Wall clock time and date at job start Tue Mar 31 2020 07:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38673 * 120.78728 * 2 1 4 4 C 1.38185 * 119.16219 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76819 * 359.97157 * 4 3 2 6 6 C 1.31860 * 121.72375 * 0.02863 * 5 4 3 7 7 C 1.38224 * 120.76066 * 0.27246 * 6 5 4 8 8 S 1.76201 * 120.41760 * 179.70464 * 7 6 5 9 9 O 1.42100 * 106.40431 * 355.02728 * 8 7 6 10 10 O 1.42098 * 106.40325 * 127.95225 * 8 7 6 11 11 N 1.65606 * 107.21823 * 241.48900 * 8 7 6 12 12 C 1.46494 * 119.99760 * 61.53003 * 11 8 7 13 13 C 1.52998 * 109.47206 * 165.67498 * 12 11 8 14 14 C 1.50703 * 115.54961 * 65.60726 * 13 12 11 15 15 H 1.07996 * 119.99912 * 264.59694 * 14 13 12 16 16 C 1.37875 * 119.99871 * 84.59714 * 14 13 12 17 17 N 1.31515 * 120.00364 * 1.98739 * 16 14 13 18 18 Si 1.86807 * 119.99957 * 181.98503 * 16 14 13 19 19 H 1.48501 * 109.46962 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47107 * 119.99906 * 18 16 14 21 21 H 1.48498 * 109.47286 * 240.00479 * 18 16 14 22 22 C 1.52998 * 117.50167 * 279.93976 * 13 12 11 23 23 C 1.53000 * 117.49985 * 211.27692 * 13 12 11 24 24 H 1.09003 * 109.46690 * 94.11091 * 1 2 3 25 25 H 1.09001 * 109.46775 * 214.10554 * 1 2 3 26 26 H 1.08997 * 109.47275 * 334.11154 * 1 2 3 27 27 H 1.08000 * 120.42466 * 0.04226 * 3 2 1 28 28 H 1.08002 * 119.61618 * 180.02562 * 4 3 2 29 29 H 1.08003 * 119.61818 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99988 * 241.52832 * 11 8 7 31 31 H 1.08996 * 109.47286 * 285.67559 * 12 11 8 32 32 H 1.09001 * 109.47547 * 45.67162 * 12 11 8 33 33 H 0.96999 * 120.00076 * 185.01166 * 17 16 14 34 34 H 1.09007 * 117.49619 * 359.97438 * 22 13 12 35 35 H 1.08995 * 117.50398 * 145.01969 * 22 13 12 36 36 H 1.09006 * 117.49889 * 214.97598 * 23 13 12 37 37 H 1.08994 * 117.49968 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2404 0.0002 -0.0005 6 6 3.5984 -1.1515 -0.0005 7 6 2.2167 -1.1908 -0.0062 8 16 1.3682 -2.7350 -0.0140 9 8 2.3656 -3.7404 -0.1309 10 8 0.4359 -2.6860 1.0573 11 7 0.4760 -2.7971 -1.4078 12 6 1.1464 -2.7471 -2.7094 13 6 0.1667 -3.1737 -3.8044 14 6 -1.0066 -2.2532 -4.0214 15 1 -1.9493 -2.4562 -3.5352 16 6 -0.8764 -1.1519 -4.8406 17 7 0.2596 -0.9262 -5.4635 18 14 -2.3139 0.0198 -5.0658 19 1 -3.4691 -0.4538 -4.2619 20 1 -1.9205 1.3784 -4.6136 21 1 -2.6945 0.0663 -6.5004 22 6 -0.0666 -4.6733 -3.9986 23 6 0.7433 -3.8844 -5.0305 24 1 -0.3633 -0.0737 -1.0251 25 1 -0.3633 -0.8509 0.5762 26 1 -0.3634 0.9245 0.4487 27 1 1.6967 2.1378 0.0007 28 1 4.1582 2.0755 -0.0001 29 1 4.1587 -2.0749 -0.0009 30 1 -0.4904 -2.8665 -1.3623 31 1 1.4879 -1.7304 -2.9034 32 1 2.0017 -3.4228 -2.7037 33 1 0.3758 -0.1143 -5.9814 34 1 0.4783 -5.3560 -3.3464 35 1 -1.0685 -4.9941 -4.2837 36 1 0.2737 -3.6864 -5.9941 37 1 1.8206 -4.0476 -5.0573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332149324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:42 Heat of formation + Delta-G solvation = -18.722402 kcal Electronic energy + Delta-G solvation = -22449.830464 eV Core-core repulsion = 19126.900453 eV Total energy + Delta-G solvation = -3322.930011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19523 -37.19291 -36.95588 -35.62308 -34.14093 -33.27900 -32.02633 -31.49925 -27.90625 -26.05608 -24.96763 -24.02869 -22.37441 -21.14451 -19.57646 -19.12534 -17.49033 -17.14133 -16.83030 -16.37072 -16.08682 -15.21977 -14.78473 -14.49546 -14.41374 -14.20361 -13.67684 -12.94627 -12.91994 -12.88442 -12.78013 -12.45694 -12.36192 -12.10558 -11.85697 -11.57515 -11.40043 -11.10778 -11.03667 -10.93837 -10.56281 -10.25241 -9.82105 -9.60672 -9.56184 -9.38628 -9.17164 -8.78796 -8.49108 -8.22049 -6.16666 -4.25099 0.53950 0.79163 1.16062 3.16143 3.27032 3.27968 3.29651 3.55693 3.95893 4.27397 4.35730 4.48821 4.58950 4.72460 5.08336 5.12207 5.24267 5.29194 5.39425 5.57652 5.69502 5.72328 5.80291 6.06848 6.15081 6.20552 6.28366 6.34884 6.50617 6.53953 6.72672 6.93461 7.06969 7.32549 7.50696 7.63415 7.73851 7.76349 8.28450 8.77733 9.42130 10.91217 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.006745 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.971128 B = 4150.247554 C = 4948.022125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.075 3.925 3 C -0.200 4.200 4 C 0.148 3.852 5 N -0.505 5.505 6 C 0.200 3.800 7 C -0.734 4.734 8 S 2.700 3.300 9 O -0.964 6.964 10 O -0.968 6.968 11 N -1.093 6.093 12 C 0.161 3.839 13 C 0.032 3.968 14 C -0.494 4.494 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.875 5.875 18 Si 0.885 3.115 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.209 4.209 23 C -0.146 4.146 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.174 0.826 30 H 0.422 0.578 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.260 0.740 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 3.128 8.965 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.067 3.933 3 C -0.220 4.220 4 C -0.008 4.008 5 N -0.214 5.214 6 C 0.041 3.959 7 C -0.821 4.821 8 S 2.787 3.213 9 O -0.954 6.954 10 O -0.958 6.958 11 N -0.856 5.856 12 C 0.035 3.965 13 C 0.030 3.970 14 C -0.532 4.532 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.512 5.512 18 Si 0.713 3.287 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.246 4.246 23 C -0.185 4.185 24 H 0.126 0.874 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.160 0.840 28 H 0.178 0.822 29 H 0.191 0.809 30 H 0.259 0.741 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.048 2.655 9.423 10.594 hybrid contribution -1.703 1.647 -0.621 2.449 sum 2.345 4.301 8.802 10.074 Atomic orbital electron populations 1.21606 0.89298 1.06000 1.05866 1.19968 0.96740 0.91546 0.85085 1.22132 0.95839 0.98951 1.05076 1.23053 0.91942 0.96476 0.89286 1.67828 1.40713 0.98471 1.14425 1.22631 0.89510 0.97193 0.86542 1.31905 1.07574 1.22040 1.20538 1.01710 0.73349 0.73396 0.72841 1.93552 1.60866 1.54434 1.86505 1.93531 1.62086 1.87042 1.53153 1.55138 1.19908 1.90281 1.20294 1.20922 0.93915 1.00512 0.81107 1.18908 0.96160 0.89057 0.92854 1.20429 0.95837 1.08877 1.28045 0.91987 1.24977 0.95707 0.97883 0.94527 1.70003 1.24427 1.25395 1.31337 0.86655 0.83030 0.80902 0.78161 1.19571 1.21032 1.21003 1.23029 1.00441 0.96431 1.04718 1.22527 0.96464 1.04152 0.95371 0.87412 0.87967 0.89746 0.84024 0.82206 0.80940 0.74123 0.91730 0.93168 0.92986 0.91331 0.90349 0.89626 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.30 36.01 0.33 -1.95 16 2 C 0.08 1.10 5.91 -104.32 -0.62 0.48 16 3 C -0.20 -2.53 9.80 -39.44 -0.39 -2.91 16 4 C 0.15 1.87 11.18 -17.55 -0.20 1.68 16 5 N -0.50 -7.58 10.36 -13.25 -0.14 -7.71 16 6 C 0.20 3.09 10.71 -17.54 -0.19 2.90 16 7 C -0.73 -11.52 5.82 -39.44 -0.23 -11.75 16 8 S 2.70 44.63 5.04 -107.50 -0.54 44.09 16 9 O -0.96 -17.76 16.61 -57.17 -0.95 -18.71 16 10 O -0.97 -16.96 15.74 -57.17 -0.90 -17.86 16 11 N -1.09 -18.90 5.69 -10.62 -0.06 -18.96 16 12 C 0.16 3.22 6.00 -4.05 -0.02 3.19 16 13 C 0.03 0.72 1.48 -155.66 -0.23 0.48 16 14 C -0.49 -11.93 8.51 -34.44 -0.29 -12.22 16 15 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 16 C 0.07 1.81 5.43 -17.82 -0.10 1.71 16 17 N -0.88 -22.78 12.73 55.43 0.71 -22.08 16 18 Si 0.88 19.39 29.54 -169.99 -5.02 14.37 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.21 -4.25 9.96 -26.69 -0.27 -4.52 16 23 C -0.15 -3.22 9.23 -26.69 -0.25 -3.47 16 24 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 25 H 0.10 1.41 5.38 -51.93 -0.28 1.13 16 26 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.17 2.40 7.36 -52.48 -0.39 2.01 16 30 H 0.42 6.98 8.40 -34.48 -0.29 6.69 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.05 0.97 7.80 -51.93 -0.40 0.56 16 33 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -29.68 328.48 -9.10 -38.79 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.71 Total: 9.49 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -2.44 Total: -26.37 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.51 Total: -48.76 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.85 Total: -36.57 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.54 Total: 44.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.68 -9.10 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332149324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.063 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds