Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 120.00106 * 2 1 4 4 S 1.71193 * 119.99814 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00035 * 180.27663 * 3 2 1 6 6 C 1.40136 * 120.00207 * 175.11150 * 5 3 2 7 7 C 1.38643 * 120.09618 * 46.65164 * 6 5 3 8 8 C 1.38267 * 120.00517 * 179.76983 * 7 6 5 9 9 C 1.38294 * 120.20363 * 0.51475 * 8 7 6 10 10 C 1.38210 * 120.20079 * 359.74045 * 9 8 7 11 11 C 1.38772 * 119.98938 * 0.02562 * 10 9 8 12 12 S 1.76197 * 120.10187 * 179.97438 * 11 10 9 13 13 C 1.81406 * 103.00083 * 357.78683 * 12 11 10 14 14 H 1.09004 * 109.47007 * 48.39105 * 13 12 11 15 15 C 1.52994 * 109.47089 * 168.38604 * 13 12 11 16 16 C 1.50695 * 109.47078 * 288.39032 * 13 12 11 17 17 H 1.07999 * 120.00580 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99959 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99646 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 119.99885 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47425 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47251 * 120.00306 * 20 18 16 23 23 H 1.48508 * 109.46914 * 239.99877 * 20 18 16 24 24 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46811 * 300.00347 * 1 2 3 26 26 H 1.09003 * 109.46776 * 60.00154 * 1 2 3 27 27 H 0.97001 * 120.00011 * 179.97438 * 2 1 3 28 28 H 0.97004 * 119.99575 * 355.10734 * 5 3 2 29 29 H 1.07997 * 119.99902 * 0.02997 * 7 6 5 30 30 H 1.07998 * 119.89427 * 180.25719 * 8 7 6 31 31 H 1.07997 * 119.89561 * 179.76961 * 9 8 7 32 32 H 1.08000 * 120.00201 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47435 * 307.12999 * 15 13 12 34 34 H 1.09001 * 109.47310 * 67.12901 * 15 13 12 35 35 H 1.09003 * 109.47180 * 187.12440 * 15 13 12 36 36 H 0.96997 * 119.99853 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 16 1.2830 2.6498 -0.0007 5 7 3.4867 1.1672 -0.0056 6 6 4.1870 2.3766 -0.1091 7 6 3.8249 3.4592 0.6778 8 6 4.5202 4.6501 0.5776 9 6 5.5708 4.7695 -0.3137 10 6 5.9356 3.6974 -1.1060 11 6 5.2465 2.4968 -1.0087 12 16 5.7087 1.1283 -2.0178 13 6 7.0547 1.8034 -3.0294 14 1 7.7671 2.3214 -2.3873 15 6 7.7640 0.6625 -3.7615 16 6 6.4894 2.7717 -4.0362 17 1 5.4266 2.9618 -4.0650 18 6 7.3290 3.4152 -4.9206 19 7 8.6231 3.1834 -4.8859 20 14 6.6281 4.6149 -6.1691 21 1 5.1547 4.6972 -6.0036 22 1 7.2264 5.9572 -5.9557 23 1 6.9461 4.1437 -7.5410 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.9719 0.3300 0.0620 29 1 3.0023 3.3710 1.3720 30 1 4.2392 5.4909 1.1944 31 1 6.1081 5.7032 -0.3905 32 1 6.7564 3.7943 -1.8012 33 1 8.0620 -0.1007 -3.0427 34 1 7.0871 0.2255 -4.4956 35 1 8.6481 1.0498 -4.2678 36 1 9.2137 3.6363 -5.5078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731319709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = 27.773544 kcal Electronic energy + Delta-G solvation = -19118.927733 eV Core-core repulsion = 16240.766808 eV Total energy + Delta-G solvation = -2878.160924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 296.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01928 -39.07095 -36.36837 -35.92598 -32.47051 -31.86522 -30.81961 -27.75501 -27.35303 -25.18858 -23.94634 -23.50298 -22.66878 -19.77833 -19.36018 -18.52780 -17.91720 -17.06846 -16.96378 -16.43912 -16.21302 -15.76374 -15.49910 -15.15051 -14.93248 -14.63600 -14.18808 -13.50014 -13.42184 -13.26183 -13.24735 -12.90935 -12.80860 -12.52572 -12.36727 -12.31320 -12.25496 -11.75571 -11.33655 -10.92531 -10.80505 -10.61356 -10.42698 -9.59960 -9.06087 -8.35481 -8.31859 -8.03888 -6.35809 -0.05748 0.44444 0.59255 0.83321 0.93191 1.35480 1.40112 1.50230 1.54511 1.80573 2.37901 2.53026 2.85852 3.07311 4.04602 4.22614 4.28245 4.38059 4.56043 4.60312 4.60945 4.65692 4.81564 4.85611 4.90801 4.96762 5.14901 5.22778 5.32996 5.45716 5.54557 5.59595 5.69217 5.75236 5.84334 6.02085 6.13650 6.29139 6.66304 7.31429 8.81963 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.004953 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.947445 B = 5651.748663 C = 5984.198685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.661 5.661 3 C 0.575 3.425 4 S -0.707 6.707 5 N -0.610 5.610 6 C 0.117 3.883 7 C -0.059 4.059 8 C -0.127 4.127 9 C -0.099 4.099 10 C -0.136 4.136 11 C -0.075 4.075 12 S -0.173 6.173 13 C 0.091 3.909 14 H 0.033 0.967 15 C -0.113 4.113 16 C -0.523 4.523 17 H 0.047 0.953 18 C 0.035 3.965 19 N -0.906 5.906 20 Si 0.947 3.053 21 H -0.279 1.279 22 H -0.275 1.275 23 H -0.276 1.276 24 H 0.125 0.875 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.420 0.580 28 H 0.419 0.581 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.043 0.957 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 -7.545 11.911 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.289 5.289 3 C 0.212 3.788 4 S -0.580 6.580 5 N -0.236 5.236 6 C 0.017 3.983 7 C -0.082 4.082 8 C -0.149 4.149 9 C -0.120 4.120 10 C -0.161 4.161 11 C -0.191 4.191 12 S 0.074 5.926 13 C -0.036 4.036 14 H 0.051 0.949 15 C -0.173 4.173 16 C -0.562 4.562 17 H 0.065 0.935 18 C -0.168 4.168 19 N -0.544 5.544 20 Si 0.773 3.227 21 H -0.204 1.204 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.144 0.856 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.259 0.741 28 H 0.259 0.741 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.179 -7.784 11.685 17.342 hybrid contribution 1.299 0.553 -1.078 1.776 sum -8.880 -7.231 10.607 15.609 Atomic orbital electron populations 1.22103 0.74263 1.05229 1.03710 1.44850 1.10014 1.04893 1.69161 1.21930 0.84485 0.92553 0.79868 1.93504 1.68141 1.19446 1.76920 1.41933 1.02838 1.09700 1.69114 1.16849 0.94700 0.87304 0.99420 1.21352 0.97250 0.91966 0.97617 1.21248 0.95547 0.98038 1.00026 1.21370 0.97300 0.98274 0.95012 1.21333 1.01312 0.92686 1.00723 1.21611 1.00294 0.98776 0.98421 1.84098 1.48155 1.17210 1.43182 1.20924 0.90965 0.96666 0.95088 0.94936 1.21486 1.01073 0.95800 0.98962 1.21279 0.93350 1.24397 1.17153 0.93482 1.25502 0.95056 0.97777 0.98417 1.69949 1.03286 1.43143 1.38052 0.85664 0.78412 0.79307 0.79348 1.20387 1.20090 1.20135 0.85639 0.90766 0.91866 0.74085 0.74067 0.83547 0.82900 0.84040 0.86029 0.93808 0.94654 0.90422 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.16 127.77 1.30 2.49 16 2 N -0.66 -10.80 5.72 -371.69 -2.13 -12.93 16 3 C 0.57 15.23 7.85 179.05 1.41 16.64 16 4 S -0.71 -25.14 24.93 -56.49 -1.41 -26.55 16 5 N -0.61 -16.50 4.80 -189.50 -0.91 -17.41 16 6 C 0.12 3.98 5.91 38.22 0.23 4.20 16 7 C -0.06 -1.89 7.88 22.37 0.18 -1.71 16 8 C -0.13 -3.80 10.04 22.29 0.22 -3.58 16 9 C -0.10 -3.31 10.04 22.28 0.22 -3.09 16 10 C -0.14 -5.49 8.88 22.39 0.20 -5.30 16 11 C -0.08 -2.95 6.09 22.70 0.14 -2.81 16 12 S -0.17 -6.93 20.36 -56.49 -1.15 -8.08 16 13 C 0.09 4.36 1.99 29.84 0.06 4.42 16 14 H 0.03 1.68 6.91 -2.39 -0.02 1.66 16 15 C -0.11 -5.13 8.87 71.98 0.64 -4.49 16 16 C -0.52 -27.59 7.06 25.60 0.18 -27.41 16 17 H 0.05 2.64 7.71 -2.91 -0.02 2.62 16 18 C 0.03 1.82 5.30 84.66 0.45 2.27 16 19 N -0.91 -48.65 11.40 21.45 0.24 -48.40 16 20 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 1.13 7.99 -2.39 -0.02 1.11 16 26 H 0.06 1.13 7.99 -2.39 -0.02 1.11 16 27 H 0.42 3.89 8.85 -92.71 -0.82 3.07 16 28 H 0.42 9.07 8.44 -92.70 -0.78 8.29 16 29 H 0.15 4.63 6.22 -6.01 -0.04 4.59 16 30 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.12 5.61 5.04 -2.91 -0.01 5.60 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.08 3.83 6.30 -2.39 -0.02 3.81 16 36 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -67.31 322.44 1.39 -65.91 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.50 Total: 20.79 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 5.22 Total: -18.37 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.79 Total: -78.74 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -32.07 SS G_CDS: -2.56 Total: -34.63 kcal Total: -67.31 1.39 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731319709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.686 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds