.76482 -15.54352 -15.04795 -14.91733 -14.74804 -14.33703 -14.19968 -13.87378 -13.73055 -13.49739 -13.36711 -13.11364 -12.97561 -12.70564 -12.63666 -12.61052 -12.50847 -12.40617 -12.11335 -12.00496 -11.91196 -11.70229 -11.67465 -11.54632 -11.49875 -11.35639 -10.69016 -10.33862 -10.19806 -9.30159 -8.21583 -6.25956 0.94382 1.43139 1.47432 1.54398 1.78860 2.34447 2.40096 3.11754 3.16196 3.62060 3.68072 3.77577 4.00088 4.05183 4.08002 4.19383 4.22800 4.26730 4.35714 4.45215 4.56299 4.64074 4.66792 4.73001 4.79224 4.83117 4.87430 4.91132 4.92833 5.01167 5.05031 5.06002 5.09468 5.09762 5.19110 5.24886 5.26922 5.41797 5.48239 5.50368 5.55806 5.56997 5.85084 6.27184 6.48260 6.72371 6.80122 7.33493 7.45634 8.93687 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.007629 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.183733 B = 3669.335438 C = 5562.763925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.590 5.590 6 C 0.211 3.789 7 C -0.525 4.525 8 H 0.036 0.964 9 C 0.026 3.974 10 N -0.940 5.940 11 Si 0.925 3.075 12 H -0.257 1.257 13 H -0.295 1.295 14 H -0.239 1.239 15 C 0.518 3.482 16 O -0.576 6.576 17 C -0.100 4.100 18 H 0.110 0.890 19 C -0.108 4.108 20 C -0.162 4.162 21 C 0.371 3.629 22 O -0.501 6.501 23 C -0.157 4.157 24 C -0.057 4.057 25 H 0.095 0.905 26 C -0.165 4.165 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.265 0.735 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.128 0.872 45 H 0.034 0.966 46 H 0.060 0.940 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 1.733 -13.078 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.195 4.195 4 C 0.001 3.999 5 N -0.319 5.319 6 C 0.089 3.911 7 C -0.563 4.563 8 H 0.054 0.946 9 C -0.174 4.174 10 N -0.579 5.579 11 Si 0.748 3.252 12 H -0.182 1.182 13 H -0.221 1.221 14 H -0.162 1.162 15 C 0.307 3.693 16 O -0.458 6.458 17 C -0.121 4.121 18 H 0.128 0.872 19 C -0.146 4.146 20 C -0.199 4.199 21 C 0.250 3.750 22 O -0.378 6.378 23 C -0.194 4.194 24 C -0.076 4.076 25 H 0.113 0.887 26 C -0.222 4.222 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.146 0.854 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.787 1.387 -13.188 13.284 hybrid contribution -0.564 -0.141 0.890 1.063 sum -1.351 1.245 -12.298 12.434 Atomic orbital electron populations 1.21866 0.94524 1.01619 1.02059 1.21392 0.96601 0.96852 0.97395 1.21715 1.00795 0.94424 1.02567 1.21451 0.99501 0.80542 0.98385 1.47966 1.24781 1.08003 1.51124 1.19817 0.83552 0.96199 0.91504 1.21398 0.96757 1.43887 0.94278 0.94602 1.25633 1.02582 0.94543 0.94594 1.70046 1.34926 1.46144 1.06826 0.86051 0.79472 0.80579 0.79086 1.18168 1.22108 1.16169 1.20751 0.81706 0.89011 0.77791 1.90485 1.30339 1.79909 1.45017 1.21362 1.03086 0.90830 0.96777 0.87168 1.21536 1.00641 0.94130 0.98249 1.22237 1.04468 0.96082 0.97162 1.25256 0.73825 0.81806 0.94102 1.90363 1.32323 1.24608 1.90475 1.22416 1.05715 0.95870 0.95411 1.20855 0.96010 0.93125 0.97602 0.88708 1.22241 0.95205 1.04253 1.00489 0.93385 0.92665 0.91428 0.92231 0.92989 0.91208 0.92131 0.90952 0.92548 0.93662 0.93196 0.92578 0.92649 0.89233 0.90197 0.86744 0.88064 0.85362 0.94679 0.92060 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.39 71.98 0.60 -3.01 16 2 C -0.10 -2.82 3.08 -10.79 -0.03 -2.85 16 3 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 4 C 0.12 4.17 4.76 86.38 0.41 4.58 16 5 N -0.59 -21.38 2.23 -826.15 -1.84 -23.22 16 6 C 0.21 8.06 3.25 85.63 0.28 8.34 16 7 C -0.52 -25.12 7.71 25.60 0.20 -24.93 16 8 H 0.04 2.01 7.76 -2.91 -0.02 1.99 16 9 C 0.03 1.28 5.47 84.65 0.46 1.74 16 10 N -0.94 -52.52 13.96 21.45 0.30 -52.22 16 11 Si 0.92 36.75 27.47 68.60 1.88 38.64 16 12 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 13 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.24 -8.45 6.54 99.48 0.65 -7.80 16 15 C 0.52 18.45 6.70 87.66 0.59 19.04 16 16 O -0.58 -22.24 13.06 -3.04 -0.04 -22.28 16 17 C -0.10 -3.03 1.50 -11.57 -0.02 -3.04 16 18 H 0.11 3.04 6.10 -2.39 -0.01 3.02 16 19 C -0.11 -3.64 4.89 30.66 0.15 -3.49 16 20 C -0.16 -4.84 6.17 30.10 0.19 -4.66 16 21 C 0.37 10.63 5.74 29.46 0.17 10.80 16 22 O -0.50 -17.47 17.89 -1.45 -0.03 -17.49 16 23 C -0.16 -3.44 5.66 30.11 0.17 -3.27 16 24 C -0.06 -1.46 2.47 -10.73 -0.03 -1.49 16 25 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 26 C -0.17 -4.76 8.31 71.98 0.60 -4.17 16 27 H 0.05 1.31 6.19 -2.39 -0.01 1.30 16 28 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.79 8.04 -2.39 -0.02 1.77 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 2.51 8.03 -2.39 -0.02 2.49 16 35 H 0.06 2.01 7.66 -2.39 -0.02 1.99 16 36 H 0.05 1.69 5.41 -2.39 -0.01 1.68 16 37 H 0.05 1.75 5.22 -2.39 -0.01 1.74 16 38 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.05 1.95 6.19 -2.39 -0.01 1.93 16 40 H 0.09 3.68 5.24 -2.39 -0.01 3.67 16 41 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.11 3.11 8.14 -2.39 -0.02 3.10 16 43 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.03 1.08 5.60 -2.39 -0.01 1.06 16 46 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.08 2.70 5.19 -2.39 -0.01 2.68 16 Total: -1.00 -60.66 353.16 5.57 -55.09 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.89 Total: 30.28 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.40 Total: -8.80 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.54 Total: -75.44 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.07 Total: -39.77 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.88 Total: 38.64 kcal Total: -60.66 5.57 -55.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.102 kcal (2) G-P(sol) polarization free energy of solvation -60.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds