Wall clock time and date at job start Tue Mar 31 2020 07:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38467 * 119.83711 * 2 1 4 4 C 1.37821 * 120.24430 * 180.02562 * 3 2 1 5 5 C 1.39739 * 119.92348 * 0.02562 * 4 3 2 6 6 C 1.47568 * 120.16097 * 180.02562 * 5 4 3 7 7 O 1.21497 * 120.00024 * 185.19976 * 6 5 4 8 8 O 1.34726 * 120.00235 * 5.20580 * 6 5 4 9 9 C 1.45205 * 117.00333 * 185.08769 * 8 6 5 10 10 C 1.52995 * 109.47264 * 184.90217 * 9 8 6 11 11 C 1.50706 * 115.54617 * 301.66303 * 10 9 8 12 12 H 1.07994 * 119.99727 * 95.22999 * 11 10 9 13 13 C 1.37878 * 120.00013 * 275.21950 * 11 10 9 14 14 N 1.31519 * 119.99595 * 5.68959 * 13 11 10 15 15 Si 1.86796 * 120.00152 * 185.68214 * 13 11 10 16 16 H 1.48498 * 109.47133 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47177 * 300.00767 * 15 13 11 18 18 H 1.48497 * 109.46829 * 60.00536 * 15 13 11 19 19 C 1.53000 * 117.49981 * 87.33472 * 10 9 8 20 20 C 1.53002 * 117.49900 * 155.99822 * 10 9 8 21 21 C 1.39823 * 119.67669 * 0.27124 * 5 4 3 22 22 F 1.35103 * 120.12359 * 179.70356 * 21 5 4 23 23 C 1.38379 * 119.83622 * 180.02562 * 2 1 3 24 24 F 1.35099 * 119.96220 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47515 * 89.99535 * 1 2 3 26 26 H 1.09002 * 109.47461 * 210.00385 * 1 2 3 27 27 H 1.09010 * 109.47022 * 329.99676 * 1 2 3 28 28 H 1.08001 * 119.87346 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.03423 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47242 * 64.89203 * 9 8 6 31 31 H 1.09006 * 109.46386 * 304.89798 * 9 8 6 32 32 H 0.96992 * 120.00325 * 355.11006 * 14 13 11 33 33 H 1.09002 * 117.49231 * 215.00077 * 19 10 9 34 34 H 1.08996 * 117.49921 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.50044 * 359.96846 * 20 10 9 36 36 H 1.08994 * 117.49942 * 144.97638 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2011 0.0000 4 6 3.5741 1.2109 -0.0005 5 6 4.2797 0.0048 -0.0016 6 6 5.7554 0.0092 -0.0016 7 8 6.3660 -1.0368 -0.0979 8 8 6.4256 1.1730 0.1053 9 6 7.8715 1.1147 -0.0157 10 6 8.4620 2.5003 0.2526 11 6 7.9725 3.6017 -0.6522 12 1 7.1533 4.2325 -0.3404 13 6 8.5707 3.8041 -1.8778 14 7 9.4918 2.9686 -2.3059 15 14 8.0728 5.2647 -2.9304 16 1 8.8573 5.2566 -4.1912 17 1 6.6250 5.1753 -3.2481 18 1 8.3400 6.5232 -2.1887 19 6 8.7751 2.8658 1.7049 20 6 9.9150 2.5692 0.7271 21 6 3.5808 -1.2062 -0.0079 22 9 4.2539 -2.3776 -0.0150 23 6 2.1954 -1.2004 -0.0005 24 9 1.5158 -2.3680 -0.0016 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6512 2.1337 0.0004 29 1 4.1080 2.1497 -0.0009 30 1 8.1392 0.7942 -1.0225 31 1 8.2683 0.4040 0.7094 32 1 9.8012 2.2515 -1.7307 33 1 8.6270 3.9029 2.0060 34 1 8.5607 2.1189 2.4693 35 1 10.4499 1.6274 0.8487 36 1 10.5168 3.4110 0.3848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869680624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:38 Heat of formation + Delta-G solvation = -132.415252 kcal Electronic energy + Delta-G solvation = -23429.650921 eV Core-core repulsion = 19515.657681 eV Total energy + Delta-G solvation = -3913.993241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.60127 -48.65740 -40.16330 -38.84399 -37.07019 -35.46150 -33.19967 -31.94883 -30.60911 -28.45755 -26.72770 -24.87124 -23.25162 -22.97024 -21.46551 -20.90323 -19.60492 -18.32916 -17.49642 -17.26945 -16.79059 -16.57275 -16.40322 -15.70678 -15.56455 -15.02560 -14.68284 -14.45791 -14.07903 -13.77727 -13.75395 -13.37281 -13.28037 -12.82110 -12.60569 -12.38061 -12.11266 -11.89943 -11.80414 -11.77785 -11.01435 -10.85701 -10.56626 -10.25916 -10.15748 -10.09535 -9.66153 -9.14672 -8.97855 -8.61723 -8.54194 -8.42613 -6.41281 -4.15798 0.28164 0.71572 2.49850 2.85964 3.36481 3.39548 3.40657 3.56920 3.59912 4.09379 4.30509 4.40228 4.46095 4.67376 4.71616 5.00774 5.09914 5.19771 5.25547 5.32464 5.55741 5.65558 5.69079 5.73062 5.87379 5.95032 5.99828 6.05427 6.23042 6.35561 6.44665 6.49630 6.73982 6.88935 7.10959 7.16913 8.09134 8.19264 8.35755 8.79520 9.58373 10.97619 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.004247 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.290678 B = 6590.721199 C = 7360.985970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.118 4.118 4 C -0.032 4.032 5 C -0.133 4.133 6 C 0.498 3.502 7 O -0.504 6.504 8 O -0.321 6.321 9 C 0.112 3.888 10 C 0.013 3.987 11 C -0.564 4.564 12 H 0.057 0.943 13 C 0.025 3.975 14 N -0.905 5.905 15 Si 1.068 2.932 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.190 4.190 20 C -0.168 4.168 21 C 0.133 3.867 22 F -0.105 7.105 23 C 0.046 3.954 24 F -0.125 7.125 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.273 0.727 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -3.451 5.236 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.051 4.051 5 C -0.136 4.136 6 C 0.342 3.658 7 O -0.394 6.394 8 O -0.236 6.236 9 C 0.039 3.961 10 C 0.013 3.987 11 C -0.602 4.602 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.540 5.540 15 Si 0.896 3.104 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.227 4.227 20 C -0.205 4.205 21 C 0.112 3.888 22 F -0.083 7.083 23 C 0.026 3.974 24 F -0.103 7.103 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.849 -3.115 3.739 16.579 hybrid contribution 0.018 -1.414 1.492 2.056 sum -15.831 -4.530 5.230 17.277 Atomic orbital electron populations 1.20842 0.89014 1.04049 1.03587 1.20104 0.97659 0.90988 0.97625 1.21034 0.93727 0.97548 1.01338 1.21658 0.93970 0.97970 0.91461 1.19201 0.91636 0.92693 1.10023 1.20688 0.87841 0.83149 0.74156 1.90862 1.69838 1.33253 1.45443 1.86576 1.24366 1.31622 1.81032 1.22973 0.73642 0.98690 1.00795 1.19061 0.93879 0.92412 0.93362 1.21181 1.19969 1.15383 1.03631 0.92515 1.25837 0.94779 1.01015 0.96399 1.70762 1.29071 1.15953 1.38184 0.83557 0.75934 0.74845 0.76081 1.20796 1.21372 1.21350 1.22923 1.05316 1.00813 0.93667 1.22800 0.91973 1.01321 1.04449 1.17629 0.88142 0.81875 1.01183 1.91624 1.79791 1.44060 1.92779 1.17203 0.87472 0.82622 1.10141 1.91516 1.79190 1.45339 1.94293 0.89851 0.90667 0.90038 0.83274 0.81920 0.91284 0.93662 0.91570 0.89683 0.91289 0.91197 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.82 36.00 0.35 -0.43 16 2 C -0.06 -0.62 5.89 -104.49 -0.62 -1.23 16 3 C -0.12 -1.13 9.67 -39.65 -0.38 -1.51 16 4 C -0.03 -0.41 9.61 -39.17 -0.38 -0.79 16 5 C -0.13 -2.13 5.88 -104.94 -0.62 -2.75 16 6 C 0.50 9.98 7.88 34.54 0.27 10.25 16 7 O -0.50 -11.31 15.05 -19.26 -0.29 -11.60 16 8 O -0.32 -6.93 9.30 -40.56 -0.38 -7.30 16 9 C 0.11 2.60 5.37 37.16 0.20 2.80 16 10 C 0.01 0.32 1.22 -155.66 -0.19 0.13 16 11 C -0.56 -14.96 8.65 -34.44 -0.30 -15.26 16 12 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.03 0.68 5.39 -17.82 -0.10 0.59 16 14 N -0.91 -26.05 13.57 55.43 0.75 -25.29 16 15 Si 1.07 24.02 29.91 -169.99 -5.08 18.94 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.19 -4.00 9.94 -26.69 -0.27 -4.26 16 20 C -0.17 -3.73 8.66 -26.69 -0.23 -3.96 16 21 C 0.13 2.05 7.29 -38.88 -0.28 1.77 16 22 F -0.10 -1.85 15.48 2.25 0.03 -1.81 16 23 C 0.05 0.58 7.24 -39.42 -0.29 0.30 16 24 F -0.12 -1.60 16.37 2.25 0.04 -1.56 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.50 7.62 -51.93 -0.40 0.10 16 27 H 0.08 0.38 8.08 -51.92 -0.42 -0.04 16 28 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 29 H 0.16 2.06 7.62 -52.48 -0.40 1.66 16 30 H 0.07 1.73 7.88 -51.93 -0.41 1.32 16 31 H 0.05 0.99 7.94 -51.93 -0.41 0.57 16 32 H 0.27 7.79 6.18 -40.82 -0.25 7.53 16 33 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -31.03 325.42 -6.87 -37.91 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.03 Total: 0.18 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.82 Total: -14.36 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.75 Total: -25.29 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.67 Total: -18.91 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.08 Total: 18.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.03 -6.87 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869680624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.510 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds