Wall clock time and date at job start Tue Mar 31 2020 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46935 * 2 1 4 4 C 1.52998 * 109.46797 * 119.99693 * 2 1 3 5 5 N 1.46506 * 109.46862 * 174.47831 * 4 2 1 6 6 C 1.46498 * 120.00061 * 275.42804 * 5 4 2 7 7 C 1.50694 * 109.46935 * 269.99608 * 6 5 4 8 8 H 1.08003 * 120.00351 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99983 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00205 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99786 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47170 * 89.99914 * 11 9 7 13 13 H 1.48505 * 109.47070 * 210.00269 * 11 9 7 14 14 H 1.48499 * 109.47060 * 329.99769 * 11 9 7 15 15 C 1.34775 * 119.99401 * 95.42547 * 5 4 2 16 16 O 1.21280 * 120.00494 * 5.00322 * 15 5 4 17 17 C 1.50697 * 119.99594 * 185.00046 * 15 5 4 18 18 H 1.09000 * 109.35788 * 333.83887 * 17 15 5 19 19 C 1.52964 * 109.41726 * 93.66266 * 17 15 5 20 20 C 1.53221 * 109.40780 * 183.70168 * 19 17 15 21 21 C 1.51261 * 108.53855 * 305.37351 * 20 19 17 22 22 O 1.20769 * 120.85110 * 231.36632 * 21 20 19 23 23 C 1.51263 * 118.30118 * 51.34880 * 21 20 19 24 24 C 1.52957 * 109.41630 * 214.01422 * 17 15 5 25 25 H 1.09000 * 109.48466 * 296.28158 * 24 17 15 26 26 C 1.53001 * 109.47983 * 56.30417 * 24 17 15 27 27 H 1.08998 * 109.47667 * 300.00200 * 1 2 3 28 28 H 1.09002 * 109.47347 * 60.00081 * 1 2 3 29 29 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46970 * 239.99829 * 2 1 3 31 31 H 1.08997 * 109.46981 * 66.04507 * 3 2 1 32 32 H 1.08996 * 109.47170 * 186.04467 * 3 2 1 33 33 H 1.09003 * 109.46921 * 306.04524 * 3 2 1 34 34 H 1.09002 * 109.46982 * 54.48507 * 4 2 1 35 35 H 1.08997 * 109.47289 * 294.48319 * 4 2 1 36 36 H 1.08998 * 109.47235 * 30.00363 * 6 5 4 37 37 H 1.09003 * 109.46544 * 149.99990 * 6 5 4 38 38 H 0.96999 * 120.00269 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.48181 * 303.68849 * 19 17 15 40 40 H 1.09003 * 109.48103 * 63.70641 * 19 17 15 41 41 H 1.09001 * 109.62577 * 65.09174 * 20 19 17 42 42 H 1.09006 * 109.62470 * 185.65630 * 20 19 17 43 43 H 1.09003 * 109.62673 * 188.94028 * 23 21 20 44 44 H 1.09000 * 109.63092 * 68.36925 * 23 21 20 45 45 H 1.08992 * 109.47151 * 54.47773 * 26 24 17 46 46 H 1.09000 * 109.47261 * 174.48052 * 26 24 17 47 47 H 1.09004 * 109.46795 * 294.47718 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4989 -0.8374 1.1847 6 6 4.1137 -1.9478 0.4532 7 6 4.3144 -3.1140 1.3862 8 1 4.0137 -3.0360 2.4206 9 6 4.8819 -4.2807 0.9194 10 7 5.0566 -5.2987 1.7335 11 14 5.4026 -4.4154 -0.8695 12 1 6.8111 -3.9664 -1.0102 13 1 5.2864 -5.8276 -1.3139 14 1 4.5242 -3.5593 -1.7065 15 6 4.2755 0.0775 1.7983 16 8 3.7692 0.9442 2.4789 17 6 5.7730 0.0233 1.6387 18 1 6.0765 -1.0011 1.4227 19 6 6.1945 0.9327 0.4832 20 6 7.7053 0.8068 0.2611 21 6 8.4091 1.0939 1.5689 22 8 9.3066 1.9000 1.6252 23 6 7.9598 0.3460 2.8045 24 6 6.4397 0.4886 2.9343 25 1 6.1869 1.5327 3.1186 26 6 5.9440 -0.3698 4.0999 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7677 1.9241 0.9391 32 1 3.1245 1.4445 -0.1082 33 1 1.5909 1.9866 -0.8310 34 1 1.5981 -1.7164 1.3001 35 1 1.7595 -0.1535 2.1365 36 1 3.4620 -2.2471 -0.3677 37 1 5.0776 -1.6311 0.0549 38 1 5.4562 -6.1193 1.4052 39 1 5.6677 0.6359 -0.4238 40 1 5.9473 1.9663 0.7253 41 1 7.9439 -0.2043 -0.0688 42 1 8.0257 1.5260 -0.4927 43 1 8.4437 0.7691 3.6848 44 1 8.2219 -0.7078 2.7102 45 1 6.1091 -1.4227 3.8716 46 1 6.4905 -0.1042 5.0048 47 1 4.8793 -0.1938 4.2536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625794821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:48 Heat of formation + Delta-G solvation = -120.704061 kcal Electronic energy + Delta-G solvation = -25999.710639 eV Core-core repulsion = 22566.697601 eV Total energy + Delta-G solvation = -3433.013039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70254 -40.39940 -38.01247 -36.97798 -35.67257 -34.21814 -33.51944 -30.57597 -29.90741 -28.20711 -27.95284 -26.78181 -24.52256 -23.69348 -22.38005 -21.05696 -20.30495 -19.64624 -18.97980 -18.05657 -17.28556 -16.64582 -16.51589 -16.32805 -16.00676 -15.73557 -15.54412 -15.19319 -15.03327 -14.46942 -14.36906 -14.21495 -13.83301 -13.61076 -13.41948 -13.27408 -13.17057 -13.06667 -12.94020 -12.84036 -12.63219 -12.49275 -12.42779 -12.25956 -11.94744 -11.87602 -11.81000 -11.73535 -11.63923 -11.53660 -11.41374 -10.75491 -10.45069 -10.41486 -9.30629 -8.24727 -6.31974 0.90442 1.42584 1.46016 1.54278 1.81674 2.33897 2.38414 3.09500 3.11868 3.55025 3.65068 3.68085 3.95051 3.95997 4.07881 4.19199 4.24696 4.27010 4.33529 4.43168 4.53548 4.65845 4.69182 4.70515 4.74419 4.77722 4.81084 4.85724 4.87842 4.89407 4.98845 5.01403 5.05448 5.06777 5.10502 5.20448 5.22731 5.27122 5.40133 5.42324 5.49036 5.50700 5.80263 6.25390 6.45001 6.69106 6.77732 7.30659 7.44784 8.91314 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.009946 B = 0.007583 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.557042 B = 3691.471211 C = 5228.281137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.217 3.783 7 C -0.536 4.536 8 H 0.028 0.972 9 C 0.022 3.978 10 N -0.942 5.942 11 Si 0.932 3.068 12 H -0.254 1.254 13 H -0.292 1.292 14 H -0.237 1.237 15 C 0.529 3.471 16 O -0.584 6.584 17 C -0.115 4.115 18 H 0.103 0.897 19 C -0.094 4.094 20 C -0.162 4.162 21 C 0.371 3.629 22 O -0.496 6.496 23 C -0.161 4.161 24 C -0.055 4.055 25 H 0.075 0.925 26 C -0.143 4.143 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 10.365 -6.495 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.187 4.187 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.095 3.905 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.177 4.177 10 N -0.582 5.582 11 Si 0.755 3.245 12 H -0.178 1.178 13 H -0.218 1.218 14 H -0.160 1.160 15 C 0.318 3.682 16 O -0.466 6.466 17 C -0.136 4.136 18 H 0.121 0.879 19 C -0.132 4.132 20 C -0.200 4.200 21 C 0.250 3.750 22 O -0.372 6.372 23 C -0.199 4.199 24 C -0.074 4.074 25 H 0.093 0.907 26 C -0.200 4.200 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.131 0.869 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.006 11.044 -6.109 12.621 hybrid contribution 0.023 -1.024 -0.018 1.024 sum 0.028 10.020 -6.127 11.745 Atomic orbital electron populations 1.21723 0.93151 1.02199 1.02464 1.21459 0.97068 0.96506 0.97542 1.21683 1.00110 0.95546 1.01379 1.21503 0.80034 1.00294 0.98685 1.47931 1.06396 1.25741 1.52214 1.19651 0.94806 0.84112 0.91976 1.21507 1.41055 0.98186 0.96737 0.95321 1.25742 0.95032 0.94783 1.02169 1.70056 1.45193 1.05001 1.37939 0.85941 0.80631 0.78034 0.79911 1.17847 1.21837 1.16042 1.20574 0.89627 0.80224 0.77755 1.90575 1.76322 1.38491 1.41219 1.21567 0.91382 1.03173 0.97526 0.87859 1.21377 0.94665 0.99492 0.97639 1.22320 0.95048 1.06325 0.96270 1.25174 0.79154 0.77730 0.92980 1.90380 1.27779 1.30570 1.88462 1.22399 0.96034 1.03481 0.97977 1.20770 0.92577 1.00395 0.93668 0.90689 1.21773 1.00631 0.99395 0.98203 0.92684 0.90945 0.92367 0.91059 0.93808 0.94352 0.91378 0.91690 0.91725 0.94032 0.92959 0.92452 0.89170 0.91042 0.86291 0.87504 0.88384 0.86923 0.93368 0.90824 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.11 -2.87 3.12 -10.79 -0.03 -2.91 16 3 C -0.13 -3.44 8.16 71.98 0.59 -2.86 16 4 C 0.12 4.04 4.97 86.38 0.43 4.46 16 5 N -0.59 -22.13 2.28 -826.17 -1.88 -24.01 16 6 C 0.22 8.55 3.88 85.63 0.33 8.88 16 7 C -0.54 -26.92 9.71 25.60 0.25 -26.67 16 8 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 9 C 0.02 1.11 5.47 84.66 0.46 1.57 16 10 N -0.94 -53.85 13.96 21.45 0.30 -53.55 16 11 Si 0.93 37.24 27.47 68.60 1.88 39.12 16 12 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 13 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.24 -8.42 6.54 99.48 0.65 -7.77 16 15 C 0.53 19.33 4.39 87.66 0.38 19.72 16 16 O -0.58 -23.65 14.28 -3.03 -0.04 -23.70 16 17 C -0.12 -3.57 1.24 -11.57 -0.01 -3.58 16 18 H 0.10 3.47 5.99 -2.39 -0.01 3.45 16 19 C -0.09 -2.28 5.14 30.66 0.16 -2.13 16 20 C -0.16 -3.44 6.17 30.10 0.19 -3.25 16 21 C 0.37 9.55 6.72 29.46 0.20 9.75 16 22 O -0.50 -15.61 17.89 -1.48 -0.03 -15.64 16 23 C -0.16 -4.02 5.45 30.10 0.16 -3.85 16 24 C -0.06 -1.61 1.94 -10.73 -0.02 -1.63 16 25 H 0.07 2.27 7.97 -2.39 -0.02 2.26 16 26 C -0.14 -4.65 8.76 71.98 0.63 -4.02 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 31 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 32 H 0.04 1.09 7.05 -2.39 -0.02 1.07 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 2.32 8.11 -2.39 -0.02 2.30 16 35 H 0.06 2.36 7.21 -2.39 -0.02 2.34 16 36 H 0.04 1.59 7.12 -2.39 -0.02 1.58 16 37 H 0.05 1.87 5.56 -2.39 -0.01 1.85 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.09 2.01 8.11 -2.39 -0.02 1.99 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.04 1.47 6.68 -2.38 -0.02 1.45 16 Total: -1.00 -63.67 366.88 5.47 -58.20 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.87 Total: 28.43 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.37 Total: -8.85 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.58 Total: -77.57 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.07 Total: -39.34 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 1.88 Total: 39.12 kcal Total: -63.67 5.47 -58.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.508 kcal (2) G-P(sol) polarization free energy of solvation -63.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds