Wall clock time and date at job start Tue Mar 31 2020 08:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00396 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99719 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46785 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00121 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47118 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47233 * 120.00345 * 14 12 10 17 17 H 1.48506 * 109.46946 * 240.00396 * 14 12 10 18 18 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 19 19 C 1.38243 * 119.98270 * 79.72894 * 18 2 1 20 20 C 1.38214 * 120.00830 * 179.72846 * 19 18 2 21 21 C 1.38354 * 119.98874 * 0.54209 * 20 19 18 22 22 Cl 1.73594 * 120.01533 * 179.70691 * 21 20 19 23 23 C 1.38356 * 119.97143 * 359.73055 * 21 20 19 24 24 C 1.38220 * 119.98798 * 359.97438 * 23 21 20 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 31 31 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.47195 * 299.98994 * 9 8 6 33 33 H 1.08995 * 109.47470 * 59.99670 * 9 8 6 34 34 H 0.97000 * 119.99968 * 179.97438 * 13 12 10 35 35 H 1.07998 * 119.99392 * 0.02562 * 19 18 2 36 36 H 1.08001 * 120.00928 * 180.27225 * 20 19 18 37 37 H 1.07998 * 120.00559 * 179.97438 * 23 21 20 38 38 H 1.07991 * 119.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8677 -1.6986 -3.4703 8 7 2.7283 0.1206 -4.7325 9 6 3.2196 -0.6030 -5.9078 10 6 3.2839 0.3358 -7.0849 11 1 2.9880 1.3680 -6.9692 12 6 3.7206 -0.1230 -8.3096 13 7 4.0805 -1.3801 -8.4506 14 14 3.8010 1.0407 -9.7685 15 1 3.3445 2.3906 -9.3507 16 1 5.1995 1.1210 -10.2612 17 1 2.9221 0.5355 -10.8537 18 6 2.0324 -0.7104 1.2305 19 6 2.0613 -2.0921 1.2671 20 6 2.5272 -2.7441 2.3932 21 6 2.9540 -2.0140 3.4881 22 17 3.5321 -2.8323 4.9057 23 6 2.9195 -0.6313 3.4530 24 6 2.4591 0.0198 2.3240 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 2.5044 1.0619 -4.8011 32 1 4.2149 -0.9969 -5.7021 33 1 2.5431 -1.4263 -6.1367 34 1 4.3873 -1.7030 -9.3122 35 1 1.7244 -2.6619 0.4138 36 1 2.5540 -3.8234 2.4201 37 1 3.2521 -0.0608 4.3075 38 1 2.4325 1.0990 2.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027354380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:42 Heat of formation + Delta-G solvation = -28.036127 kcal Electronic energy + Delta-G solvation = -20272.362084 eV Core-core repulsion = 16946.984493 eV Total energy + Delta-G solvation = -3325.377591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88867 -38.83323 -37.04672 -36.11443 -34.16508 -32.37141 -31.81668 -31.25020 -29.20701 -27.71968 -25.65665 -23.74670 -22.98487 -22.22736 -20.74380 -19.72758 -17.74563 -17.01532 -16.13057 -15.97272 -15.50533 -15.22860 -15.10818 -14.58010 -14.28214 -13.96431 -13.92657 -13.66958 -13.60230 -13.06782 -12.77121 -12.59963 -12.29068 -12.03719 -11.94705 -11.62054 -11.49379 -11.39900 -11.21236 -10.97847 -10.96508 -10.91344 -10.33564 -9.39599 -9.22581 -9.09232 -8.79419 -8.75320 -8.43597 -7.88693 -6.18176 -4.25163 0.93823 1.11239 1.92573 3.22142 3.29121 3.32010 3.35809 3.39201 3.76801 4.27184 4.41863 4.55767 4.58524 4.67744 4.88824 4.95167 5.15518 5.17927 5.21543 5.30511 5.33938 5.45507 5.51503 5.55998 5.61490 5.74735 5.83674 6.00879 6.06851 6.31826 6.59559 6.85100 7.27011 7.31682 7.42900 7.50804 7.65724 7.95723 8.61565 8.77176 9.09661 9.41659 10.92045 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.002278 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.024773 B =12288.255786 C =12708.562567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.090 0.910 4 N -0.664 5.664 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.543 6.543 8 N -0.714 5.714 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.059 4.059 19 C -0.082 4.082 20 C -0.110 4.110 21 C -0.039 4.039 22 Cl -0.079 7.079 23 C -0.112 4.112 24 C -0.104 4.104 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.352 0.648 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.390 0.610 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 3.916 23.797 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 H 0.108 0.892 4 N -0.296 5.296 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.421 6.421 8 N -0.364 5.364 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.060 4.060 19 C -0.101 4.101 20 C -0.129 4.129 21 C -0.066 4.066 22 Cl -0.050 7.050 23 C -0.131 4.131 24 C -0.123 4.123 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.173 0.827 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.222 0.778 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.892 2.920 23.957 24.843 hybrid contribution -0.821 1.026 -1.004 1.654 sum -6.713 3.946 22.953 24.237 Atomic orbital electron populations 1.22519 0.95973 1.02817 1.02609 1.20491 0.92799 0.97480 0.88186 0.89194 1.60216 1.58011 1.09111 1.02296 1.21879 1.00835 0.96109 0.90418 1.20328 0.79450 0.87916 0.84303 1.90669 1.50674 1.16095 1.84697 1.46448 1.65478 1.13852 1.10572 1.19096 0.95025 0.92447 0.80474 1.21263 1.45998 0.96533 0.94332 0.91860 1.24965 0.94828 0.95346 0.98960 1.69987 1.42981 1.14332 1.24939 0.86359 0.77842 0.80656 0.82035 1.19653 1.20774 1.20810 1.19874 0.97633 0.93861 0.94587 1.20961 0.98014 0.94040 0.97063 1.21076 0.99221 1.00451 0.92133 1.20924 1.03369 0.92856 0.89453 1.98363 1.87552 1.79376 1.39727 1.20966 1.00752 0.92220 0.99160 1.20939 0.98905 1.00015 0.92443 0.91694 0.91942 0.91960 0.82745 0.92643 0.88483 0.77790 0.95515 0.95609 0.92486 0.84871 0.85026 0.85155 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.14 37.16 0.34 -1.07 16 2 C 0.12 1.13 2.79 -68.86 -0.19 0.94 16 3 H 0.09 0.76 7.66 -51.93 -0.40 0.36 16 4 N -0.66 -8.34 5.34 -109.21 -0.58 -8.92 16 5 C 0.04 0.52 5.97 -4.98 -0.03 0.49 16 6 C 0.50 9.51 7.87 -10.99 -0.09 9.42 16 7 O -0.54 -12.79 16.20 5.56 0.09 -12.70 16 8 N -0.71 -14.60 5.55 -61.47 -0.34 -14.95 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 10 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 11 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.88 -26.00 13.29 55.43 0.74 -25.27 16 14 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.06 -0.58 4.95 -104.62 -0.52 -1.10 16 19 C -0.08 -0.86 9.32 -39.59 -0.37 -1.23 16 20 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 21 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 22 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 23 C -0.11 -1.01 9.83 -39.54 -0.39 -1.40 16 24 C -0.10 -0.92 9.67 -39.59 -0.38 -1.30 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.35 4.56 7.52 -39.29 -0.30 4.27 16 29 H 0.06 0.60 7.44 -51.93 -0.39 0.21 16 30 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 31 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.13 1.36 7.25 -52.49 -0.38 0.98 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -32.14 342.35 -9.27 -41.41 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.10 Total: 5.96 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.71 Total: -4.13 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.19 Total: -49.13 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.14 -9.27 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027354380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.371 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds