Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 120.00106 * 2 1 4 4 S 1.71193 * 119.99814 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00035 * 180.27663 * 3 2 1 6 6 C 1.40136 * 120.00207 * 175.11150 * 5 3 2 7 7 C 1.38643 * 120.09618 * 46.65164 * 6 5 3 8 8 C 1.38267 * 120.00517 * 179.76983 * 7 6 5 9 9 C 1.38294 * 120.20363 * 0.51475 * 8 7 6 10 10 C 1.38210 * 120.20079 * 359.74045 * 9 8 7 11 11 C 1.38772 * 119.98938 * 0.02562 * 10 9 8 12 12 S 1.76197 * 120.10187 * 179.97438 * 11 10 9 13 13 C 1.81406 * 103.00083 * 357.78683 * 12 11 10 14 14 H 1.09004 * 109.47007 * 48.39105 * 13 12 11 15 15 C 1.52994 * 109.47089 * 168.38604 * 13 12 11 16 16 C 1.50695 * 109.47078 * 288.39032 * 13 12 11 17 17 H 1.07999 * 120.00580 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99959 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99646 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 119.99885 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47425 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47251 * 120.00306 * 20 18 16 23 23 H 1.48508 * 109.46914 * 239.99877 * 20 18 16 24 24 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46811 * 300.00347 * 1 2 3 26 26 H 1.09003 * 109.46776 * 60.00154 * 1 2 3 27 27 H 0.97001 * 120.00011 * 179.97438 * 2 1 3 28 28 H 0.97004 * 119.99575 * 355.10734 * 5 3 2 29 29 H 1.07997 * 119.99902 * 0.02997 * 7 6 5 30 30 H 1.07998 * 119.89427 * 180.25719 * 8 7 6 31 31 H 1.07997 * 119.89561 * 179.76961 * 9 8 7 32 32 H 1.08000 * 120.00201 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47435 * 307.12999 * 15 13 12 34 34 H 1.09001 * 109.47310 * 67.12901 * 15 13 12 35 35 H 1.09003 * 109.47180 * 187.12440 * 15 13 12 36 36 H 0.96997 * 119.99853 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 16 1.2830 2.6498 -0.0007 5 7 3.4867 1.1672 -0.0056 6 6 4.1870 2.3766 -0.1091 7 6 3.8249 3.4592 0.6778 8 6 4.5202 4.6501 0.5776 9 6 5.5708 4.7695 -0.3137 10 6 5.9356 3.6974 -1.1060 11 6 5.2465 2.4968 -1.0087 12 16 5.7087 1.1283 -2.0178 13 6 7.0547 1.8034 -3.0294 14 1 7.7671 2.3214 -2.3873 15 6 7.7640 0.6625 -3.7615 16 6 6.4894 2.7717 -4.0362 17 1 5.4266 2.9618 -4.0650 18 6 7.3290 3.4152 -4.9206 19 7 8.6231 3.1834 -4.8859 20 14 6.6281 4.6149 -6.1691 21 1 5.1547 4.6972 -6.0036 22 1 7.2264 5.9572 -5.9557 23 1 6.9461 4.1437 -7.5410 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.9719 0.3300 0.0620 29 1 3.0023 3.3710 1.3720 30 1 4.2392 5.4909 1.1944 31 1 6.1081 5.7032 -0.3905 32 1 6.7564 3.7943 -1.8012 33 1 8.0620 -0.1007 -3.0427 34 1 7.0871 0.2255 -4.4956 35 1 8.6481 1.0498 -4.2678 36 1 9.2137 3.6363 -5.5078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731319709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = 44.630380 kcal Electronic energy + Delta-G solvation = -19118.196766 eV Core-core repulsion = 16240.766808 eV Total energy + Delta-G solvation = -2877.429957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 296.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76309 -37.88620 -35.10019 -34.15195 -30.71159 -30.29570 -29.55393 -26.80030 -25.41893 -24.04959 -22.45145 -22.06352 -21.07527 -18.66900 -18.07188 -16.66087 -16.39745 -15.74538 -15.43832 -15.20986 -14.98327 -14.35842 -14.23323 -13.52370 -13.33015 -13.00639 -12.89244 -12.62731 -12.06517 -11.81185 -11.63549 -11.26062 -11.04921 -11.01331 -10.88689 -10.54586 -10.41529 -10.21913 -9.71998 -9.45491 -9.10435 -9.03341 -8.55847 -8.30766 -7.71309 -6.92749 -6.66291 -6.18902 -4.32003 1.18074 1.77022 1.93709 2.11308 2.43808 2.70274 3.21135 3.30146 3.35780 3.46592 3.59038 4.23591 4.30889 4.85276 5.08628 5.30141 5.44031 5.52302 5.58253 5.60920 5.86465 5.97686 6.13374 6.33464 6.47116 6.54099 6.62309 6.67079 6.75064 6.81095 6.99441 7.10171 7.22725 7.26668 7.49401 7.51096 7.75088 7.94226 8.70768 9.33950 10.81575 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.004953 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.947445 B = 5651.748663 C = 5984.198685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.690 5.690 3 C 0.560 3.440 4 S -0.629 6.629 5 N -0.615 5.615 6 C 0.113 3.887 7 C -0.057 4.057 8 C -0.137 4.137 9 C -0.097 4.097 10 C -0.115 4.115 11 C -0.049 4.049 12 S -0.198 6.198 13 C 0.098 3.902 14 H 0.053 0.947 15 C -0.124 4.124 16 C -0.519 4.519 17 H 0.068 0.932 18 C 0.071 3.929 19 N -0.888 5.888 20 Si 0.897 3.103 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.282 1.282 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.399 0.601 28 H 0.405 0.595 29 H 0.141 0.859 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.151 0.849 33 H 0.019 0.981 34 H 0.039 0.961 35 H 0.098 0.902 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 -6.588 10.926 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.319 5.319 3 C 0.201 3.799 4 S -0.501 6.501 5 N -0.238 5.238 6 C 0.013 3.987 7 C -0.080 4.080 8 C -0.160 4.160 9 C -0.118 4.118 10 C -0.139 4.139 11 C -0.165 4.165 12 S 0.049 5.951 13 C -0.029 4.029 14 H 0.071 0.929 15 C -0.184 4.184 16 C -0.558 4.558 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.208 1.208 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.234 0.766 28 H 0.244 0.756 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.169 0.831 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.997 -6.766 10.688 15.523 hybrid contribution 1.027 0.326 -0.878 1.390 sum -7.970 -6.440 9.810 14.186 Atomic orbital electron populations 1.21872 0.75790 1.02518 1.04757 1.44765 1.09117 1.05471 1.72582 1.22335 0.84930 0.92421 0.80174 1.93346 1.67160 1.16163 1.73452 1.42127 1.02791 1.09956 1.68970 1.16821 0.95422 0.86089 1.00327 1.21148 0.97314 0.91797 0.97720 1.20872 0.96906 0.97385 1.00825 1.21144 0.96866 0.98269 0.95504 1.21464 1.01292 0.91240 0.99912 1.21529 0.98804 0.98901 0.97256 1.84522 1.49541 1.17424 1.43572 1.21132 0.89880 0.96685 0.95193 0.92904 1.21649 1.02193 0.95721 0.98801 1.21285 0.94457 1.23567 1.16442 0.91361 1.24946 0.94754 0.96568 0.97050 1.69874 1.02694 1.42494 1.37471 0.86427 0.79736 0.80623 0.80841 1.19370 1.20697 1.20809 0.90251 0.90357 0.90230 0.76564 0.75637 0.84113 0.86156 0.86164 0.83128 0.96155 0.94156 0.88349 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.16 59.85 0.61 1.37 16 2 N -0.69 -6.68 5.72 -68.83 -0.39 -7.08 16 3 C 0.56 7.96 7.85 -86.92 -0.68 7.28 16 4 S -0.63 -11.40 24.93 -107.50 -2.68 -14.08 16 5 N -0.61 -8.86 4.80 -11.25 -0.05 -8.91 16 6 C 0.11 1.97 5.91 -83.44 -0.49 1.48 16 7 C -0.06 -0.95 7.88 -39.42 -0.31 -1.26 16 8 C -0.14 -2.19 10.04 -39.55 -0.40 -2.59 16 9 C -0.10 -1.66 10.04 -39.57 -0.40 -2.06 16 10 C -0.11 -2.28 8.88 -39.39 -0.35 -2.63 16 11 C -0.05 -0.96 6.09 -38.91 -0.24 -1.20 16 12 S -0.20 -3.99 20.36 -107.50 -2.19 -6.18 16 13 C 0.10 2.30 1.99 -27.89 -0.06 2.24 16 14 H 0.05 1.31 6.91 -51.92 -0.36 0.95 16 15 C -0.12 -2.78 8.87 37.15 0.33 -2.45 16 16 C -0.52 -13.38 7.06 -34.44 -0.24 -13.63 16 17 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 18 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 19 N -0.89 -23.48 11.40 55.43 0.63 -22.85 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.68 7.99 -51.93 -0.42 0.27 16 26 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16 27 H 0.40 2.64 8.85 -40.82 -0.36 2.28 16 28 H 0.41 4.86 8.44 -40.82 -0.34 4.52 16 29 H 0.14 2.33 6.22 -47.61 -0.30 2.03 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.15 3.33 5.04 -52.49 -0.26 3.06 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.10 2.39 6.30 -51.93 -0.33 2.06 16 36 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -30.43 322.44 -11.60 -42.03 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.44 Total: 8.15 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.32 Total: -11.70 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.18 Total: -38.84 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -15.38 SS G_CDS: -4.87 Total: -20.25 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.43 -11.60 -42.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731319709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.661 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds