Wall clock time and date at job start Tue Mar 31 2020 07:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38673 * 120.78728 * 2 1 4 4 C 1.38185 * 119.16219 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76819 * 359.97157 * 4 3 2 6 6 C 1.31860 * 121.72375 * 0.02863 * 5 4 3 7 7 C 1.38224 * 120.76066 * 0.27246 * 6 5 4 8 8 S 1.76201 * 120.41760 * 179.70464 * 7 6 5 9 9 O 1.42100 * 106.40431 * 355.02728 * 8 7 6 10 10 O 1.42098 * 106.40325 * 127.95225 * 8 7 6 11 11 N 1.65606 * 107.21823 * 241.48900 * 8 7 6 12 12 C 1.46494 * 119.99760 * 61.53003 * 11 8 7 13 13 C 1.52998 * 109.47206 * 165.67498 * 12 11 8 14 14 C 1.50703 * 115.54961 * 65.60726 * 13 12 11 15 15 H 1.07996 * 119.99912 * 264.59694 * 14 13 12 16 16 C 1.37875 * 119.99871 * 84.59714 * 14 13 12 17 17 N 1.31515 * 120.00364 * 1.98739 * 16 14 13 18 18 Si 1.86807 * 119.99957 * 181.98503 * 16 14 13 19 19 H 1.48501 * 109.46962 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47107 * 119.99906 * 18 16 14 21 21 H 1.48498 * 109.47286 * 240.00479 * 18 16 14 22 22 C 1.52998 * 117.50167 * 279.93976 * 13 12 11 23 23 C 1.53000 * 117.49985 * 211.27692 * 13 12 11 24 24 H 1.09003 * 109.46690 * 94.11091 * 1 2 3 25 25 H 1.09001 * 109.46775 * 214.10554 * 1 2 3 26 26 H 1.08997 * 109.47275 * 334.11154 * 1 2 3 27 27 H 1.08000 * 120.42466 * 0.04226 * 3 2 1 28 28 H 1.08002 * 119.61618 * 180.02562 * 4 3 2 29 29 H 1.08003 * 119.61818 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99988 * 241.52832 * 11 8 7 31 31 H 1.08996 * 109.47286 * 285.67559 * 12 11 8 32 32 H 1.09001 * 109.47547 * 45.67162 * 12 11 8 33 33 H 0.96999 * 120.00076 * 185.01166 * 17 16 14 34 34 H 1.09007 * 117.49619 * 359.97438 * 22 13 12 35 35 H 1.08995 * 117.50398 * 145.01969 * 22 13 12 36 36 H 1.09006 * 117.49889 * 214.97598 * 23 13 12 37 37 H 1.08994 * 117.49968 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2404 0.0002 -0.0005 6 6 3.5984 -1.1515 -0.0005 7 6 2.2167 -1.1908 -0.0062 8 16 1.3682 -2.7350 -0.0140 9 8 2.3656 -3.7404 -0.1309 10 8 0.4359 -2.6860 1.0573 11 7 0.4760 -2.7971 -1.4078 12 6 1.1464 -2.7471 -2.7094 13 6 0.1667 -3.1737 -3.8044 14 6 -1.0066 -2.2532 -4.0214 15 1 -1.9493 -2.4562 -3.5352 16 6 -0.8764 -1.1519 -4.8406 17 7 0.2596 -0.9262 -5.4635 18 14 -2.3139 0.0198 -5.0658 19 1 -3.4691 -0.4538 -4.2619 20 1 -1.9205 1.3784 -4.6136 21 1 -2.6945 0.0663 -6.5004 22 6 -0.0666 -4.6733 -3.9986 23 6 0.7433 -3.8844 -5.0305 24 1 -0.3633 -0.0737 -1.0251 25 1 -0.3633 -0.8509 0.5762 26 1 -0.3634 0.9245 0.4487 27 1 1.6967 2.1378 0.0007 28 1 4.1582 2.0755 -0.0001 29 1 4.1587 -2.0749 -0.0009 30 1 -0.4904 -2.8665 -1.3623 31 1 1.4879 -1.7304 -2.9034 32 1 2.0017 -3.4228 -2.7037 33 1 0.3758 -0.1143 -5.9814 34 1 0.4783 -5.3560 -3.3464 35 1 -1.0685 -4.9941 -4.2837 36 1 0.2737 -3.6864 -5.9941 37 1 1.8206 -4.0476 -5.0573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332149324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:42 Heat of formation + Delta-G solvation = -38.479297 kcal Electronic energy + Delta-G solvation = -22450.687187 eV Core-core repulsion = 19126.900453 eV Total energy + Delta-G solvation = -3323.786734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26130 -38.81743 -38.39457 -37.01889 -35.31847 -34.71727 -33.88937 -32.56724 -28.96500 -27.83458 -26.65440 -25.11897 -23.44357 -22.85691 -21.26273 -20.49673 -18.76828 -18.55231 -18.17423 -17.68158 -17.34851 -16.67106 -16.57472 -15.87909 -15.60396 -15.42292 -15.18990 -14.55224 -14.19853 -13.97251 -13.96005 -13.82932 -13.72080 -13.49317 -13.27989 -13.03397 -12.92022 -12.86077 -12.82590 -12.27552 -12.09832 -11.97119 -11.28947 -10.98838 -10.92954 -10.70562 -10.46490 -10.41096 -10.18709 -9.95058 -8.05882 -6.17924 -0.68449 -0.40252 0.08200 1.42010 1.48764 1.56419 1.95490 2.42564 2.45775 2.69153 3.21899 3.31491 3.36434 3.52299 3.54896 3.70029 3.97394 4.18994 4.25034 4.41768 4.55500 4.60226 4.61564 4.65260 4.66565 4.69565 4.81842 5.06676 5.07166 5.10409 5.30565 5.33205 5.51868 5.65012 5.74288 5.82151 6.23242 6.44058 6.69738 6.89356 7.51301 9.01716 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.006745 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.971128 B = 4150.247554 C = 4948.022125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.057 3.943 3 C -0.196 4.196 4 C 0.146 3.854 5 N -0.522 5.522 6 C 0.186 3.814 7 C -0.746 4.746 8 S 2.719 3.281 9 O -0.985 6.985 10 O -0.978 6.978 11 N -1.091 6.091 12 C 0.174 3.826 13 C 0.013 3.987 14 C -0.498 4.498 15 H 0.061 0.939 16 C 0.032 3.968 17 N -0.904 5.904 18 Si 0.939 3.061 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.292 1.292 22 C -0.189 4.189 23 C -0.156 4.156 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.177 0.823 28 H 0.200 0.800 29 H 0.178 0.822 30 H 0.425 0.575 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 4.382 9.863 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.049 3.951 3 C -0.216 4.216 4 C -0.009 4.009 5 N -0.232 5.232 6 C 0.027 3.973 7 C -0.836 4.836 8 S 2.808 3.192 9 O -0.975 6.975 10 O -0.968 6.968 11 N -0.853 5.853 12 C 0.048 3.952 13 C 0.011 3.989 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.169 4.169 17 N -0.541 5.541 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.219 1.219 22 C -0.226 4.226 23 C -0.195 4.195 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.194 0.806 28 H 0.217 0.783 29 H 0.194 0.806 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.705 3.875 10.332 11.640 hybrid contribution -1.581 1.298 -0.877 2.226 sum 2.124 5.174 9.454 10.985 Atomic orbital electron populations 1.21633 0.88664 1.07265 1.05245 1.20290 0.97479 0.91973 0.85389 1.22562 0.96004 0.99610 1.03428 1.23769 0.92542 0.97044 0.87496 1.67877 1.41236 0.99029 1.15040 1.22792 0.89569 0.97930 0.87008 1.31667 1.07750 1.21736 1.22410 1.00969 0.72718 0.73327 0.72150 1.93517 1.61318 1.55988 1.86664 1.93515 1.62584 1.87428 1.53279 1.55011 1.20089 1.90579 1.19610 1.20600 0.93628 0.99464 0.81513 1.19043 0.96343 0.89976 0.93579 1.20669 0.96380 1.09064 1.27433 0.92097 1.25556 0.97476 0.99312 0.94548 1.70107 1.25994 1.25759 1.32285 0.85803 0.80803 0.79407 0.77407 1.18878 1.20581 1.21895 1.23032 1.00407 0.95620 1.03534 1.22448 0.97039 1.05428 0.94561 0.88536 0.88809 0.86814 0.80580 0.78317 0.80551 0.73786 0.93498 0.92619 0.93293 0.89457 0.90126 0.91913 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 9.30 71.24 0.66 -3.64 16 2 C 0.06 1.58 5.91 -19.67 -0.12 1.46 16 3 C -0.20 -4.39 9.80 22.36 0.22 -4.17 16 4 C 0.15 3.30 11.18 84.67 0.95 4.25 16 5 N -0.52 -14.90 10.36 -195.84 -2.03 -16.93 16 6 C 0.19 5.64 10.71 84.69 0.91 6.55 16 7 C -0.75 -22.95 5.82 22.36 0.13 -22.82 16 8 S 2.72 89.02 5.04 -56.49 -0.28 88.74 16 9 O -0.98 -36.12 16.61 -128.00 -2.13 -38.25 16 10 O -0.98 -33.76 15.74 -128.00 -2.01 -35.77 16 11 N -1.09 -37.31 5.69 -187.51 -1.07 -38.37 16 12 C 0.17 6.94 6.00 86.38 0.52 7.45 16 13 C 0.01 0.55 1.48 -52.93 -0.08 0.47 16 14 C -0.50 -23.85 8.51 25.60 0.22 -23.63 16 15 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 16 C 0.03 1.57 5.43 84.65 0.46 2.03 16 17 N -0.90 -47.32 12.73 21.45 0.27 -47.04 16 18 Si 0.94 39.48 29.54 68.60 2.03 41.50 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.19 -7.48 9.96 30.62 0.30 -7.17 16 23 C -0.16 -6.86 9.23 30.62 0.28 -6.58 16 24 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.09 2.50 5.38 -2.39 -0.01 2.48 16 26 H 0.11 2.09 8.08 -2.39 -0.02 2.07 16 27 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.18 4.95 7.36 -2.91 -0.02 4.93 16 30 H 0.43 13.88 8.40 -96.74 -0.81 13.06 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.13 7.80 -2.39 -0.02 2.11 16 33 H 0.26 13.07 8.32 -92.71 -0.77 12.30 16 34 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 35 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 37 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -62.16 328.48 -0.49 -62.64 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.28 Total: 29.29 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 4.45 Total: -45.81 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -2.82 Total: -102.35 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -4.14 Total: -74.02 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 89.02 SS G_CDS: -0.28 Total: 88.74 kcal Total: -62.16 -0.49 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332149324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.165 kcal (2) G-P(sol) polarization free energy of solvation -62.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds