Wall clock time and date at job start Tue Mar 31 2020 07:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47473 * 240.00317 * 3 2 1 5 5 H 1.48506 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47022 * 119.99671 * 3 2 1 7 7 C 1.38814 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99607 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.38234 * 120.00769 * 99.99994 * 17 16 14 19 19 C 1.38216 * 120.01261 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.02947 * 0.04121 * 19 18 17 21 21 C 1.38193 * 120.01011 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.00619 * 279.72404 * 17 16 14 23 23 Cl 1.73602 * 120.01085 * 359.97438 * 22 17 16 24 24 H 0.97006 * 119.99942 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00490 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.48027 * 59.99428 * 10 9 7 27 27 H 1.09002 * 109.46704 * 299.99128 * 10 9 7 28 28 H 1.09001 * 109.46812 * 59.99364 * 11 10 9 29 29 H 1.09002 * 109.46935 * 299.99706 * 11 10 9 30 30 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 31 31 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 11 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.08005 * 119.99257 * 359.97438 * 18 17 16 36 36 H 1.08009 * 119.98600 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.99388 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8286 -6.1448 -0.0005 13 7 0.8765 -7.2582 0.0007 14 6 1.3258 -8.5289 0.0009 15 8 2.5181 -8.7507 -0.0004 16 6 0.3464 -9.6744 0.0016 17 6 1.0999 -10.9795 0.0011 18 6 1.2663 -11.6821 1.1798 19 6 1.9569 -12.8794 1.1794 20 6 2.4824 -13.3747 0.0003 21 6 2.3169 -12.6730 -1.1787 22 6 1.6202 -11.4775 -1.1800 23 17 1.4048 -10.5995 -2.6620 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3881 0.0002 26 1 2.6847 -3.7147 0.8893 27 1 2.6845 -3.7145 -0.8906 28 1 0.4366 -4.7621 -0.8896 29 1 0.4374 -4.7618 0.8904 30 1 2.4559 -6.2026 0.8890 31 1 2.4546 -6.2025 -0.8910 32 1 -0.0771 -7.0810 0.0021 33 1 -0.2799 -9.6163 0.8918 34 1 -0.2806 -9.6169 -0.8882 35 1 0.8567 -11.2955 2.1013 36 1 2.0864 -13.4283 2.1006 37 1 3.0222 -14.3100 0.0007 38 1 2.7270 -13.0601 -2.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175400611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:45 Heat of formation + Delta-G solvation = -19.809956 kcal Electronic energy + Delta-G solvation = -20114.064200 eV Core-core repulsion = 16789.043323 eV Total energy + Delta-G solvation = -3325.020877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26805 -39.01583 -36.65279 -36.02760 -34.31992 -33.27928 -31.93810 -31.03416 -29.73507 -27.89347 -25.08209 -23.04130 -22.83337 -21.92425 -21.20175 -20.20554 -17.50854 -17.22123 -16.79412 -16.29045 -16.13797 -15.45675 -15.39524 -14.57007 -14.38054 -14.14555 -14.03462 -13.59408 -13.26958 -13.19988 -12.95237 -12.74893 -12.14832 -11.95669 -11.75214 -11.63055 -11.59157 -11.00809 -10.95118 -10.90427 -10.78551 -10.60416 -10.13466 -9.93817 -9.70004 -9.20734 -9.03087 -8.94160 -8.87370 -6.93543 -5.77074 -3.05997 0.84265 0.93754 1.91612 2.61005 3.06404 3.44717 3.44914 3.48907 3.50304 4.22902 4.40330 4.59311 4.62831 4.76674 4.85064 5.00009 5.06559 5.16160 5.19156 5.32559 5.38768 5.56712 5.57637 5.63994 5.88476 6.00322 6.01042 6.07570 6.08608 6.19664 6.32457 6.46316 6.47224 6.79363 6.83621 7.47304 7.69846 8.19706 8.41987 9.52945 10.10078 10.44861 11.45883 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.037724 B = 0.002229 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.059252 B =12560.553198 C =12790.755021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.123 3.877 13 N -0.728 5.728 14 C 0.515 3.485 15 O -0.531 6.531 16 C -0.110 4.110 17 C -0.055 4.055 18 C -0.098 4.098 19 C -0.116 4.116 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.018 4.018 23 Cl -0.066 7.066 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 -29.600 0.171 29.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.300 3.700 15 O -0.407 6.407 16 C -0.149 4.149 17 C -0.057 4.057 18 C -0.116 4.116 19 C -0.134 4.134 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.044 4.044 23 Cl -0.037 7.037 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.098 -29.531 0.031 29.531 hybrid contribution -0.339 1.172 -0.145 1.229 sum -0.437 -28.359 -0.115 28.362 Atomic orbital electron populations 1.69652 1.05129 1.25795 1.57791 1.24758 0.95573 0.97771 1.03002 0.86232 0.78497 0.83360 0.77898 1.21221 1.21669 1.21227 1.19204 0.91076 0.84133 1.42733 0.91150 1.42333 1.05858 0.99990 1.89627 1.20521 0.93281 0.85196 0.98191 1.21943 0.99565 0.93347 1.02697 1.21345 0.91724 0.84533 1.02415 1.46047 1.10722 1.05682 1.75533 1.20297 0.89577 0.83662 0.76471 1.90733 1.16613 1.84629 1.48694 1.20742 0.97915 0.90457 1.05832 1.19160 0.98934 0.95418 0.92158 1.21001 0.98850 0.94895 0.96835 1.21206 0.97659 0.96093 0.98427 1.21110 0.99642 0.99997 0.92041 1.21033 0.98763 0.93734 0.99448 1.20784 1.01625 0.94490 0.87527 1.98379 1.95793 1.75967 1.33539 0.93459 0.78302 0.96082 0.96066 0.91301 0.91300 0.91421 0.91402 0.76545 0.87508 0.87453 0.85122 0.85349 0.85170 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.83 5.60 -59.91 -0.34 -19.16 16 10 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 11 C -0.14 -2.11 5.44 -26.73 -0.15 -2.25 16 12 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 13 N -0.73 -8.30 5.56 -60.30 -0.33 -8.63 16 14 C 0.51 6.36 7.62 -10.98 -0.08 6.28 16 15 O -0.53 -8.72 15.96 5.56 0.09 -8.64 16 16 C -0.11 -0.96 5.30 -29.03 -0.15 -1.12 16 17 C -0.06 -0.55 4.42 -104.59 -0.46 -1.02 16 18 C -0.10 -0.83 9.67 -39.59 -0.38 -1.21 16 19 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 20 C -0.11 -0.83 10.05 -39.59 -0.40 -1.22 16 21 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 22 C -0.02 -0.19 6.21 -39.50 -0.25 -0.43 16 23 Cl -0.07 -0.72 27.34 -51.86 -1.42 -2.14 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.38 10.20 7.67 -40.82 -0.31 9.88 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 33 H 0.11 0.64 8.01 -51.93 -0.42 0.22 16 34 H 0.11 0.82 7.34 -51.93 -0.38 0.44 16 35 H 0.13 0.84 8.04 -52.48 -0.42 0.42 16 36 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -34.40 343.07 -9.31 -43.71 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.23 Total: 6.16 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.95 Total: -6.35 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.05 Total: -55.51 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.42 Total: -2.14 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.40 -9.31 -43.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175400611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.896 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds