Wall clock time and date at job start Tue Mar 31 2020 07:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47473 * 240.00317 * 3 2 1 5 5 H 1.48506 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47022 * 119.99671 * 3 2 1 7 7 C 1.38814 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99607 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.38234 * 120.00769 * 99.99994 * 17 16 14 19 19 C 1.38216 * 120.01261 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.02947 * 0.04121 * 19 18 17 21 21 C 1.38193 * 120.01011 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.00619 * 279.72404 * 17 16 14 23 23 Cl 1.73602 * 120.01085 * 359.97438 * 22 17 16 24 24 H 0.97006 * 119.99942 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00490 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.48027 * 59.99428 * 10 9 7 27 27 H 1.09002 * 109.46704 * 299.99128 * 10 9 7 28 28 H 1.09001 * 109.46812 * 59.99364 * 11 10 9 29 29 H 1.09002 * 109.46935 * 299.99706 * 11 10 9 30 30 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 31 31 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 11 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.08005 * 119.99257 * 359.97438 * 18 17 16 36 36 H 1.08009 * 119.98600 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.99388 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8286 -6.1448 -0.0005 13 7 0.8765 -7.2582 0.0007 14 6 1.3258 -8.5289 0.0009 15 8 2.5181 -8.7507 -0.0004 16 6 0.3464 -9.6744 0.0016 17 6 1.0999 -10.9795 0.0011 18 6 1.2663 -11.6821 1.1798 19 6 1.9569 -12.8794 1.1794 20 6 2.4824 -13.3747 0.0003 21 6 2.3169 -12.6730 -1.1787 22 6 1.6202 -11.4775 -1.1800 23 17 1.4048 -10.5995 -2.6620 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3881 0.0002 26 1 2.6847 -3.7147 0.8893 27 1 2.6845 -3.7145 -0.8906 28 1 0.4366 -4.7621 -0.8896 29 1 0.4374 -4.7618 0.8904 30 1 2.4559 -6.2026 0.8890 31 1 2.4546 -6.2025 -0.8910 32 1 -0.0771 -7.0810 0.0021 33 1 -0.2799 -9.6163 0.8918 34 1 -0.2806 -9.6169 -0.8882 35 1 0.8567 -11.2955 2.1013 36 1 2.0864 -13.4283 2.1006 37 1 3.0222 -14.3100 0.0007 38 1 2.7270 -13.0601 -2.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175400611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:45 Heat of formation + Delta-G solvation = -42.323692 kcal Electronic energy + Delta-G solvation = -20115.040469 eV Core-core repulsion = 16789.043323 eV Total energy + Delta-G solvation = -3325.997146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09527 -39.81521 -37.50318 -37.39703 -35.87761 -34.07475 -33.61139 -31.64990 -31.33947 -28.79676 -26.71510 -24.45867 -23.65365 -22.80645 -22.56425 -21.21664 -19.20344 -18.12731 -17.88834 -17.15358 -17.10414 -16.54400 -16.50433 -16.04659 -15.48282 -15.29972 -15.18725 -14.76312 -14.69381 -14.17018 -13.97246 -13.90861 -13.30025 -13.04848 -12.78257 -12.65578 -12.54676 -12.45428 -12.43765 -12.20353 -12.10693 -12.03707 -11.80549 -11.71150 -10.98058 -10.94627 -10.08381 -9.84302 -9.60622 -9.03073 -7.97278 -5.26655 0.20207 0.31883 1.19351 1.47136 1.50353 1.56500 1.66760 2.18621 2.55740 2.76226 3.36224 3.57143 3.76886 3.81056 3.97532 4.07556 4.10793 4.28861 4.30428 4.43075 4.46213 4.49730 4.60210 4.72598 4.73073 4.79305 4.87917 5.00052 5.27991 5.29185 5.30929 5.41012 5.44867 5.47663 5.49490 5.90057 6.25344 6.57706 7.27602 7.31731 8.06254 8.30489 9.25952 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.037724 B = 0.002229 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.059252 B =12560.553198 C =12790.755021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.152 3.848 11 C -0.118 4.118 12 C 0.135 3.865 13 N -0.719 5.719 14 C 0.514 3.486 15 O -0.575 6.575 16 C -0.103 4.103 17 C -0.076 4.076 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.040 4.040 23 Cl -0.081 7.081 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.416 0.584 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -30.787 1.054 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.025 3.975 11 C -0.156 4.156 12 C 0.011 3.989 13 N -0.372 5.372 14 C 0.301 3.699 15 O -0.454 6.454 16 C -0.142 4.142 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.067 4.067 23 Cl -0.053 7.053 24 H 0.061 0.939 25 H 0.208 0.792 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.253 0.747 33 H 0.157 0.843 34 H 0.136 0.864 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.099 -30.748 0.913 30.762 hybrid contribution -0.294 1.434 -0.394 1.516 sum -0.393 -29.314 0.519 29.321 Atomic orbital electron populations 1.69801 1.06537 1.26298 1.59207 1.25604 0.96514 1.01195 1.03463 0.85182 0.77226 0.78955 0.78219 1.20420 1.21883 1.20332 1.19607 0.91536 0.85446 1.41727 0.90803 1.42536 1.05740 1.01142 1.89569 1.20677 0.94127 0.84849 0.97852 1.21696 0.98434 0.92146 1.03290 1.21032 0.91748 0.84559 1.01594 1.45914 1.11217 1.04997 1.75044 1.20913 0.89576 0.84313 0.75107 1.90712 1.18717 1.85249 1.50737 1.20773 0.97166 0.88392 1.07873 1.19398 0.99680 0.96095 0.92522 1.21346 0.98829 0.95227 0.97042 1.21606 0.96628 0.95856 0.99486 1.21481 0.99191 1.00695 0.91504 1.21294 0.98858 0.93648 1.00628 1.21050 1.03017 0.95282 0.87351 1.98363 1.95954 1.76425 1.34522 0.93854 0.79192 0.96036 0.96270 0.90856 0.90513 0.92067 0.92566 0.74717 0.84286 0.86405 0.83191 0.82685 0.82582 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.21 13.06 21.65 0.28 -58.92 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.33 5.60 -343.44 -1.92 -40.25 16 10 C 0.15 6.07 6.26 86.38 0.54 6.61 16 11 C -0.12 -3.48 5.44 30.60 0.17 -3.32 16 12 C 0.14 3.62 5.67 86.38 0.49 4.11 16 13 N -0.72 -15.36 5.56 -463.06 -2.57 -17.93 16 14 C 0.51 12.13 7.62 87.66 0.67 12.80 16 15 O -0.57 -18.79 15.96 -3.03 -0.05 -18.84 16 16 C -0.10 -1.63 5.30 29.10 0.15 -1.47 16 17 C -0.08 -1.42 4.42 -19.84 -0.09 -1.50 16 18 C -0.11 -1.59 9.67 22.26 0.22 -1.37 16 19 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 20 C -0.11 -1.46 10.05 22.26 0.22 -1.23 16 21 C -0.13 -2.16 9.83 22.29 0.22 -1.94 16 22 C -0.04 -0.84 6.21 22.32 0.14 -0.70 16 23 Cl -0.08 -1.79 27.34 -2.72 -0.07 -1.86 16 24 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 25 H 0.38 20.10 7.67 -92.71 -0.71 19.39 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.42 6.31 8.47 -92.71 -0.79 5.53 16 33 H 0.14 1.25 8.01 -2.39 -0.02 1.23 16 34 H 0.12 1.61 7.34 -2.39 -0.02 1.60 16 35 H 0.15 1.53 8.04 -2.91 -0.02 1.50 16 36 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -74.02 343.07 1.53 -72.48 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.42 Total: 23.56 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.26 Total: -6.63 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -4.21 Total: -117.11 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.07 Total: -1.86 kcal Total: -74.02 1.53 -72.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175400611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.159 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds