Wall clock time and date at job start Tue Mar 31 2020 07:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46935 * 2 1 4 4 C 1.52998 * 109.46797 * 119.99693 * 2 1 3 5 5 N 1.46506 * 109.46862 * 174.47831 * 4 2 1 6 6 C 1.46498 * 120.00061 * 275.42804 * 5 4 2 7 7 C 1.50694 * 109.46935 * 269.99608 * 6 5 4 8 8 H 1.08003 * 120.00351 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99983 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00205 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99786 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47170 * 89.99914 * 11 9 7 13 13 H 1.48505 * 109.47070 * 210.00269 * 11 9 7 14 14 H 1.48499 * 109.47060 * 329.99769 * 11 9 7 15 15 C 1.34775 * 119.99401 * 95.42547 * 5 4 2 16 16 O 1.21280 * 120.00494 * 5.00322 * 15 5 4 17 17 C 1.50697 * 119.99594 * 185.00046 * 15 5 4 18 18 H 1.09000 * 109.35788 * 333.83887 * 17 15 5 19 19 C 1.52964 * 109.41726 * 93.66266 * 17 15 5 20 20 C 1.53221 * 109.40780 * 183.70168 * 19 17 15 21 21 C 1.51261 * 108.53855 * 305.37351 * 20 19 17 22 22 O 1.20769 * 120.85110 * 231.36632 * 21 20 19 23 23 C 1.51263 * 118.30118 * 51.34880 * 21 20 19 24 24 C 1.52957 * 109.41630 * 214.01422 * 17 15 5 25 25 H 1.09000 * 109.48466 * 296.28158 * 24 17 15 26 26 C 1.53001 * 109.47983 * 56.30417 * 24 17 15 27 27 H 1.08998 * 109.47667 * 300.00200 * 1 2 3 28 28 H 1.09002 * 109.47347 * 60.00081 * 1 2 3 29 29 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46970 * 239.99829 * 2 1 3 31 31 H 1.08997 * 109.46981 * 66.04507 * 3 2 1 32 32 H 1.08996 * 109.47170 * 186.04467 * 3 2 1 33 33 H 1.09003 * 109.46921 * 306.04524 * 3 2 1 34 34 H 1.09002 * 109.46982 * 54.48507 * 4 2 1 35 35 H 1.08997 * 109.47289 * 294.48319 * 4 2 1 36 36 H 1.08998 * 109.47235 * 30.00363 * 6 5 4 37 37 H 1.09003 * 109.46544 * 149.99990 * 6 5 4 38 38 H 0.96999 * 120.00269 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.48181 * 303.68849 * 19 17 15 40 40 H 1.09003 * 109.48103 * 63.70641 * 19 17 15 41 41 H 1.09001 * 109.62577 * 65.09174 * 20 19 17 42 42 H 1.09006 * 109.62470 * 185.65630 * 20 19 17 43 43 H 1.09003 * 109.62673 * 188.94028 * 23 21 20 44 44 H 1.09000 * 109.63092 * 68.36925 * 23 21 20 45 45 H 1.08992 * 109.47151 * 54.47773 * 26 24 17 46 46 H 1.09000 * 109.47261 * 174.48052 * 26 24 17 47 47 H 1.09004 * 109.46795 * 294.47718 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4989 -0.8374 1.1847 6 6 4.1137 -1.9478 0.4532 7 6 4.3144 -3.1140 1.3862 8 1 4.0137 -3.0360 2.4206 9 6 4.8819 -4.2807 0.9194 10 7 5.0566 -5.2987 1.7335 11 14 5.4026 -4.4154 -0.8695 12 1 6.8111 -3.9664 -1.0102 13 1 5.2864 -5.8276 -1.3139 14 1 4.5242 -3.5593 -1.7065 15 6 4.2755 0.0775 1.7983 16 8 3.7692 0.9442 2.4789 17 6 5.7730 0.0233 1.6387 18 1 6.0765 -1.0011 1.4227 19 6 6.1945 0.9327 0.4832 20 6 7.7053 0.8068 0.2611 21 6 8.4091 1.0939 1.5689 22 8 9.3066 1.9000 1.6252 23 6 7.9598 0.3460 2.8045 24 6 6.4397 0.4886 2.9343 25 1 6.1869 1.5327 3.1186 26 6 5.9440 -0.3698 4.0999 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7677 1.9241 0.9391 32 1 3.1245 1.4445 -0.1082 33 1 1.5909 1.9866 -0.8310 34 1 1.5981 -1.7164 1.3001 35 1 1.7595 -0.1535 2.1365 36 1 3.4620 -2.2471 -0.3677 37 1 5.0776 -1.6311 0.0549 38 1 5.4562 -6.1193 1.4052 39 1 5.6677 0.6359 -0.4238 40 1 5.9473 1.9663 0.7253 41 1 7.9439 -0.2043 -0.0688 42 1 8.0257 1.5260 -0.4927 43 1 8.4437 0.7691 3.6848 44 1 8.2219 -0.7078 2.7102 45 1 6.1091 -1.4227 3.8716 46 1 6.4905 -0.1042 5.0048 47 1 4.8793 -0.1938 4.2536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625794821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:49 Heat of formation + Delta-G solvation = -105.887379 kcal Electronic energy + Delta-G solvation = -25999.068140 eV Core-core repulsion = 22566.697601 eV Total energy + Delta-G solvation = -3432.370539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39239 -39.11063 -36.74716 -35.58552 -34.19601 -32.49942 -32.27287 -29.36827 -28.16590 -26.98398 -26.85246 -25.47077 -22.89204 -22.39096 -21.12365 -19.87224 -19.14091 -18.20123 -17.07454 -16.62455 -15.89756 -15.46488 -15.25434 -14.96879 -14.57202 -14.39742 -14.30945 -13.97431 -13.64442 -13.10762 -13.03255 -12.71651 -12.41453 -12.21723 -12.16579 -12.08077 -11.99552 -11.79047 -11.70516 -11.56805 -11.37708 -11.04425 -10.99209 -10.79789 -10.68887 -10.67746 -10.54105 -10.34146 -10.26597 -10.17998 -9.65985 -9.30076 -8.99754 -8.77774 -7.75253 -6.27559 -4.29440 2.01498 3.10121 3.19031 3.21312 3.26796 3.76378 4.18664 4.19947 4.75129 4.79520 4.93821 5.03705 5.07820 5.14992 5.20699 5.31693 5.33065 5.41990 5.49189 5.57241 5.72538 5.80982 5.87425 5.89567 5.91156 5.95187 5.96145 6.01056 6.06690 6.15770 6.19964 6.22597 6.28452 6.29573 6.34566 6.42938 6.53721 6.56431 6.62086 6.67262 6.75181 7.31297 7.38815 7.54589 8.09565 8.36445 8.77991 8.90889 9.31783 10.84889 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009946 B = 0.007583 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.557042 B = 3691.471211 C = 5228.281137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.136 4.136 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.207 3.793 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.889 5.889 11 Si 0.866 3.134 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.532 3.468 16 O -0.565 6.565 17 C -0.116 4.116 18 H 0.116 0.884 19 C -0.100 4.100 20 C -0.169 4.169 21 C 0.367 3.633 22 O -0.468 6.468 23 C -0.166 4.166 24 C -0.060 4.060 25 H 0.078 0.922 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 9.173 -3.741 9.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.194 4.194 4 C -0.002 4.002 5 N -0.317 5.317 6 C 0.086 3.914 7 C -0.579 4.579 8 H 0.097 0.903 9 C -0.126 4.126 10 N -0.526 5.526 11 Si 0.693 3.307 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.188 1.188 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.137 4.137 18 H 0.134 0.866 19 C -0.138 4.138 20 C -0.207 4.207 21 C 0.243 3.757 22 O -0.342 6.342 23 C -0.204 4.204 24 C -0.079 4.079 25 H 0.097 0.903 26 C -0.207 4.207 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.517 9.826 -3.353 10.395 hybrid contribution 0.276 -0.640 -1.044 1.255 sum -0.241 9.186 -4.397 10.187 Atomic orbital electron populations 1.21749 0.95106 1.01681 1.01437 1.21516 0.95480 0.96849 0.99428 1.21752 1.00779 0.95649 1.01207 1.21405 0.80676 1.00696 0.97417 1.47871 1.05653 1.26078 1.52126 1.19819 0.93493 0.85247 0.92858 1.21383 1.41913 0.96361 0.98216 0.90271 1.24866 0.95054 0.95464 0.97229 1.69882 1.43326 1.04103 1.35294 0.87002 0.79726 0.78139 0.85860 1.19790 1.20882 1.18842 1.20134 0.88599 0.80754 0.78502 1.90589 1.75698 1.37656 1.40543 1.21534 0.93193 1.03133 0.95859 0.86648 1.21398 0.93630 1.00257 0.98498 1.22319 0.96569 1.04836 0.96945 1.24950 0.79817 0.78725 0.92203 1.90377 1.26373 1.29443 1.88036 1.22435 0.97690 1.02851 0.97395 1.20838 0.91325 1.01142 0.94614 0.90321 1.21860 1.01998 1.00372 0.96440 0.92726 0.92961 0.92575 0.91277 0.92334 0.93168 0.93762 0.90537 0.90399 0.94966 0.95226 0.92344 0.90378 0.91039 0.87873 0.89287 0.89300 0.87752 0.91410 0.93024 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.11 -1.62 3.12 -90.62 -0.28 -1.90 16 3 C -0.14 -1.93 8.16 37.16 0.30 -1.63 16 4 C 0.12 2.06 4.97 -4.04 -0.02 2.04 16 5 N -0.59 -10.99 2.28 -175.06 -0.40 -11.39 16 6 C 0.21 4.21 3.88 -5.20 -0.02 4.19 16 7 C -0.54 -13.31 9.71 -34.44 -0.33 -13.65 16 8 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 9 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 10 N -0.89 -24.70 13.96 55.43 0.77 -23.92 16 11 Si 0.87 18.73 27.47 -169.99 -4.67 14.06 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.26 -5.39 6.54 56.52 0.37 -5.03 16 15 C 0.53 9.73 4.39 -10.99 -0.05 9.68 16 16 O -0.56 -11.26 14.28 5.56 0.08 -11.18 16 17 C -0.12 -1.85 1.24 -91.81 -0.11 -1.96 16 18 H 0.12 2.00 5.99 -51.93 -0.31 1.69 16 19 C -0.10 -1.34 5.14 -26.64 -0.14 -1.48 16 20 C -0.17 -2.07 6.17 -27.49 -0.17 -2.24 16 21 C 0.37 5.13 6.72 -28.48 -0.19 4.94 16 22 O -0.47 -7.82 17.89 5.99 0.11 -7.71 16 23 C -0.17 -2.19 5.45 -27.49 -0.15 -2.34 16 24 C -0.06 -0.90 1.94 -90.52 -0.18 -1.07 16 25 H 0.08 1.22 7.97 -51.93 -0.41 0.80 16 26 C -0.15 -2.38 8.76 37.16 0.33 -2.05 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 31 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.05 0.76 7.05 -51.93 -0.37 0.40 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.08 1.37 7.21 -51.93 -0.37 1.00 16 36 H 0.03 0.66 7.12 -51.93 -0.37 0.29 16 37 H 0.03 0.57 5.56 -51.93 -0.29 0.28 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.18 6.68 -51.93 -0.35 0.84 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -28.59 366.88 -7.74 -36.33 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.40 Total: 5.22 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.77 Total: -6.94 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.37 Total: -35.31 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.19 Total: -18.90 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.67 Total: 14.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.59 -7.74 -36.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.555 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds