Wall clock time and date at job start Tue Mar 31 2020 07:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 N 1.46497 * 109.47370 * 119.99821 * 2 1 3 5 5 C 1.46497 * 119.99830 * 295.01924 * 4 2 1 6 6 C 1.50699 * 109.47104 * 269.99466 * 5 4 2 7 7 H 1.08000 * 120.00490 * 0.02562 * 6 5 4 8 8 C 1.37886 * 120.00211 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99540 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00151 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47039 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46963 * 120.00123 * 10 8 6 13 13 H 1.48497 * 109.47147 * 240.00227 * 10 8 6 14 14 C 1.34773 * 120.00036 * 115.01877 * 4 2 1 15 15 O 1.21583 * 120.00188 * 185.25894 * 14 4 2 16 16 N 1.34779 * 119.99818 * 5.25275 * 14 4 2 17 17 C 1.39944 * 119.99691 * 184.80838 * 16 14 4 18 18 C 1.38897 * 120.06367 * 324.88714 * 17 16 14 19 19 C 1.38102 * 119.95606 * 180.02562 * 18 17 16 20 20 C 1.38284 * 120.08233 * 0.02562 * 19 18 17 21 21 C 1.38374 * 120.12423 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.97444 * 180.02562 * 21 20 19 23 23 C 1.38250 * 120.04855 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.46650 * 300.00128 * 1 2 3 25 25 H 1.08993 * 109.46961 * 59.99594 * 1 2 3 26 26 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47211 * 240.00036 * 2 1 3 28 28 H 1.09004 * 109.47001 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46950 * 299.99939 * 3 2 1 30 30 H 1.08994 * 109.47569 * 60.00321 * 3 2 1 31 31 H 1.08998 * 109.47528 * 29.99718 * 5 4 2 32 32 H 1.09004 * 109.47361 * 149.99905 * 5 4 2 33 33 H 0.96995 * 119.99214 * 180.02562 * 9 8 6 34 34 H 0.97003 * 120.00264 * 4.80344 * 16 14 4 35 35 H 1.07995 * 120.02218 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.96008 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.93412 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.04337 * 180.27535 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7567 -0.1296 2.5239 6 6 2.8809 0.7977 2.9080 7 1 3.7074 0.9539 2.2306 8 6 2.8543 1.4467 4.1242 9 7 1.8480 1.2561 4.9493 10 14 4.2474 2.5966 4.5999 11 1 5.2503 2.6384 3.5056 12 1 3.7071 3.9609 4.8280 13 1 4.8919 2.1051 5.8442 14 6 2.7084 -1.8419 1.0751 15 8 3.0309 -2.4647 2.0682 16 7 3.0409 -2.3029 -0.1470 17 6 3.6682 -3.5469 -0.2787 18 6 4.5723 -3.9757 0.6846 19 6 5.1905 -5.2035 0.5522 20 6 4.9109 -6.0063 -0.5385 21 6 4.0107 -5.5824 -1.5002 22 17 3.6621 -6.5937 -2.8676 23 6 3.3889 -4.3543 -1.3729 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.8185 0.4249 2.5057 32 1 1.6872 -0.9374 3.2525 33 1 1.8292 1.7130 5.8047 34 1 2.8453 -1.7725 -0.9353 35 1 4.7917 -3.3494 1.5366 36 1 5.8932 -5.5372 1.3014 37 1 5.3960 -6.9659 -0.6399 38 1 2.6830 -4.0255 -2.1212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042248701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:32 Heat of formation + Delta-G solvation = -3.723856 kcal Electronic energy + Delta-G solvation = -21665.538521 eV Core-core repulsion = 18341.215190 eV Total energy + Delta-G solvation = -3324.323332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.41784 -38.72128 -36.65912 -36.06646 -34.44371 -32.79692 -31.04254 -30.70769 -29.48442 -27.17508 -26.68248 -23.48879 -22.81557 -22.15303 -21.39773 -19.01646 -18.25602 -17.13612 -16.53516 -16.13550 -15.39667 -15.04835 -14.56054 -14.41662 -14.15253 -13.76970 -13.64183 -13.50725 -13.27702 -12.78520 -12.33763 -11.96950 -11.80367 -11.74703 -11.68394 -11.43740 -11.23902 -11.03806 -10.99764 -10.90082 -10.64322 -10.46129 -10.10329 -10.04895 -9.60755 -9.28653 -8.76970 -8.45576 -8.10891 -7.65774 -6.06629 -4.10412 1.24841 1.28589 2.03223 3.10993 3.27299 3.35683 3.39085 3.55994 3.93130 4.24276 4.44501 4.83254 5.02850 5.10830 5.27217 5.27719 5.42612 5.45427 5.51045 5.53851 5.73053 5.92414 6.05114 6.13788 6.15931 6.30281 6.36104 6.42676 6.51980 6.60917 6.78828 6.90595 7.10146 7.34894 7.47815 7.61414 7.91330 8.20898 8.51567 8.89631 9.15556 9.54269 11.01290 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.003888 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.088107 B = 7199.162036 C = 8015.162131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 C -0.155 4.155 4 N -0.601 5.601 5 C 0.259 3.741 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.700 3.300 15 O -0.568 6.568 16 N -0.697 5.697 17 C 0.194 3.806 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.138 4.138 21 C -0.016 4.016 22 Cl -0.079 7.079 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.262 0.738 34 H 0.403 0.597 35 H 0.152 0.848 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -8.754 -15.096 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.335 5.335 5 C 0.140 3.860 6 C -0.561 4.561 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.402 3.598 15 O -0.444 6.444 16 N -0.347 5.347 17 C 0.097 3.903 18 C -0.136 4.136 19 C -0.108 4.108 20 C -0.158 4.158 21 C -0.043 4.043 22 Cl -0.050 7.050 23 C -0.173 4.173 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.829 -9.115 -14.236 17.003 hybrid contribution 0.537 0.897 -0.228 1.071 sum 2.366 -8.217 -14.464 16.803 Atomic orbital electron populations 1.22172 0.95378 1.01879 1.02580 1.20919 0.94270 0.94335 0.87261 1.22130 1.01596 0.95197 1.02423 1.47710 1.54964 1.21549 1.09320 1.19218 0.96454 0.94063 0.76230 1.21492 1.06736 1.25578 1.02269 0.92329 1.24920 0.96015 0.97036 0.96117 1.69942 1.30625 1.43125 1.09602 0.86490 0.82260 0.80373 0.78580 1.19865 1.21034 1.20936 1.15896 0.79579 0.81932 0.82371 1.90882 1.59194 1.58516 1.35848 1.43078 1.63219 1.19021 1.09409 1.17390 0.92359 0.85696 0.94888 1.21642 0.94255 0.97541 1.00188 1.21036 0.99173 0.93673 0.96876 1.20948 0.99393 1.01057 0.94387 1.20497 1.00321 0.92613 0.90879 1.98352 1.94418 1.68505 1.43755 1.20658 1.02823 0.93203 1.00588 0.91197 0.92144 0.92904 0.91883 0.92480 0.93182 0.89869 0.94597 0.93727 0.92798 0.75917 0.83039 0.84907 0.85292 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.25 37.16 0.34 -1.90 16 2 C 0.14 2.11 3.24 -67.93 -0.22 1.89 16 3 C -0.16 -2.43 8.36 37.16 0.31 -2.11 16 4 N -0.60 -12.10 2.38 -173.17 -0.41 -12.52 16 5 C 0.26 6.45 4.50 -5.20 -0.02 6.43 16 6 C -0.52 -13.98 7.84 -34.44 -0.27 -14.25 16 7 H 0.06 1.58 7.54 -52.49 -0.40 1.18 16 8 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 9 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 10 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.70 14.32 8.12 -86.92 -0.71 13.61 16 15 O -0.57 -13.84 13.32 5.29 0.07 -13.77 16 16 N -0.70 -10.97 5.23 -14.23 -0.07 -11.04 16 17 C 0.19 2.94 6.30 -83.69 -0.53 2.41 16 18 C -0.12 -1.83 8.70 -39.39 -0.34 -2.17 16 19 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 20 C -0.14 -1.61 9.83 -39.51 -0.39 -2.00 16 21 C -0.02 -0.19 6.32 -39.53 -0.25 -0.44 16 22 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 23 C -0.15 -1.93 9.75 -39.36 -0.38 -2.31 16 24 H 0.07 1.10 6.87 -51.93 -0.36 0.74 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.78 5.48 -51.93 -0.28 0.50 16 28 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.54 6.95 -51.93 -0.36 1.18 16 31 H 0.04 0.90 6.69 -51.93 -0.35 0.56 16 32 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.40 5.09 6.25 -40.82 -0.26 4.83 16 35 H 0.15 2.81 6.22 -52.49 -0.33 2.48 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -30.73 329.96 -8.98 -39.71 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.79 Total: 4.59 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.95 Total: -0.80 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.25 Total: -48.60 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.07 Total: -13.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.73 -8.98 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042248701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.983 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds