Wall clock time and date at job start Tue Mar 31 2020 08:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00396 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99719 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46785 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00121 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47118 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47233 * 120.00345 * 14 12 10 17 17 H 1.48506 * 109.46946 * 240.00396 * 14 12 10 18 18 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 19 19 C 1.38243 * 119.98270 * 79.72894 * 18 2 1 20 20 C 1.38214 * 120.00830 * 179.72846 * 19 18 2 21 21 C 1.38354 * 119.98874 * 0.54209 * 20 19 18 22 22 Cl 1.73594 * 120.01533 * 179.70691 * 21 20 19 23 23 C 1.38356 * 119.97143 * 359.73055 * 21 20 19 24 24 C 1.38220 * 119.98798 * 359.97438 * 23 21 20 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 31 31 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.47195 * 299.98994 * 9 8 6 33 33 H 1.08995 * 109.47470 * 59.99670 * 9 8 6 34 34 H 0.97000 * 119.99968 * 179.97438 * 13 12 10 35 35 H 1.07998 * 119.99392 * 0.02562 * 19 18 2 36 36 H 1.08001 * 120.00928 * 180.27225 * 20 19 18 37 37 H 1.07998 * 120.00559 * 179.97438 * 23 21 20 38 38 H 1.07991 * 119.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8677 -1.6986 -3.4703 8 7 2.7283 0.1206 -4.7325 9 6 3.2196 -0.6030 -5.9078 10 6 3.2839 0.3358 -7.0849 11 1 2.9880 1.3680 -6.9692 12 6 3.7206 -0.1230 -8.3096 13 7 4.0805 -1.3801 -8.4506 14 14 3.8010 1.0407 -9.7685 15 1 3.3445 2.3906 -9.3507 16 1 5.1995 1.1210 -10.2612 17 1 2.9221 0.5355 -10.8537 18 6 2.0324 -0.7104 1.2305 19 6 2.0613 -2.0921 1.2671 20 6 2.5272 -2.7441 2.3932 21 6 2.9540 -2.0140 3.4881 22 17 3.5321 -2.8323 4.9057 23 6 2.9195 -0.6313 3.4530 24 6 2.4591 0.0198 2.3240 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 2.5044 1.0619 -4.8011 32 1 4.2149 -0.9969 -5.7021 33 1 2.5431 -1.4263 -6.1367 34 1 4.3873 -1.7030 -9.3122 35 1 1.7244 -2.6619 0.4138 36 1 2.5540 -3.8234 2.4201 37 1 3.2521 -0.0608 4.3075 38 1 2.4325 1.0990 2.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027354380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:42 Heat of formation + Delta-G solvation = -49.951975 kcal Electronic energy + Delta-G solvation = -20273.312426 eV Core-core repulsion = 16946.984493 eV Total energy + Delta-G solvation = -3326.327933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76839 -40.24037 -37.88001 -36.97152 -36.06137 -34.33101 -32.76236 -31.96911 -30.10283 -29.36869 -26.97431 -24.67828 -24.22561 -23.48818 -21.50241 -21.34536 -19.11133 -18.18458 -17.48558 -17.26160 -16.74453 -16.58226 -16.23350 -15.95529 -15.39376 -15.09948 -14.90924 -14.54521 -14.36121 -14.31437 -14.02849 -13.88024 -13.74434 -13.38710 -12.89674 -12.87539 -12.71355 -12.70354 -12.35235 -12.21386 -12.11665 -11.91429 -11.69051 -11.44833 -10.81041 -10.71447 -9.94391 -9.80744 -9.55100 -9.31646 -8.28762 -6.45227 0.20169 0.39515 1.18932 1.43757 1.44812 1.58240 1.82636 2.29857 2.49217 2.71918 3.06290 3.32329 3.79483 3.86477 3.98937 4.01473 4.23782 4.27824 4.39297 4.48085 4.53576 4.55785 4.74256 4.84288 4.90948 5.05686 5.12995 5.23952 5.25661 5.30685 5.33875 5.50430 5.56398 5.71501 5.86204 5.88723 6.04323 6.31792 6.66923 6.97126 7.24642 7.55451 8.83653 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.002278 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.024773 B =12288.255786 C =12708.562567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 H 0.109 0.891 4 N -0.684 5.684 5 C 0.058 3.942 6 C 0.491 3.509 7 O -0.594 6.594 8 N -0.709 5.709 9 C 0.267 3.733 10 C -0.554 4.554 11 H 0.085 0.915 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.985 3.015 15 H -0.251 1.251 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.068 4.068 19 C -0.098 4.098 20 C -0.123 4.123 21 C -0.051 4.051 22 Cl -0.079 7.079 23 C -0.115 4.115 24 C -0.102 4.102 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.346 0.654 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.409 0.591 32 H -0.016 1.016 33 H -0.014 1.014 34 H 0.268 0.732 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 7.187 24.475 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.016 3.984 3 H 0.127 0.873 4 N -0.316 5.316 5 C -0.074 4.074 6 C 0.278 3.722 7 O -0.474 6.474 8 N -0.360 5.360 9 C 0.144 3.856 10 C -0.591 4.591 11 H 0.103 0.897 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.808 3.192 15 H -0.175 1.175 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.078 4.078 22 Cl -0.050 7.050 23 C -0.133 4.133 24 C -0.120 4.120 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.165 0.835 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.245 0.755 32 H 0.002 0.998 33 H 0.004 0.996 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.723 6.241 24.680 26.330 hybrid contribution -0.563 -0.062 -1.123 1.257 sum -7.286 6.179 23.558 25.421 Atomic orbital electron populations 1.22463 0.94705 1.02662 1.03548 1.20555 0.93744 0.97763 0.86319 0.87316 1.60194 1.58969 1.09396 1.03060 1.21794 1.02711 0.95479 0.87413 1.21504 0.77800 0.87563 0.85314 1.90647 1.52533 1.18727 1.85541 1.46175 1.65616 1.14571 1.09658 1.18503 0.91974 0.92124 0.83028 1.21666 1.45622 0.97414 0.94437 0.89652 1.26093 0.94109 0.97066 1.02567 1.70151 1.44133 1.16835 1.25961 0.85104 0.77764 0.78843 0.77456 1.17468 1.20588 1.20531 1.20047 0.97849 0.93629 0.95345 1.21020 0.98816 0.94772 0.97041 1.21185 0.99658 1.00861 0.92415 1.21085 1.03755 0.93520 0.89443 1.98359 1.87556 1.79502 1.39599 1.21255 1.00199 0.91894 0.99963 1.21241 0.97747 1.01359 0.91663 0.90285 0.91363 0.92755 0.83454 0.89280 0.85892 0.75527 0.99804 0.99578 0.92307 0.85614 0.84747 0.83311 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.14 71.98 0.66 -1.62 16 2 C 0.13 2.02 2.79 44.17 0.12 2.14 16 3 H 0.11 1.36 7.66 -2.39 -0.02 1.34 16 4 N -0.68 -16.14 5.34 -499.44 -2.66 -18.81 16 5 C 0.06 1.36 5.97 85.56 0.51 1.87 16 6 C 0.49 18.74 7.87 87.66 0.69 19.43 16 7 O -0.59 -28.95 16.20 -3.03 -0.05 -29.00 16 8 N -0.71 -28.90 5.55 -466.79 -2.59 -31.49 16 9 C 0.27 14.55 5.43 85.63 0.46 15.02 16 10 C -0.55 -29.79 9.28 25.60 0.24 -29.55 16 11 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 12 C 0.00 0.06 5.46 84.65 0.46 0.52 16 13 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 14 Si 0.99 41.97 29.54 68.60 2.03 44.00 16 15 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 C -0.07 -1.23 4.95 -19.86 -0.10 -1.32 16 19 C -0.10 -2.04 9.32 22.27 0.21 -1.83 16 20 C -0.12 -2.49 9.83 22.29 0.22 -2.27 16 21 C -0.05 -0.99 6.32 22.33 0.14 -0.85 16 22 Cl -0.08 -1.44 28.96 -2.72 -0.08 -1.52 16 23 C -0.11 -1.84 9.83 22.29 0.22 -1.62 16 24 C -0.10 -1.52 9.67 22.27 0.22 -1.30 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.82 7.45 -2.39 -0.02 0.80 16 27 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.35 8.89 7.52 -89.69 -0.67 8.21 16 29 H 0.09 1.57 7.44 -2.39 -0.02 1.55 16 30 H 0.12 2.34 8.05 -2.39 -0.02 2.32 16 31 H 0.41 13.36 8.32 -92.71 -0.77 12.58 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.13 2.70 7.25 -2.91 -0.02 2.68 16 36 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.16 1.42 8.04 -2.91 -0.02 1.40 16 Total: -1.00 -72.83 342.35 0.62 -72.22 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.36 Total: 22.00 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.05 Total: -1.39 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -4.97 Total: -106.31 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -29.00 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -72.83 0.62 -72.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027354380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.263 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds