Wall clock time and date at job start Tue Mar 31 2020 07:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38467 * 119.83711 * 2 1 4 4 C 1.37821 * 120.24430 * 180.02562 * 3 2 1 5 5 C 1.39739 * 119.92348 * 0.02562 * 4 3 2 6 6 C 1.47568 * 120.16097 * 180.02562 * 5 4 3 7 7 O 1.21497 * 120.00024 * 185.19976 * 6 5 4 8 8 O 1.34726 * 120.00235 * 5.20580 * 6 5 4 9 9 C 1.45205 * 117.00333 * 185.08769 * 8 6 5 10 10 C 1.52995 * 109.47264 * 184.90217 * 9 8 6 11 11 C 1.50706 * 115.54617 * 301.66303 * 10 9 8 12 12 H 1.07994 * 119.99727 * 95.22999 * 11 10 9 13 13 C 1.37878 * 120.00013 * 275.21950 * 11 10 9 14 14 N 1.31519 * 119.99595 * 5.68959 * 13 11 10 15 15 Si 1.86796 * 120.00152 * 185.68214 * 13 11 10 16 16 H 1.48498 * 109.47133 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47177 * 300.00767 * 15 13 11 18 18 H 1.48497 * 109.46829 * 60.00536 * 15 13 11 19 19 C 1.53000 * 117.49981 * 87.33472 * 10 9 8 20 20 C 1.53002 * 117.49900 * 155.99822 * 10 9 8 21 21 C 1.39823 * 119.67669 * 0.27124 * 5 4 3 22 22 F 1.35103 * 120.12359 * 179.70356 * 21 5 4 23 23 C 1.38379 * 119.83622 * 180.02562 * 2 1 3 24 24 F 1.35099 * 119.96220 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47515 * 89.99535 * 1 2 3 26 26 H 1.09002 * 109.47461 * 210.00385 * 1 2 3 27 27 H 1.09010 * 109.47022 * 329.99676 * 1 2 3 28 28 H 1.08001 * 119.87346 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.03423 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47242 * 64.89203 * 9 8 6 31 31 H 1.09006 * 109.46386 * 304.89798 * 9 8 6 32 32 H 0.96992 * 120.00325 * 355.11006 * 14 13 11 33 33 H 1.09002 * 117.49231 * 215.00077 * 19 10 9 34 34 H 1.08996 * 117.49921 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.50044 * 359.96846 * 20 10 9 36 36 H 1.08994 * 117.49942 * 144.97638 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2011 0.0000 4 6 3.5741 1.2109 -0.0005 5 6 4.2797 0.0048 -0.0016 6 6 5.7554 0.0092 -0.0016 7 8 6.3660 -1.0368 -0.0979 8 8 6.4256 1.1730 0.1053 9 6 7.8715 1.1147 -0.0157 10 6 8.4620 2.5003 0.2526 11 6 7.9725 3.6017 -0.6522 12 1 7.1533 4.2325 -0.3404 13 6 8.5707 3.8041 -1.8778 14 7 9.4918 2.9686 -2.3059 15 14 8.0728 5.2647 -2.9304 16 1 8.8573 5.2566 -4.1912 17 1 6.6250 5.1753 -3.2481 18 1 8.3400 6.5232 -2.1887 19 6 8.7751 2.8658 1.7049 20 6 9.9150 2.5692 0.7271 21 6 3.5808 -1.2062 -0.0079 22 9 4.2539 -2.3776 -0.0150 23 6 2.1954 -1.2004 -0.0005 24 9 1.5158 -2.3680 -0.0016 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6512 2.1337 0.0004 29 1 4.1080 2.1497 -0.0009 30 1 8.1392 0.7942 -1.0225 31 1 8.2683 0.4040 0.7094 32 1 9.8012 2.2515 -1.7307 33 1 8.6270 3.9029 2.0060 34 1 8.5607 2.1189 2.4693 35 1 10.4499 1.6274 0.8487 36 1 10.5168 3.4110 0.3848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869680624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:38 Heat of formation + Delta-G solvation = -148.171427 kcal Electronic energy + Delta-G solvation = -23430.334160 eV Core-core repulsion = 19515.657681 eV Total energy + Delta-G solvation = -3914.676480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.71388 -49.78859 -41.67266 -39.98584 -38.83953 -37.18260 -34.13891 -33.96931 -31.60959 -29.63439 -28.20437 -26.90211 -24.40266 -23.95362 -23.17358 -22.24990 -21.52244 -19.60329 -18.97650 -18.57339 -18.27925 -17.83346 -17.71818 -17.24163 -16.96299 -16.21409 -15.90336 -15.65993 -15.59393 -15.39297 -14.99965 -14.65173 -14.36299 -14.22011 -14.10213 -13.91986 -13.36504 -12.94015 -12.82842 -12.80441 -12.73131 -12.61857 -12.29234 -11.93644 -11.88635 -11.85349 -11.44884 -10.51834 -10.47490 -10.38831 -10.11315 -9.99641 -8.54004 -6.28724 -0.81395 -0.27617 1.17477 1.39510 1.58085 1.65129 1.83926 2.22722 2.49339 2.61240 3.05380 3.15466 3.21758 3.29532 3.50768 3.59221 3.81358 3.92836 4.14411 4.17161 4.28810 4.32138 4.42223 4.58782 4.75204 4.77607 4.77843 4.81219 4.93394 4.95203 5.10457 5.13849 5.16679 5.38324 5.40186 5.53839 6.13642 6.23946 6.51126 6.68521 7.53163 8.85832 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.004247 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.290678 B = 6590.721199 C = 7360.985970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.039 4.039 3 C -0.095 4.095 4 C -0.030 4.030 5 C -0.160 4.160 6 C 0.495 3.505 7 O -0.540 6.540 8 O -0.326 6.326 9 C 0.123 3.877 10 C -0.020 4.020 11 C -0.569 4.569 12 H 0.053 0.947 13 C -0.022 4.022 14 N -0.935 5.935 15 Si 1.110 2.890 16 H -0.291 1.291 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.163 4.163 20 C -0.167 4.167 21 C 0.107 3.893 22 F -0.128 7.128 23 C 0.041 3.959 24 F -0.127 7.127 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.198 0.802 29 H 0.163 0.837 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.609 -1.607 5.945 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.041 4.041 3 C -0.112 4.112 4 C -0.048 4.048 5 C -0.163 4.163 6 C 0.341 3.659 7 O -0.432 6.432 8 O -0.241 6.241 9 C 0.049 3.951 10 C -0.020 4.020 11 C -0.606 4.606 12 H 0.072 0.928 13 C -0.221 4.221 14 N -0.572 5.572 15 Si 0.933 3.067 16 H -0.217 1.217 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.200 4.200 20 C -0.204 4.204 21 C 0.086 3.914 22 F -0.107 7.107 23 C 0.021 3.979 24 F -0.105 7.105 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.215 0.785 29 H 0.181 0.819 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.134 -1.270 4.477 19.691 hybrid contribution 0.892 -2.006 1.319 2.561 sum -18.241 -3.276 5.796 19.418 Atomic orbital electron populations 1.21035 0.85841 1.05666 1.05030 1.20613 0.99651 0.89640 0.94149 1.21511 0.92156 0.99250 0.98319 1.21787 0.95500 0.96446 0.91055 1.19055 0.89023 0.94430 1.13745 1.21453 0.89562 0.82100 0.72783 1.90828 1.70950 1.34121 1.47316 1.86569 1.23466 1.32648 1.81403 1.22653 0.74897 0.98450 0.99120 1.19144 0.95314 0.92214 0.95376 1.21449 1.19520 1.15612 1.04041 0.92833 1.27145 0.94325 1.02619 0.98061 1.70868 1.30885 1.16885 1.38526 0.83019 0.76477 0.72766 0.74479 1.21699 1.19431 1.19386 1.22952 1.02859 1.01787 0.92448 1.22743 0.91444 1.01455 1.04784 1.17954 0.89362 0.80984 1.03089 1.91552 1.80554 1.45294 1.93265 1.17386 0.86376 0.83701 1.10411 1.91512 1.78888 1.45779 1.94340 0.88186 0.90608 0.86971 0.78535 0.81934 0.94496 0.92838 0.92716 0.89065 0.88979 0.89758 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.82 71.24 0.70 -0.26 16 2 C -0.04 -0.63 5.89 -19.78 -0.12 -0.74 16 3 C -0.09 -1.39 9.67 22.23 0.21 -1.18 16 4 C -0.03 -0.70 9.61 22.53 0.22 -0.48 16 5 C -0.16 -5.19 5.88 -20.07 -0.12 -5.31 16 6 C 0.49 20.67 7.88 70.28 0.55 21.22 16 7 O -0.54 -25.68 15.05 19.85 0.30 -25.38 16 8 O -0.33 -14.44 9.30 -56.36 -0.52 -14.96 16 9 C 0.12 5.86 5.37 71.98 0.39 6.25 16 10 C -0.02 -0.97 1.22 -52.93 -0.06 -1.03 16 11 C -0.57 -30.28 8.65 25.60 0.22 -30.06 16 12 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 13 C -0.02 -1.21 5.39 84.65 0.46 -0.76 16 14 N -0.94 -55.19 13.57 21.45 0.29 -54.90 16 15 Si 1.11 47.99 29.91 68.60 2.05 50.04 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 C -0.16 -6.67 9.94 30.62 0.30 -6.37 16 20 C -0.17 -7.43 8.66 30.62 0.27 -7.16 16 21 C 0.11 3.36 7.29 22.73 0.17 3.52 16 22 F -0.13 -4.80 15.48 44.97 0.70 -4.11 16 23 C 0.04 0.99 7.24 22.38 0.16 1.15 16 24 F -0.13 -3.09 16.37 44.97 0.74 -2.35 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.68 7.62 -2.39 -0.02 0.66 16 27 H 0.11 0.31 8.08 -2.38 -0.02 0.29 16 28 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.16 3.83 7.62 -2.91 -0.02 3.81 16 30 H 0.04 1.96 7.88 -2.39 -0.02 1.94 16 31 H 0.05 2.41 7.94 -2.38 -0.02 2.39 16 32 H 0.26 15.56 6.18 -92.71 -0.57 14.99 16 33 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.07 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -70.89 325.42 8.20 -62.68 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.31 Total: 10.17 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 3.35 Total: -21.20 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.29 Total: -54.90 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.23 Total: -40.34 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.43 Total: -6.46 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.05 Total: 50.04 kcal Total: -70.89 8.20 -62.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869680624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.487 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds