Wall clock time and date at job start Tue Mar 31 2020 08:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46903 * 109.47281 * 2 1 4 4 C 1.46895 * 111.00381 * 199.62019 * 3 2 1 5 5 C 1.50700 * 109.47300 * 66.03884 * 4 3 2 6 6 H 1.07992 * 120.00194 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.99737 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99836 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99568 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47019 * 60.00076 * 9 7 5 11 11 H 1.48501 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47504 * 300.00233 * 9 7 5 13 13 C 1.46900 * 110.99950 * 75.65919 * 3 2 1 14 14 C 1.50700 * 109.47149 * 199.98536 * 13 3 2 15 15 O 1.21296 * 119.99837 * 5.11122 * 14 13 3 16 16 N 1.34776 * 120.00305 * 185.11380 * 14 13 3 17 17 C 1.39974 * 120.00082 * 184.81244 * 16 14 13 18 18 C 1.38870 * 120.05262 * 214.34444 * 17 16 14 19 19 C 1.38108 * 119.93819 * 180.23187 * 18 17 16 20 20 C 1.38383 * 120.05829 * 359.46973 * 19 18 17 21 21 Cl 1.73603 * 119.94494 * 180.29964 * 20 19 18 22 22 C 1.38385 * 120.11571 * 0.27685 * 20 19 18 23 23 C 1.38107 * 120.05703 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47287 * 64.47420 * 1 2 3 25 25 H 1.09000 * 109.47117 * 184.47407 * 1 2 3 26 26 H 1.09000 * 109.47145 * 304.47055 * 1 2 3 27 27 H 1.08999 * 109.47325 * 239.99795 * 2 1 3 28 28 H 1.08996 * 109.47619 * 119.99845 * 2 1 3 29 29 H 1.08999 * 109.47642 * 186.04745 * 4 3 2 30 30 H 1.09003 * 109.47101 * 306.04494 * 4 3 2 31 31 H 0.97004 * 119.99158 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46877 * 79.98825 * 13 3 2 33 33 H 1.08994 * 109.47116 * 319.98763 * 13 3 2 34 34 H 0.97000 * 119.99758 * 4.80875 * 16 14 13 35 35 H 1.07995 * 120.03092 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.97442 * 179.74577 * 19 18 17 37 37 H 1.08001 * 119.97245 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.03326 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4130 1.4508 -0.4605 5 6 3.4826 1.0458 -1.9104 6 1 2.5818 0.7678 -2.4372 7 6 4.6964 1.0303 -2.5643 8 7 5.7934 1.3683 -1.9225 9 14 4.7825 0.5290 -4.3617 10 1 3.9494 1.4521 -5.1735 11 1 6.1913 0.5942 -4.8268 12 1 4.2754 -0.8584 -4.5136 13 6 1.8748 1.9946 1.3287 14 6 1.9091 3.4956 1.1992 15 8 1.9476 4.0088 0.1008 16 7 1.8969 4.2678 2.3037 17 6 1.8269 5.6606 2.1833 18 6 2.4876 6.4717 3.0965 19 6 2.4130 7.8457 2.9782 20 6 1.6898 8.4141 1.9444 21 17 1.6044 10.1415 1.7940 22 6 1.0348 7.6080 1.0299 23 6 1.1019 6.2335 1.1467 24 1 -0.3634 0.4428 -0.9273 25 1 -0.3633 -1.0245 0.0802 26 1 -0.3633 0.5816 0.8472 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 3.7847 2.4694 -0.3494 30 1 4.0250 0.7738 0.1355 31 1 6.6472 1.3577 -2.3828 32 1 2.6929 1.6665 1.9700 33 1 0.9247 1.6892 1.7669 34 1 1.9365 3.8583 3.1822 35 1 3.0557 6.0285 3.9009 36 1 2.9232 8.4771 3.6906 37 1 0.4707 8.0541 0.2242 38 1 0.5910 5.6048 0.4326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:06 Heat of formation + Delta-G solvation = -30.000370 kcal Electronic energy + Delta-G solvation = -21113.920863 eV Core-core repulsion = 17788.458096 eV Total energy + Delta-G solvation = -3325.462767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57416 -39.76755 -38.13845 -37.38092 -35.61363 -34.75801 -32.09524 -31.84650 -30.95505 -29.44707 -26.94112 -24.29997 -24.20419 -23.56060 -21.96867 -21.11110 -18.96035 -18.57452 -18.14316 -17.60220 -16.96381 -16.53856 -16.02167 -15.97274 -15.35410 -15.26069 -15.08263 -14.49953 -14.46343 -14.22374 -14.14023 -13.88304 -13.34267 -13.23094 -12.87154 -12.77526 -12.62040 -12.59641 -12.49048 -12.35270 -11.91840 -11.82391 -11.62476 -11.28705 -11.17938 -10.77430 -10.59206 -10.05083 -9.08657 -8.98072 -8.20097 -6.28177 0.04707 0.28661 1.15739 1.38152 1.42674 1.49895 1.62920 1.96861 2.40264 2.67257 3.12872 3.32464 3.71510 3.88699 3.91812 4.19396 4.25850 4.34444 4.34866 4.42247 4.51513 4.57307 4.76989 4.89716 4.98995 5.00769 5.08338 5.20192 5.23226 5.25753 5.36037 5.40173 5.48960 5.64817 5.86014 6.06629 6.36482 6.39255 6.66383 6.86490 7.24708 7.40088 8.91107 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003534 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.353867 B = 7920.785494 C = 8911.470982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 N -0.538 5.538 4 C 0.217 3.783 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.038 3.962 14 C 0.508 3.492 15 O -0.535 6.535 16 N -0.665 5.665 17 C 0.146 3.854 18 C -0.130 4.130 19 C -0.088 4.088 20 C -0.063 4.063 21 Cl -0.070 7.070 22 C -0.098 4.098 23 C -0.131 4.131 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.038 0.962 29 H -0.004 1.004 30 H -0.034 1.034 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.429 0.571 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 8.553 15.336 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.263 5.263 4 C 0.091 3.909 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.186 1.186 13 C -0.094 4.094 14 C 0.296 3.704 15 O -0.409 6.409 16 N -0.314 5.314 17 C 0.051 3.949 18 C -0.151 4.151 19 C -0.107 4.107 20 C -0.090 4.090 21 Cl -0.042 7.042 22 C -0.117 4.117 23 C -0.152 4.152 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.015 0.985 30 H -0.016 1.016 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.269 0.731 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.625 9.245 14.156 19.968 hybrid contribution 0.999 -0.558 -0.306 1.185 sum -9.625 8.687 13.850 18.972 Atomic orbital electron populations 1.21718 0.93343 1.02125 1.01838 1.22055 0.96709 0.87804 1.00701 1.61658 1.22896 1.18868 1.22831 1.19288 0.83233 0.93834 0.94573 1.21416 0.93227 1.44301 0.96838 0.92283 1.25883 0.95233 0.95531 1.03067 1.70075 0.98982 1.49900 1.38628 0.85490 0.77037 0.79199 0.79222 1.20071 1.20694 1.18633 1.22043 1.04890 0.89674 0.92753 1.21369 0.74624 0.90662 0.83742 1.90759 1.46651 1.75409 1.28052 1.43484 1.73623 1.03783 1.10505 1.18070 0.96133 0.83615 0.97048 1.21177 0.99882 0.92652 1.01348 1.21147 0.97709 0.94719 0.97081 1.20993 1.03905 0.84743 0.99363 1.98355 1.97507 1.10582 1.97723 1.21025 0.99466 0.92371 0.98814 1.21111 1.00026 0.94808 0.99237 0.93842 0.90481 0.91699 0.92222 0.94337 0.98539 1.01606 0.92826 0.90997 0.84513 0.73118 0.81655 0.81991 0.84156 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 10.07 71.98 0.72 -2.90 16 2 C 0.05 1.97 5.51 86.30 0.48 2.44 16 3 N -0.54 -22.92 3.95 -905.41 -3.58 -26.50 16 4 C 0.22 11.84 4.36 85.56 0.37 12.21 16 5 C -0.52 -30.71 8.23 25.60 0.21 -30.50 16 6 H 0.06 3.45 7.31 -2.91 -0.02 3.43 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 9 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 13 C 0.04 1.19 5.30 85.56 0.45 1.64 16 14 C 0.51 17.56 7.14 87.66 0.63 18.19 16 15 O -0.53 -24.76 13.23 -3.08 -0.04 -24.80 16 16 N -0.67 -16.30 5.34 -303.47 -1.62 -17.92 16 17 C 0.15 3.79 6.27 38.14 0.24 4.03 16 18 C -0.13 -2.56 9.96 22.39 0.22 -2.33 16 19 C -0.09 -1.67 9.82 22.27 0.22 -1.45 16 20 C -0.06 -1.41 6.32 22.34 0.14 -1.27 16 21 Cl -0.07 -1.43 28.95 -2.72 -0.08 -1.51 16 22 C -0.10 -2.50 9.82 22.27 0.22 -2.29 16 23 C -0.13 -3.88 8.65 22.39 0.19 -3.68 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.49 6.66 -2.39 -0.02 1.48 16 27 H 0.06 2.50 6.58 -2.39 -0.02 2.49 16 28 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 29 H 0.00 -0.22 6.90 -2.39 -0.02 -0.23 16 30 H -0.03 -1.92 8.12 -2.39 -0.02 -1.94 16 31 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.07 2.08 7.99 -2.39 -0.02 2.06 16 33 H 0.14 3.10 6.44 -2.39 -0.02 3.08 16 34 H 0.43 6.48 8.82 -92.71 -0.82 5.66 16 35 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.12 4.13 6.46 -2.91 -0.02 4.11 16 Total: -1.00 -76.99 334.58 1.81 -75.17 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.26 Total: 10.74 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.56 Total: -5.42 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -4.91 Total: -102.33 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.04 Total: -24.80 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -76.99 1.81 -75.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.172 kcal (2) G-P(sol) polarization free energy of solvation -76.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds