Wall clock time and date at job start Tue Mar 31 2020 08:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46903 * 109.47281 * 2 1 4 4 C 1.46895 * 111.00381 * 199.62019 * 3 2 1 5 5 C 1.50700 * 109.47300 * 66.03884 * 4 3 2 6 6 H 1.07992 * 120.00194 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.99737 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99836 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99568 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47019 * 60.00076 * 9 7 5 11 11 H 1.48501 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47504 * 300.00233 * 9 7 5 13 13 C 1.46900 * 110.99950 * 75.65919 * 3 2 1 14 14 C 1.50700 * 109.47149 * 199.98536 * 13 3 2 15 15 O 1.21296 * 119.99837 * 5.11122 * 14 13 3 16 16 N 1.34776 * 120.00305 * 185.11380 * 14 13 3 17 17 C 1.39974 * 120.00082 * 184.81244 * 16 14 13 18 18 C 1.38870 * 120.05262 * 214.34444 * 17 16 14 19 19 C 1.38108 * 119.93819 * 180.23187 * 18 17 16 20 20 C 1.38383 * 120.05829 * 359.46973 * 19 18 17 21 21 Cl 1.73603 * 119.94494 * 180.29964 * 20 19 18 22 22 C 1.38385 * 120.11571 * 0.27685 * 20 19 18 23 23 C 1.38107 * 120.05703 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47287 * 64.47420 * 1 2 3 25 25 H 1.09000 * 109.47117 * 184.47407 * 1 2 3 26 26 H 1.09000 * 109.47145 * 304.47055 * 1 2 3 27 27 H 1.08999 * 109.47325 * 239.99795 * 2 1 3 28 28 H 1.08996 * 109.47619 * 119.99845 * 2 1 3 29 29 H 1.08999 * 109.47642 * 186.04745 * 4 3 2 30 30 H 1.09003 * 109.47101 * 306.04494 * 4 3 2 31 31 H 0.97004 * 119.99158 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46877 * 79.98825 * 13 3 2 33 33 H 1.08994 * 109.47116 * 319.98763 * 13 3 2 34 34 H 0.97000 * 119.99758 * 4.80875 * 16 14 13 35 35 H 1.07995 * 120.03092 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.97442 * 179.74577 * 19 18 17 37 37 H 1.08001 * 119.97245 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.03326 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4130 1.4508 -0.4605 5 6 3.4826 1.0458 -1.9104 6 1 2.5818 0.7678 -2.4372 7 6 4.6964 1.0303 -2.5643 8 7 5.7934 1.3683 -1.9225 9 14 4.7825 0.5290 -4.3617 10 1 3.9494 1.4521 -5.1735 11 1 6.1913 0.5942 -4.8268 12 1 4.2754 -0.8584 -4.5136 13 6 1.8748 1.9946 1.3287 14 6 1.9091 3.4956 1.1992 15 8 1.9476 4.0088 0.1008 16 7 1.8969 4.2678 2.3037 17 6 1.8269 5.6606 2.1833 18 6 2.4876 6.4717 3.0965 19 6 2.4130 7.8457 2.9782 20 6 1.6898 8.4141 1.9444 21 17 1.6044 10.1415 1.7940 22 6 1.0348 7.6080 1.0299 23 6 1.1019 6.2335 1.1467 24 1 -0.3634 0.4428 -0.9273 25 1 -0.3633 -1.0245 0.0802 26 1 -0.3633 0.5816 0.8472 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 3.7847 2.4694 -0.3494 30 1 4.0250 0.7738 0.1355 31 1 6.6472 1.3577 -2.3828 32 1 2.6929 1.6665 1.9700 33 1 0.9247 1.6892 1.7669 34 1 1.9365 3.8583 3.1822 35 1 3.0557 6.0285 3.9009 36 1 2.9232 8.4771 3.6906 37 1 0.4707 8.0541 0.2242 38 1 0.5910 5.6048 0.4326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:07 Heat of formation + Delta-G solvation = -7.402962 kcal Electronic energy + Delta-G solvation = -21112.940966 eV Core-core repulsion = 17788.458096 eV Total energy + Delta-G solvation = -3324.482870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40160 -38.60495 -36.75670 -36.27240 -34.42166 -32.61030 -31.14720 -30.52462 -29.59273 -27.85875 -25.25287 -23.20051 -22.50680 -22.42135 -20.63475 -19.70389 -17.87666 -16.91573 -16.65432 -16.40962 -15.46269 -15.13404 -14.56714 -14.46664 -14.09981 -13.88945 -13.70526 -13.53897 -13.35624 -12.84744 -12.38529 -12.31634 -12.04146 -12.00362 -11.65121 -11.51922 -11.24170 -11.00017 -10.92114 -10.71107 -10.52788 -10.20310 -10.05001 -9.85740 -9.48777 -9.16833 -9.05567 -8.39253 -8.05422 -7.32626 -5.98433 -3.98404 1.04361 1.23208 2.08205 2.90128 3.08469 3.36889 3.40897 3.44618 3.65533 4.45743 4.66995 4.79047 4.83383 5.06404 5.17879 5.33674 5.37670 5.44346 5.48083 5.63827 5.70525 5.84573 5.90947 5.92330 6.00762 6.18887 6.22482 6.25337 6.39788 6.65133 6.72288 6.88294 7.23848 7.27359 7.48232 7.81286 8.09636 8.16466 8.43280 8.56290 9.07274 9.64586 11.12935 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003534 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.353867 B = 7920.785494 C = 8911.470982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.519 5.519 4 C 0.195 3.805 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.038 3.962 14 C 0.509 3.491 15 O -0.475 6.475 16 N -0.687 5.687 17 C 0.168 3.832 18 C -0.141 4.141 19 C -0.091 4.091 20 C -0.058 4.058 21 Cl -0.080 7.080 22 C -0.088 4.088 23 C -0.110 4.110 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.020 0.980 29 H 0.036 0.964 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 8.657 13.730 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.071 3.929 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.094 4.094 14 C 0.296 3.704 15 O -0.344 6.344 16 N -0.334 5.334 17 C 0.073 3.927 18 C -0.162 4.162 19 C -0.110 4.110 20 C -0.085 4.085 21 Cl -0.051 7.051 22 C -0.107 4.107 23 C -0.131 4.131 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.244 0.756 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.934 9.355 12.480 18.492 hybrid contribution 0.829 -0.680 0.093 1.076 sum -9.105 8.675 12.573 17.783 Atomic orbital electron populations 1.21808 0.96508 1.00060 1.01802 1.22013 0.94266 0.89514 1.01359 1.61845 1.26417 1.16800 1.19391 1.19781 0.80443 0.97090 0.95617 1.21055 0.93208 1.44453 0.95375 0.91880 1.24968 0.95633 0.95634 0.98337 1.69948 0.98441 1.48833 1.36730 0.86560 0.76828 0.78971 0.85048 1.20132 1.21403 1.20311 1.21892 1.02165 0.90462 0.94854 1.21166 0.75521 0.90025 0.83674 1.90777 1.43477 1.74473 1.25626 1.43813 1.75102 1.03940 1.10577 1.17859 0.95111 0.83415 0.96316 1.20853 1.00979 0.92740 1.01634 1.20771 0.98547 0.94436 0.97264 1.20839 1.04150 0.84221 0.99335 1.98352 1.97553 1.11517 1.97728 1.20944 0.98928 0.92762 0.98109 1.21197 0.98815 0.94249 0.98834 0.92133 0.93270 0.93826 0.89041 0.96186 0.94643 0.99422 0.92953 0.92592 0.88737 0.75626 0.84849 0.84839 0.84743 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.07 37.15 0.37 -1.75 16 2 C 0.06 1.03 5.51 -3.83 -0.02 1.01 16 3 N -0.52 -10.96 3.95 -237.53 -0.94 -11.90 16 4 C 0.20 5.13 4.36 -4.98 -0.02 5.11 16 5 C -0.50 -14.38 8.23 -34.44 -0.28 -14.66 16 6 H 0.06 1.79 7.31 -52.49 -0.38 1.40 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.04 0.62 5.30 -4.98 -0.03 0.60 16 14 C 0.51 8.74 7.14 -10.99 -0.08 8.67 16 15 O -0.47 -10.47 13.23 5.54 0.07 -10.40 16 16 N -0.69 -8.76 5.34 -9.85 -0.05 -8.81 16 17 C 0.17 2.24 6.27 -83.67 -0.52 1.72 16 18 C -0.14 -1.55 9.96 -39.40 -0.39 -1.95 16 19 C -0.09 -0.98 9.82 -39.58 -0.39 -1.37 16 20 C -0.06 -0.69 6.32 -39.47 -0.25 -0.94 16 21 Cl -0.08 -0.87 28.95 -51.86 -1.50 -2.37 16 22 C -0.09 -1.12 9.82 -39.58 -0.39 -1.51 16 23 C -0.11 -1.58 8.65 -39.40 -0.34 -1.92 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.57 6.66 -51.93 -0.35 0.23 16 27 H 0.09 1.89 6.58 -51.93 -0.34 1.55 16 28 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 29 H 0.04 1.04 6.90 -51.93 -0.36 0.68 16 30 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 0.85 7.99 -51.93 -0.42 0.44 16 33 H 0.09 1.22 6.44 -51.93 -0.33 0.89 16 34 H 0.41 3.57 8.82 -40.82 -0.36 3.21 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.15 2.31 6.46 -52.49 -0.34 1.97 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -33.61 334.58 -9.07 -42.68 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.96 Total: 0.67 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.44 Total: -5.49 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.26 Total: -47.26 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.61 -9.07 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.276 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds