Wall clock time and date at job start Tue Mar 31 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 35.00177 * 12 11 10 14 14 C 1.52998 * 109.46733 * 155.00124 * 12 11 10 15 15 C 1.50700 * 109.47217 * 294.99711 * 14 12 11 16 16 C 1.38245 * 119.98702 * 269.73292 * 15 14 12 17 17 C 1.38213 * 120.01188 * 179.72843 * 16 15 14 18 18 C 1.38353 * 119.98731 * 0.54052 * 17 16 15 19 19 Cl 1.73607 * 120.01447 * 179.70887 * 18 17 16 20 20 C 1.38352 * 119.97113 * 359.72838 * 18 17 16 21 21 C 1.38210 * 119.99053 * 0.02562 * 20 18 17 22 22 C 1.50698 * 109.47105 * 274.99794 * 12 11 10 23 23 N 1.34770 * 119.99870 * 180.02562 * 22 12 11 24 24 O 1.21281 * 119.99979 * 359.97438 * 22 12 11 25 25 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 31 31 H 1.08997 * 109.47741 * 54.99549 * 14 12 11 32 32 H 1.09007 * 109.47097 * 175.00377 * 14 12 11 33 33 H 1.07995 * 119.99275 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.00951 * 180.26978 * 17 16 15 35 35 H 1.08001 * 120.00499 * 180.02562 * 20 18 17 36 36 H 1.07992 * 119.99650 * 179.97438 * 21 20 18 37 37 H 0.97001 * 120.00276 * 359.97438 * 23 22 12 38 38 H 0.97001 * 119.99894 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4907 -2.6365 0.0022 12 6 6.0171 -4.0079 0.0027 13 1 5.3619 -4.6488 -0.5872 14 6 7.4208 -4.0155 -0.6058 15 6 7.3412 -3.6196 -2.0576 16 6 7.1715 -4.5880 -3.0296 17 6 7.0927 -4.2250 -4.3608 18 6 7.1949 -2.8932 -4.7217 19 17 7.1037 -2.4372 -6.3943 20 6 7.3704 -1.9251 -3.7490 21 6 7.4439 -2.2888 -2.4176 22 6 6.0804 -4.5211 1.4182 23 7 6.5355 -5.7656 1.6640 24 8 5.7227 -3.8139 2.3362 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6586 -3.1502 -0.8892 29 1 3.6580 -3.1505 0.8908 30 1 5.8529 -2.1100 -0.7787 31 1 8.0529 -3.3071 -0.0703 32 1 7.8466 -5.0157 -0.5248 33 1 7.0964 -5.6279 -2.7482 34 1 6.9557 -4.9811 -5.1197 35 1 7.4498 -0.8853 -4.0300 36 1 7.5812 -1.5332 -1.6583 37 1 6.8219 -6.3311 0.9298 38 1 6.5766 -6.0958 2.5752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354564310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:56 Heat of formation + Delta-G solvation = -56.833214 kcal Electronic energy + Delta-G solvation = -21208.978742 eV Core-core repulsion = 17882.352416 eV Total energy + Delta-G solvation = -3326.626326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07696 -40.05032 -37.73564 -37.15979 -35.43821 -34.60980 -33.61480 -32.04357 -31.57770 -29.19453 -26.01146 -25.21127 -23.80153 -22.48909 -22.05981 -20.97739 -19.02539 -18.28909 -18.06636 -17.91919 -16.74816 -16.52658 -16.29265 -16.02482 -15.76546 -15.15211 -15.13533 -14.78574 -14.58993 -14.41548 -14.30738 -14.24768 -13.44517 -13.30934 -13.05925 -12.71658 -12.43709 -12.33977 -12.24361 -11.90756 -11.79152 -11.74979 -11.64466 -11.45748 -10.90808 -10.77865 -10.53626 -10.00245 -9.54770 -9.33159 -8.31249 -6.35484 0.11358 0.33550 1.17285 1.33608 1.37423 1.50795 1.75551 2.35795 2.50888 2.69133 3.04236 3.26665 3.71071 3.83062 3.95641 3.98369 4.21340 4.25354 4.34049 4.38981 4.43677 4.51431 4.68356 4.73851 4.92693 4.99132 5.02882 5.23473 5.24821 5.28368 5.45042 5.54668 5.62712 5.84779 5.97061 6.05672 6.23122 6.45570 6.64447 6.72121 7.29118 7.51989 8.85575 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.005222 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.535156 B = 5360.210911 C = 7704.600872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.533 4.533 8 H 0.031 0.969 9 C -0.002 4.002 10 C 0.094 3.906 11 N -0.680 5.680 12 C 0.073 3.927 13 H 0.082 0.918 14 C -0.068 4.068 15 C -0.088 4.088 16 C -0.097 4.097 17 C -0.115 4.115 18 C -0.050 4.050 19 Cl -0.079 7.079 20 C -0.119 4.119 21 C -0.115 4.115 22 C 0.514 3.486 23 N -0.835 5.835 24 O -0.574 6.574 25 H 0.267 0.733 26 H 0.016 0.984 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.043 0.957 30 H 0.350 0.650 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.418 0.582 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.076 -13.534 -8.915 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.039 4.039 10 C -0.035 4.035 11 N -0.315 5.315 12 C -0.041 4.041 13 H 0.100 0.900 14 C -0.105 4.105 15 C -0.088 4.088 16 C -0.115 4.115 17 C -0.133 4.133 18 C -0.077 4.077 19 Cl -0.051 7.051 20 C -0.137 4.137 21 C -0.134 4.134 22 C 0.298 3.702 23 N -0.402 5.402 24 O -0.452 6.452 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.172 0.828 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.249 0.751 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 22.708 -12.727 -7.944 27.216 hybrid contribution -0.591 0.363 -0.962 1.186 sum 22.116 -12.365 -8.905 26.857 Atomic orbital electron populations 1.70057 1.08218 1.28223 1.52527 1.25969 0.95630 1.03447 0.93909 0.85650 0.79428 0.78168 0.79400 1.18569 1.20779 1.17524 1.21367 0.91802 0.93223 1.50728 0.95091 1.19388 0.93720 0.94382 0.96445 1.21585 0.86145 0.97548 0.98218 1.60111 1.07734 1.13042 1.50623 1.21518 0.98442 0.91537 0.92607 0.89993 1.20745 0.93567 1.05736 0.90476 1.20031 0.99517 0.93431 0.95860 1.21361 0.98115 1.01035 0.90989 1.21330 0.99951 0.94119 0.97919 1.21172 1.05837 0.95438 0.85206 1.98370 1.96790 1.92982 1.16910 1.21234 1.00252 0.99849 0.92412 1.21314 0.99573 0.96809 0.95659 1.20911 0.75878 0.82065 0.91341 1.43644 1.67749 1.15012 1.13749 1.90766 1.48534 1.58296 1.47578 0.92398 0.96589 0.96136 0.95996 0.93829 0.82777 0.89379 0.85622 0.81699 0.83297 0.84487 0.84282 0.75050 0.76196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.54 13.96 21.45 0.30 -61.24 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 46.46 27.47 68.60 1.88 48.34 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 7 C -0.53 -32.49 9.66 25.60 0.25 -32.24 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 9 C 0.00 -0.08 4.30 29.85 0.13 0.05 16 10 C 0.09 4.03 5.32 86.30 0.46 4.49 16 11 N -0.68 -22.67 5.84 -495.45 -2.89 -25.56 16 12 C 0.07 1.70 2.44 44.17 0.11 1.81 16 13 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 14 C -0.07 -0.98 4.92 29.85 0.15 -0.83 16 15 C -0.09 -1.42 4.84 -19.86 -0.10 -1.52 16 16 C -0.10 -1.31 9.70 22.27 0.22 -1.09 16 17 C -0.11 -1.84 9.83 22.29 0.22 -1.62 16 18 C -0.05 -0.99 6.32 22.32 0.14 -0.85 16 19 Cl -0.08 -1.58 28.96 -2.72 -0.08 -1.66 16 20 C -0.12 -2.40 9.83 22.29 0.22 -2.18 16 21 C -0.12 -2.22 8.04 22.26 0.18 -2.04 16 22 C 0.51 13.50 7.30 87.66 0.64 14.14 16 23 N -0.84 -11.64 8.73 -173.54 -1.52 -13.15 16 24 O -0.57 -22.65 16.76 -3.03 -0.05 -22.70 16 25 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 26 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 27 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 28 H 0.02 0.92 8.06 -2.39 -0.02 0.90 16 29 H 0.04 2.07 7.62 -2.39 -0.02 2.06 16 30 H 0.35 10.51 5.50 -89.69 -0.49 10.01 16 31 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.13 0.77 7.37 -2.38 -0.02 0.76 16 33 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.14 2.57 7.53 -2.91 -0.02 2.55 16 37 H 0.42 2.19 8.19 -92.71 -0.76 1.44 16 38 H 0.41 5.16 8.93 -92.71 -0.83 4.33 16 Total: -1.00 -82.13 334.77 -0.31 -82.44 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -1.03 Total: 14.52 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.07 Total: -20.98 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.11 Total: -99.96 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.88 Total: 48.34 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -82.13 -0.31 -82.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354564310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.608 kcal (2) G-P(sol) polarization free energy of solvation -82.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds